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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950415
Clone id TST38A01NGRL0008_J14
Library
Length 623
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_J14. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CATTCTCCCACCCACAACTGTTTCTCGAGTCGAAGATTGTTTTTCAACACTTTTATGGGC
TTGTAGACGATGCCCTCAATGGCTGTCGATGCTGGGTTTTCCTCTCTTCCATTTGCCCCT
TTGCCTCACCTCTCAGAAAGAATCTCCCGCGGGCGCCCATCTAAGCTCTTTCGGGCAATT
GATGGCGGAATTGCCCACGACAAGCTTTCAAAGGAGAAACTGAATTGCACAGGTGGTATT
AGTGAGGAGCCGAGAACCAGCACAATTCTGGAATGTTCTGAGCATCACCGGAAAGAGGAT
GGAAGTTCTCCTTCTTGGTTCAAATTGGCTAGCCAGCTGGTGCCGGTTGCTACACAAGGC
GAAGCTTCAGCTTGCTTTGTTACAGCTTCAACTATAGATGGCACAAATGAATATCAATGG
AGCCCTTTTTGTTACATCCTCTGCTCTGATGATGCAGCCAATGAGGTGCCTCTTGGAAAT
GTTTGTGGGGCTAGTGCCACTGCTGCAGTTCAGTCTACTCCTCCTCCTAAGCAGAAGCAA
GAGGACCCAGAGGAGCAGGATTTTCATGTCAATATCGGTTATGCCATCCGGACTCTAAGG
GAAGAGCTGCCTTGCATGTTCTA
■■Homology search results ■■ -
sp_hit_id P32114
Definition sp|P32114|PAX2_MOUSE Paired box protein Pax-2 OS=Mus musculus
Align length 72
Score (bit) 32.3
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950415|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_J14, 5'
         (623 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P32114|PAX2_MOUSE Paired box protein Pax-2 OS=Mus musculus GN...    32   2.0  
sp|P08637|FCG3A_HUMAN Low affinity immunoglobulin gamma Fc regio...    31   4.5  
sp|Q02962|PAX2_HUMAN Paired box protein Pax-2 OS=Homo sapiens GN...    31   5.9  
sp|O08795|GLU2B_MOUSE Glucosidase 2 subunit beta OS=Mus musculus...    28   7.9  

>sp|P32114|PAX2_MOUSE Paired box protein Pax-2 OS=Mus musculus
           GN=Pax2 PE=1 SV=2
          Length = 414

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +1

Query: 199 DKLSKEKLNCTGGISEEPRTSTILECSEHHRKEDGSSPSWFKLASQLVPVATQGEASACF 378
           D  ++++L     + E P    + + SEH + E G+  S   L   L  V +   ASA  
Sbjct: 253 DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANP 312

Query: 379 VTASTIDGTNEY 414
              S + GT  Y
Sbjct: 313 ELGSNVSGTQTY 324


>sp|P08637|FCG3A_HUMAN Low affinity immunoglobulin gamma Fc region
           receptor III-A OS=Homo sapiens GN=FCGR3A PE=2 SV=2
          Length = 254

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 23/75 (30%), Positives = 36/75 (48%)
 Frame = +1

Query: 253 RTSTILECSEHHRKEDGSSPSWFKLASQLVPVATQGEASACFVTASTIDGTNEYQWSPFC 432
           + S  L+C   +  ED S+  WF   S +       +AS+ F+ A+T+D + EY+     
Sbjct: 40  KDSVTLKCQGAYSPEDNST-QWFHNESLI-----SSQASSYFIDAATVDDSGEYRCQTNL 93

Query: 433 YILCSDDAANEVPLG 477
             L SD    EV +G
Sbjct: 94  STL-SDPVQLEVHIG 107


>sp|Q02962|PAX2_HUMAN Paired box protein Pax-2 OS=Homo sapiens
           GN=PAX2 PE=1 SV=4
          Length = 417

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = +1

Query: 199 DKLSKEKLNCTGGISEEPRTSTILECSEHHRKEDGSSPSWFKLASQLVPVATQGEASACF 378
           D  ++++L     + E P    + + SEH + E G+  S   L   L  V +   AS   
Sbjct: 254 DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNP 313

Query: 379 VTASTIDGTNEY 414
              S + GT  Y
Sbjct: 314 ELGSNVSGTQTY 325


>sp|O08795|GLU2B_MOUSE Glucosidase 2 subunit beta OS=Mus musculus
           GN=Prkcsh PE=1 SV=1
          Length = 521

 Score = 28.1 bits (61), Expect(2) = 7.9
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
 Frame = +1

