DK950430 |
Clone id |
TST38A01NGRL0008_K05 |
Library |
TST38 |
Length |
646 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_K05. 5' end sequence. |
Accession |
DK950430 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
CGTAGAGAAAATTCTGCGCTCCAAAATCTATCAGAACACTTACTGGAAAGAGCAGTGCTT TGGTCTCACAGCTGAAACACTTGTTGATAAAGCCATGGAATTGGACCATTTTGGAGGTAC CTTTGGAGGTAATCGAAAATCAACTCCCTTCATGTGTCTCACACTGAAGATGCTTCAAAT CCAGCCAGAAAAAGAGATAGTGGTGGAGTTCATAAAGAACGAGGATTACAAGTATGTGCG AATCTTGGGTGCTTTCTACTTGAGACTGGTGGGCAAGGCCACAGACGTGTATCAATACTT AGAACCTTTGTACAATGATTACAGAAAACTTCGTAGAATGAACTCAGATGGAGGGTTCTG TTTGTGCCATGTGGATGAATTTATTGACGAGCTACTAATTTCAGACTACAGTTGTGATAT TGCATTGCCACGGGTTCCTAAAAGGTATACTCTGGAGGCAAGTGCTGTGCTTGAGCCACG TCGAAGTGCTTTAGAGGATGACTTCGAGGATGAAGAAGAAAAAGAGGATGAAGAAGATCC AGTAGAAGCATTGGAGATTTTGGAGTTAGAAAAAGAACGCAGGAGAAGTCCTCAAAGGGA GAGGGACAGAGATAGGGACAGGCGTGATGGCTACAGAGACAGGGAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5RDD2 |
Definition |
sp|Q5RDD2|PR38A_PONAB Pre-mRNA-splicing factor 38A OS=Pongo abelii |
Align length |
164 |
Score (bit) |
238.0 |
E-value |
2.0e-62 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RTY4 |
Definition |
tr|A9RTY4|A9RTY4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
164 |
Score (bit) |
299.0 |
E-value |
1.0e-79 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950430|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0008_K05, 5' (646 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RTY4|A9RTY4_PHYPA Predicted protein OS=Physcomitrella paten... 299 1e-79 tr|B8LLN1|B8LLN1_PICSI Putative uncharacterized protein OS=Picea... 297 3e-79 tr|A7PRX0|A7PRX0_VITVI Chromosome chr14 scaffold_27, whole genom... 285 2e-75 tr|A5C7T6|A5C7T6_VITVI Putative uncharacterized protein OS=Vitis... 285 2e-75 tr|A2Q158|A2Q158_MEDTR PRP38 OS=Medicago truncatula GN=MtrDRAFT_... 280 7e-74 tr|B6TYH0|B6TYH0_MAIZE Pre-mRNA processing factor OS=Zea mays PE... 278 2e-73 tr|Q69K06|Q69K06_ORYSJ Os09g0103600 protein OS=Oryza sativa subs... 275 2e-72 tr|B8BCS7|B8BCS7_ORYSI Putative uncharacterized protein OS=Oryza... 275 2e-72 tr|Q8LB54|Q8LB54_ARATH Putative uncharacterized protein OS=Arabi... 268 2e-70 tr|Q2QKC4|Q2QKC4_WHEAT Pre-mRNA processing factor OS=Triticum ae... 268 2e-70 tr|Q0WQD7|Q0WQD7_ARATH Putative uncharacterized protein At2g4065... 267 4e-70 tr|Q7XJN2|Q7XJN2_ARATH At2g40650 protein OS=Arabidopsis thaliana... 