BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950438|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_K13, 5'
         (578 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q98PK6|RS4_MYCPU 30S ribosomal protein S4 OS=Mycoplasma pulmo...    32   3.0  

>sp|Q98PK6|RS4_MYCPU 30S ribosomal protein S4 OS=Mycoplasma pulmonis
           GN=rpsD PE=3 SV=1
          Length = 199

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -2

Query: 421 KKRSFACGAKGQRRTPFKKK*VLMVQRTSTKALFGVVAL*FTPSHKSS 278
           KKR++A G  GQRRT      + + ++   K L+GV    F  S K S
Sbjct: 30  KKRNYAPGQHGQRRTKLSDYGLHLYEKQKVKNLYGVNERQFANSFKKS 77

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950438|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_K13, 5'
         (578 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0P0G2|A0P0G2_9RHOB Transcriptional regulatory protein OS=Lab...    45   0.003
tr|Q1YII1|Q1YII1_MOBAS Putative uncharacterized protein OS=Manga...    32   5.8  

>tr|A0P0G2|A0P0G2_9RHOB Transcriptional regulatory protein
           OS=Labrenzia aggregata IAM 12614 GN=SIAM614_30706 PE=4
           SV=1
          Length = 242

 Score = 45.1 bits (105), Expect = 0.003
 Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
 Frame = -1

Query: 257 EFGPLR-PLWRARFNLLVARS---IGFGSNRNNAEDSTSLRLHLMA*AAVPIYSLTHYA- 93
           E GPL  P++  RF++ VA +   + FG+    A+++T+ RL +    A+ +   T Y+ 
Sbjct: 163 EVGPLLYPVYLDRFDVFVASADDEVSFGT----ADETTAARLGIKPGEAIAVIERTAYSI 218

Query: 92  KGTPLKWKVRQARADNAKLRSRV 24
           KGTPL+W++ +  A+  + RSR+
Sbjct: 219 KGTPLEWRIARGPANRFRYRSRI 241


>tr|Q1YII1|Q1YII1_MOBAS Putative uncharacterized protein
           OS=Manganese-oxidizing bacterium (strain SI85-9A1)
           GN=SI859A1_01496 PE=4 SV=1
          Length = 100

 Score = 32.3 bits (72), Expect(2) = 5.8
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 220 STCSWLDQSVSGQIETTPK-IQPHYAY 143
           STCSWLD SVSG I  T + +Q  + Y
Sbjct: 7   STCSWLDHSVSGLIRRTERPVQTRFRY 33



 Score = 21.6 bits (44), Expect(2) = 5.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 110 SLTHYAKGT 84
           SLTHY KGT
Sbjct: 47  SLTHYTKGT 55