Query: 160 SKLFRAIDGG--IAHDKLSKEKLNCTGGISEEPRTSTILECSEHHRKEDGSSPSWFKLAS 333
           SK F  +DG   I  D+++ +  +C  G S+EP T+     S  H    G  P +  L+S
Sbjct: 34  SKPFTCLDGTATIPFDQVNDDYCDCKDG-SDEPGTAACPNGS-FHCTNTGYKPLYI-LSS 90

Query: 334 QLVPVATQGEASACFVTASTIDGTNEYQWSPFCYILCSDDAANE 465
           ++      G    C       DGT+EY     C   C +    E
Sbjct: 91  RV----NDGVCDCC-------DGTDEYNSGTVCENTCREKGRKE 123



 Score = 21.2 bits (43), Expect(2) = 7.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 89  MLGFPLFHLPLCLTSQKESPAGAHLSS 169
           ML   L  LPLC   + + P G  LS+
Sbjct: 1   MLLLLLLLLPLCWAVEVKRPRGVSLSN 27
tr_hit_id A4HWN3
Definition tr|A4HWN3|A4HWN3_LEIIN Phosphomevalonate kinase-like protein OS=Leishmania infantum
Align length 77
Score (bit) 35.0
E-value 3.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950415|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_J14, 5'
         (623 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4HWN3|A4HWN3_LEIIN Phosphomevalonate kinase-like protein OS=...    35   3.6  
tr|Q5BFX3|Q5BFX3_EMENI Putative uncharacterized protein OS=Emeri...    35   3.6  
tr|Q0JPI2|Q0JPI2_ORYSJ Os01g0221500 protein OS=Oryza sativa subs...    35   4.7  
tr|B8AAM1|B8AAM1_ORYSI Putative uncharacterized protein OS=Oryza...    35   4.7  
tr|A9PJU1|A9PJU1_POPJC Putative uncharacterized protein OS=Popul...    35   4.7  
tr|A2ZQS5|A2ZQS5_ORYSJ Putative uncharacterized protein OS=Oryza...    35   4.7  
tr|Q4XXY5|Q4XXY5_PLACH Putative uncharacterized protein (Fragmen...    35   4.7  
tr|Q4X7A2|Q4X7A2_PLACH Putative uncharacterized protein (Fragmen...    35   4.7  
tr|Q4QF34|Q4QF34_LEIMA Phosphomevalonate kinase-like protein OS=...    34   6.2  
tr|Q1AXR6|Q1AXR6_RUBXD Amine oxidase OS=Rubrobacter xylanophilus...    34   8.0  
tr|A7QMI6|A7QMI6_VITVI Chromosome chr19 scaffold_126, whole geno...    34   8.0  

>tr|A4HWN3|A4HWN3_LEIIN Phosphomevalonate kinase-like protein
           OS=Leishmania infantum GN=LinJ15.1420 PE=3 SV=1
          Length = 458

 Score = 35.0 bits (79), Expect = 3.6
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = +1

Query: 229 TGGISEEPRTSTILECSEHHRKEDGSSPSWFKLASQLVPVATQGEASACFVTASTIDGTN 408
           TG  S    T++I+ C  HH   DG S  +    +Q+    TQG+  + F   + + GT 
Sbjct: 159 TGLGSSAAMTTSIVACLCHHFNADGCSHEYVHRIAQIAHSVTQGKIGSGFDVYTAVYGTC 218

Query: 409 EYQWSPFCYILCSDDAA 459
            Y+  P   +    D+A
Sbjct: 219 AYRRFPASRVSMMMDSA 235


>tr|Q5BFX3|Q5BFX3_EMENI Putative uncharacterized protein OS=Emericella
            nidulans GN=AN0557.2 PE=4 SV=1
          Length = 1114

 Score = 35.0 bits (79), Expect = 3.6
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 17/109 (15%)
 Frame = +1

Query: 79   MAVDAGFSSLPFAPLPHLSERISRGRPSKLFRAIDGGIAHDKL-----------SKEKLN 225
            M+ D+G SS   +PLPH+      G P +  R +  G A   +           + E +N
Sbjct: 694  MSGDSGASSAVSSPLPHMQRSSDSGIPGQRGRYMAVGTATGSVFVWDIRSPTSRNSEIIN 753

Query: 226  CTGGI----SEEPRTSTILECSEH--HRKEDGSSPSWFKLASQLVPVAT 354
                I    +E PR S++   S +  H   DG   +W  LAS   P+ T
Sbjct: 754  SIAPIRIIFTESPRVSSVALTSLYLVHGGNDGLVQAWDPLASTTRPIRT 802