262 2e-68 tr|A3BVX7|A3BVX7_ORYSJ Putative uncharacterized protein OS=Oryza... 257 5e-67 tr|A7SXQ7|A7SXQ7_NEMVE Predicted protein (Fragment) OS=Nematoste... 239 1e-61 tr|Q4SZ28|Q4SZ28_TETNG Chromosome undetermined SCAF11859, whole ... 236 7e-61 tr|B2RTE3|B2RTE3_MOUSE MCG17981 OS=Mus musculus GN=Prpf38a PE=2 ... 236 9e-61 tr|B3SEX8|B3SEX8_TRIAD Putative uncharacterized protein OS=Trich... 236 9e-61 tr|B3S4R2|B3S4R2_TRIAD Putative uncharacterized protein OS=Trich... 236 9e-61 tr|Q6IP13|Q6IP13_XENLA LOC432312 protein (Fragment) OS=Xenopus l... 235 2e-60 tr|B0JYW3|B0JYW3_XENTR Putative uncharacterized protein LOC54989... 234 3e-60 tr|A9UMD4|A9UMD4_XENTR LOC100135318 protein OS=Xenopus tropicali... 234 3e-60 tr|Q17D08|Q17D08_AEDAE Putative uncharacterized protein OS=Aedes... 233 1e-59 tr|Q7PX02|Q7PX02_ANOGA AGAP001145-PA OS=Anopheles gambiae GN=AGA... 232 2e-59 tr|B5X2T8|B5X2T8_SALSA Pre-mRNA-splicing factor 38A OS=Salmo sal... 229 1e-58 tr|A4RRH8|A4RRH8_OSTLU Predicted protein OS=Ostreococcus lucimar... 229 1e-58 tr|B0WP85|B0WP85_CULQU PRP38 pre-mRNA processing factor 38 domai... 229 1e-58 tr|B7QBZ1|B7QBZ1_IXOSC Pre-mRNA-splicing factor 38A, putative OS... 228 3e-58 tr|A8IJK3|A8IJK3_CHLRE Pre-mRNA splicing factor (Fragment) OS=Ch... 227 5e-58 tr|B6MPU3|B6MPU3_BRAFL Putative uncharacterized protein OS=Branc... 223 8e-57 tr|B6MPT3|B6MPT3_BRAFL Putative uncharacterized protein OS=Branc... 223 8e-57
>tr|A9RTY4|A9RTY4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_119303 PE=4 SV=1 Length = 357
Score = 299 bits (765), Expect = 1e-79 Identities = 144/164 (87%), Positives = 154/164 (93%) Frame = +2
Query: 2 VEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHFGGTFGGNRKSTPFMCLTLKMLQI 181 VEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHFGGT+GGNRK+TPFMCLTLKMLQI Sbjct: 21 VEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHFGGTYGGNRKATPFMCLTLKMLQI 80
Query: 182 QPEKEIVVEFIKNEDYKYVRILGAFYLRLVGKATDVYQYLEPLYNDYRKLRRMNSDGGFC 361 QPEKEIVVEFIKNEDYKYVRILGAFYLRLVGK TDVYQYLEPLYNDYRKLRR S+GG+ Sbjct: 81 QPEKEIVVEFIKNEDYKYVRILGAFYLRLVGKPTDVYQYLEPLYNDYRKLRRRTSEGGYI 140
Query: 362 LCHVDEFIDELLISDYSCDIALPRVPKRYTLEASAVLEPRRSAL 493 L VDEFIDELL ++YSCDIALPRVPKR+TLE + +L+ RRSAL Sbjct: 141 LARVDEFIDELLTTEYSCDIALPRVPKRWTLETTGLLDQRRSAL 184
>tr|B8LLN1|B8LLN1_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 400
Score = 297 bits (761), Expect = 3e-79 Identities = 144/164 (87%), Positives = 152/164 (92%) Frame = +2
Query: 2 VEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHFGGTFGGNRKSTPFMCLTLKMLQI 181 VEKILRSKIYQN+YWKEQCFGLTAETLVDKAMELDHFGGT GGNRK+TPFMCL +KMLQI Sbjct: 21 VEKILRSKIYQNSYWKEQCFGLTAETLVDKAMELDHFGGTHGGNRKATPFMCLMMKMLQI 80
Query: 182 QPEKEIVVEFIKNEDYKYVRILGAFYLRLVGKATDVYQYLEPLYNDYRKLRRMNSDGGFC 361 QPEKEIVVEFIKNEDYKYVRILGA YLRLVGK TDVYQYLEPLYNDYRKLRR +DG F Sbjct: 81 QPEKEIVVEFIKNEDYKYVRILGALYLRLVGKPTDVYQYLEPLYNDYRKLRRKLADGSFA 140
Query: 362 LCHVDEFIDELLISDYSCDIALPRVPKRYTLEASAVLEPRRSAL 493 L HVDEFIDELL +DY+CD+ALPRVPKR+TLEAS LEPRRSAL Sbjct: 141 LSHVDEFIDELLTTDYACDVALPRVPKRWTLEASGQLEPRRSAL 184
>tr|A7PRX0|A7PRX0_VITVI Chromosome chr14 scaffold_27, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00022667001 PE=4 SV=1 Length = 372
Score = 285 bits (729), Expect = 2e-75 Identities = 138/164 (84%), Positives = 146/164 (89%) Frame = +2
Query: 2 VEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHFGGTFGGNRKSTPFMCLTLKMLQI 181 VEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDH GGTFGGNRK TPFMCL +KMLQI Sbjct: 21 VEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQI 80
Query: 182 QPEKEIVVEFIKNEDYKYVRILGAFYLRLVGKATDVYQYLEPLYNDYRKLRRMNSDGGFC 361 QPEK+IVVEFIKNE+YKYVRILGAFYLRL G TDVYQYLEPLYNDYRKLRR SDG + Sbjct: 81 QPEKDIVVEFIKNEEYKYVRILGAFYLRLTGIDTDVYQYLEPLYNDYRKLRRKLSDGNYS 140
Query: 362 LCHVDEFIDELLISDYSCDIALPRVPKRYTLEASAVLEPRRSAL 493 L HVDE IDELL DYSCD+ALPR+ KR+TLE+ LEPRRSAL Sbjct: 141 LTHVDEVIDELLTKDYSCDVALPRIKKRWTLESLGTLEPRRSAL 184
>tr|A5C7T6|A5C7T6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013614 PE=4 SV=1 Length = 235
Score = 285 bits (729), Expect = 2e-75 Identities = 138/164 (84%), Positives = 146/164 (89%) Frame = +2
Query: 2 VEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHFGGTFGGNRKSTPFMCLTLKMLQI 181 VEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDH GGTFGGNRK TPFMCL +KMLQI Sbjct: 21 VEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQI 80
Query: 182 QPEKEIVVEFIKNEDYKYVRILGAFYLRLVGKATDVYQYLEPLYNDYRKLRRMNSDGGFC 361 QPEK+IVVEFIKNE+YKYVRILGAFYLRL G TDVYQYLEPLYNDYRKLRR SDG + Sbjct: 81 QPEKDIVVEFIKNEEYKYVRILGAFYLRLTGIDTDVYQYLEPLYNDYRKLRRKLSDGNYS 140
Query: 362 LCHVDEFIDELLISDYSCDIALPRVPKRYTLEASAVLEPRRSAL 493 L HVDE IDELL DYSCD+ALPR+ KR+TLE+ LEPRRSAL Sbjct: 141 LTHVDEVIDELLTKDYSCDVALPRIKKRWTLESLGTLEPRRSAL 184
>tr|A2Q158|A2Q158_MEDTR PRP38 OS=Medicago truncatula GN=MtrDRAFT_AC147963g34v2 PE=4 SV=1 Length = 385