>tr|Q0JPI2|Q0JPI2_ORYSJ Os01g0221500 protein OS=Oryza sativa subsp.
           japonica GN=Os01g0221500 PE=4 SV=1
          Length = 139

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 14/20 (70%), Positives = 19/20 (95%)
 Frame = +1

Query: 562 FHVNIGYAIRTLREELPCMF 621
           +++N+GYAIRTLREELP +F
Sbjct: 94  YYLNMGYAIRTLREELPDVF 113


>tr|B8AAM1|B8AAM1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00939 PE=4 SV=1
          Length = 271

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 14/20 (70%), Positives = 19/20 (95%)
 Frame = +1

Query: 562 FHVNIGYAIRTLREELPCMF 621
           +++N+GYAIRTLREELP +F
Sbjct: 93  YYLNMGYAIRTLREELPDVF 112


>tr|A9PJU1|A9PJU1_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 234

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +1

Query: 562 FHVNIGYAIRTLREELPCMF 621
           ++VN+GYAIRTLREE P +F
Sbjct: 71  YYVNMGYAIRTLREEFPGLF 90


>tr|A2ZQS5|A2ZQS5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_000897 PE=4 SV=1
          Length = 324

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 14/20 (70%), Positives = 19/20 (95%)
 Frame = +1

Query: 562 FHVNIGYAIRTLREELPCMF 621
           +++N+GYAIRTLREELP +F
Sbjct: 94  YYLNMGYAIRTLREELPDVF 113


>tr|Q4XXY5|Q4XXY5_PLACH Putative uncharacterized protein (Fragment)
           OS=Plasmodium chabaudi GN=PC000878.02.0 PE=4 SV=1
          Length = 1068

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = -3

Query: 144 DSF*EVRQRGKWKRGKPSIDSH*GHRLQAHKSVEKQSSTRETVVGGRM 1
           D+F ++ + GK ++G+P IDSH  HR    + + +   T+  ++GG+M
Sbjct: 259 DNFTQIYKEGKDEKGEP-IDSHKLHRQHKIEKINEIDPTKPNIIGGKM 305


>tr|Q4X7A2|Q4X7A2_PLACH Putative uncharacterized protein (Fragment)
           OS=Plasmodium chabaudi GN=PC302378.00.0 PE=4 SV=1
          Length = 377

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = -3

Query: 144 DSF*EVRQRGKWKRGKPSIDSH*GHRLQAHKSVEKQSSTRETVVGGRM 1
           D+F ++ + GK ++G+P IDSH  HR    + + +   T+  ++GG+M
Sbjct: 48  DNFTQIYKEGKDEKGEP-IDSHKLHRQHKIEKINEIDPTKPNIIGGKM 94


>tr|Q4QF34|Q4QF34_LEIMA Phosphomevalonate kinase-like protein
           OS=Leishmania major GN=LmjF15.1460 PE=3 SV=1
          Length = 459

 Score = 34.3 bits (77), Expect = 6.2
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +1

Query: 229 TGGISEEPRTSTILECSEHHRKEDGSSPSWFKLASQLVPVATQGEASACFVTASTIDGTN 408
           TG  S    T++I+ C  HH   DG S  +    +Q+    TQG+  + F   + + GT 
Sbjct: 159 TGLGSSAAMTTSIVACLCHHFNADGCSHEYVHRIAQIAHSVTQGKIGSGFDVYTAVYGTC 218

Query: 409 EYQWSP 426
            Y+  P
Sbjct: 219 AYRRFP 224


>tr|Q1AXR6|Q1AXR6_RUBXD Amine oxidase OS=Rubrobacter xylanophilus
           (strain DSM 9941 / NBRC 16129) GN=Rxyl_0845 PE=4 SV=1
          Length = 492

 Score = 33.9 bits (76), Expect = 8.0
 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
 Frame = +1

Query: 67  TMPSMAVDAGFSSLPFAPLPHLSERISRGRPSKLFRAIDGGIAHDKLSKEKLNCTGGISE 246
           T P MA + G S L   P+PHL   +  GR    FR    G+  ++   ++    G +  
Sbjct: 355 TDPGMAPEGGDSLLVLVPVPHLGGGVDWGREEAGFRERVYGLLEERCGIDR----GSVLY 410

Query: 247 EPRTSTILECSEHHRKEDGSSPSWFKLASQLV-------PVATQGEASACFVTASTIDGT 405
           E +  T  +  E +  E G++   F L   ++       P+A++      FV AST  GT
Sbjct: 411 E-KVRTPEDWREEYNLEKGAA---FGLGHGILQVGYFRPPLASRSVKGLYFVGASTHPGT 466