Score = 280 bits (715), Expect = 7e-74 Identities = 134/164 (81%), Positives = 145/164 (88%) Frame = +2
Query: 2 VEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHFGGTFGGNRKSTPFMCLTLKMLQI 181 VEKILRSKIYQ+TYWKEQCFGLTAETLVDKAMELDH GGT+GGNRK TPFMCL +KMLQI Sbjct: 21 VEKILRSKIYQHTYWKEQCFGLTAETLVDKAMELDHLGGTYGGNRKPTPFMCLVMKMLQI 80
Query: 182 QPEKEIVVEFIKNEDYKYVRILGAFYLRLVGKATDVYQYLEPLYNDYRKLRRMNSDGGFC 361 QPEKEIV+EFIKN+DYKYVRILGAFYLRL G TDVY YLEPLYNDYRKLRR DG F Sbjct: 81 QPEKEIVIEFIKNDDYKYVRILGAFYLRLTGSDTDVYHYLEPLYNDYRKLRRKLPDGQFA 140
Query: 362 LCHVDEFIDELLISDYSCDIALPRVPKRYTLEASAVLEPRRSAL 493 L HVDE IDELL +DYSCDIA+PR+ KR+TLE+ LEPR+SAL Sbjct: 141 LTHVDEVIDELLTTDYSCDIAMPRIKKRWTLESLGALEPRQSAL 184
>tr|B6TYH0|B6TYH0_MAIZE Pre-mRNA processing factor OS=Zea mays PE=2 SV=1 Length = 389
Score = 278 bits (712), Expect = 2e-73 Identities = 133/164 (81%), Positives = 144/164 (87%) Frame = +2
Query: 2 VEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHFGGTFGGNRKSTPFMCLTLKMLQI 181 VEKI+RSKIYQ+TYWKEQCFGLTAETLVDKAMELDH GGT+GGNRK TPF+CL LKMLQI Sbjct: 21 VEKIVRSKIYQSTYWKEQCFGLTAETLVDKAMELDHTGGTYGGNRKPTPFLCLALKMLQI 80
Query: 182 QPEKEIVVEFIKNEDYKYVRILGAFYLRLVGKATDVYQYLEPLYNDYRKLRRMNSDGGFC 361 QP+K+IVVEFIKNEDYKYVR+LGAFYLRL G DVYQYLEPLYNDYRK+R SDG F Sbjct: 81 QPDKDIVVEFIKNEDYKYVRVLGAFYLRLTGTIADVYQYLEPLYNDYRKIRHKLSDGQFT 140
Query: 362 LCHVDEFIDELLISDYSCDIALPRVPKRYTLEASAVLEPRRSAL 493 L HVDEFIDELL DYSCD A+PR+ KR+ LEAS LEPRRSAL Sbjct: 141 LTHVDEFIDELLTKDYSCDTAMPRIQKRWVLEASGTLEPRRSAL 184
>tr|Q69K06|Q69K06_ORYSJ Os09g0103600 protein OS=Oryza sativa subsp. japonica GN=P0414D03.36 PE=4 SV=1 Length = 392
Score = 275 bits (702), Expect = 2e-72 Identities = 131/164 (79%), Positives = 142/164 (86%) Frame = +2
Query: 2 VEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHFGGTFGGNRKSTPFMCLTLKMLQI 181 VEKI+RSKIYQ+TYWKEQCFGLTAETLVDKAMELDH GGT+GGNRK TPF+CL LKMLQI Sbjct: 21 VEKIVRSKIYQSTYWKEQCFGLTAETLVDKAMELDHTGGTYGGNRKPTPFLCLALKMLQI 80
Query: 182 QPEKEIVVEFIKNEDYKYVRILGAFYLRLVGKATDVYQYLEPLYNDYRKLRRMNSDGGFC 361 QP+K+IVVEFIKNEDYKYVR+LGAFYLRL DVYQYLEPLYNDYRK+R SDG F Sbjct: 81 QPDKDIVVEFIKNEDYKYVRVLGAFYLRLTATVADVYQYLEPLYNDYRKIRHKLSDGKFT 140
Query: 362 LCHVDEFIDELLISDYSCDIALPRVPKRYTLEASAVLEPRRSAL 493 L HVDEFID+LL DYSCD ALPR+ KR+ LE S LEPRRSAL Sbjct: 141 LTHVDEFIDDLLTKDYSCDTALPRIQKRWVLETSGTLEPRRSAL 184
>tr|B8BCS7|B8BCS7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30348 PE=4 SV=1 Length = 392
Score = 275 bits (702), Expect = 2e-72 Identities = 131/164 (79%), Positives = 142/164 (86%) Frame = +2
Query: 2 VEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHFGGTFGGNRKSTPFMCLTLKMLQI 181 VEKI+RSKIYQ+TYWKEQCFGLTAETLVDKAMELDH GGT+GGNRK TPF+CL LKMLQI Sbjct: 21 VEKIVRSKIYQSTYWKEQCFGLTAETLVDKAMELDHTGGTYGGNRKPTPFLCLALKMLQI 80
Query: 182 QPEKEIVVEFIKNEDYKYVRILGAFYLRLVGKATDVYQYLEPLYNDYRKLRRMNSDGGFC 361 QP+K+IVVEFIKNEDYKYVR+LGAFYLRL DVYQYLEPLYNDYRK+R SDG F Sbjct: 81 QPDKDIVVEFIKNEDYKYVRVLGAFYLRLTATVADVYQYLEPLYNDYRKIRHKLSDGKFT 140
Query: 362 LCHVDEFIDELLISDYSCDIALPRVPKRYTLEASAVLEPRRSAL 493 L HVDEFID+LL DYSCD ALPR+ KR+ LE S LEPRRSAL Sbjct: 141 LTHVDEFIDDLLTKDYSCDTALPRIQKRWVLETSGTLEPRRSAL 184
>tr|Q8LB54|Q8LB54_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1 Length = 355
Score = 268 bits (686), Expect = 2e-70 Identities = 128/164 (78%), Positives = 145/164 (88%) Frame = +2
Query: 2 VEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHFGGTFGGNRKSTPFMCLTLKMLQI 181 VEKI+R+KIYQ+T+WKEQCFGLTAETLVDKAMELDH GGTFGG+RK TPF+CL LKMLQI Sbjct: 21 VEKIVRTKIYQHTFWKEQCFGLTAETLVDKAMELDHLGGTFGGSRKPTPFLCLILKMLQI 80
Query: 182 QPEKEIVVEFIKNEDYKYVRILGAFYLRLVGKATDVYQYLEPLYNDYRKLRRMNSDGGFC 361 QPEKEIVVEFIKN+DYKYVRILGAFYLRL G DVY+YLEPLYNDYRK+R+ SDG F Sbjct: 81 QPEKEIVVEFIKNDDYKYVRILGAFYLRLTGTDVDVYRYLEPLYNDYRKVRQKLSDGKFS 140
Query: 362 LCHVDEFIDELLISDYSCDIALPRVPKRYTLEASAVLEPRRSAL 493 L HVDE I+ELL DYSCDIA+PR+ KR+TLE + +LEPR+S L Sbjct: 141 LTHVDEVIEELLTKDYSCDIAMPRLKKRWTLEQNGLLEPRKSVL 184
>tr|Q2QKC4|Q2QKC4_WHEAT Pre-mRNA processing factor OS=Triticum aestivum GN=Prp38 PE=2 SV=1 Length = 393
Score = 268 bits (685), Expect = 2e-70 Identities = 129/164 (78%), Positives = 142/164 (86%) Frame = +2
Query: 2 VEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHFGGTFGGNRKSTPFMCLTLKMLQI 181 VEKI+R+KIYQ+ YWKEQCFGLTAETLVDKAMELD+ GGT GGNR+ TPF+CL LKMLQI Sbjct: 21 VEKIVRAKIYQSNYWKEQCFGLTAETLVDKAMELDYTGGTHGGNRRPTPFLCLALKMLQI 80
Query: 182 QPEKEIVVEFIKNEDYKYVRILGAFYLRLVGKATDVYQYLEPLYNDYRKLRRMNSDGGFC 361 QP+KEIVVEFIK+EDYKYVR+LGAFYLRL G DVYQYLEPLYNDYRK+R+ SDG F Sbjct: 81 QPDKEIVVEFIKDEDYKYVRVLGAFYLRLTGTVADVYQYLEPLYNDYRKIRQKLSDGKFT 140
Query: 362 LCHVDEFIDELLISDYSCDIALPRVPKRYTLEASAVLEPRRSAL 493 L HVDEFIDELL DYSC ALPR+ KR+ LEAS LEPRRSAL Sbjct: 141 LTHVDEFIDELLTKDYSCGTALPRIQKRWILEASGTLEPRRSAL 184
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