DK950438
Clone id TST38A01NGRL0008_K13
Library
Length 613
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_K13. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
GCCACTAATGTTTGCCTTGAGCGAACCCTTGAGCGAAGCTTCGCGTTGTCGGCTCTTGCT
TGGCGCACTTTCCACTTTAACGGCGTACCTTTTGCATAATGGGTCAGCGAGTAAATGGGA
ACAGCGGCTTAAGCCATTAGGTGTAGGCGTAATGAGGTTGAATCTTCGGCGTTGTTTCTA
TTTGACCCGAAACCGATTGATCTAGCCACGAGCAGGTTGAATCGAGCTCTCCACAGAGGC
CTTAGAGGACCGAACTCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGA
ATCAAAGAGCTACGACTCCAAAAAGTGCCTTTGTTGAAGTCCTTTGGACCATAAGAACCT
ATTTTTTTTTAAAAGGAGTCCTCCTTTGGCCTTTCGCCCCACAAGCAAAAGAACGCTTTT
TCAATAACTGGCTCATAACGGTGAAACCAGCTGTTTCTGGAAGTAATGGCCACACCGTGG
GAAGTCATGAAAGCTTCTCCCCCTTTGTTGCTTGCGGTTGAGTGCCCTTTTTTGCCCTCA
ACAAAAGATAAAGTTGTTTTGAAAAAACACCTTGTCCCTCTTTTCTTTTCTTTTCTCTAC
GCTACAAGCTAGC
■■Homology search results ■■ -
sp_hit_id Q98PK6
Definition sp|Q98PK6|RS4_MYCPU 30S ribosomal protein S4 OS=Mycoplasma pulmonis
Align length 48
Score (bit) 31.6
E-value 3.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950438|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_K13, 5'
(578 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q98PK6|RS4_MYCPU 30S ribosomal protein S4 OS=Mycoplasma pulmo... 32 3.0

>sp|Q98PK6|RS4_MYCPU 30S ribosomal protein S4 OS=Mycoplasma pulmonis
GN=rpsD PE=3 SV=1
Length = 199

Score = 31.6 bits (70), Expect = 3.0
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -2

Query: 421 KKRSFACGAKGQRRTPFKKK*VLMVQRTSTKALFGVVAL*FTPSHKSS 278
KKR++A G GQRRT + + ++ K L+GV F S K S
Sbjct: 30 KKRNYAPGQHGQRRTKLSDYGLHLYEKQKVKNLYGVNERQFANSFKKS 77


tr_hit_id A0P0G2
Definition tr|A0P0G2|A0P0G2_9RHOB Transcriptional regulatory protein OS=Labrenzia aggregata IAM 12614
Align length 83
Score (bit) 45.1
E-value 0.003
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950438|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_K13, 5'
(578 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0P0G2|A0P0G2_9RHOB Transcriptional regulatory protein OS=Lab... 45 0.003
tr|Q1YII1|Q1YII1_MOBAS Putative uncharacterized protein OS=Manga... 32 5.8

>tr|A0P0G2|A0P0G2_9RHOB Transcriptional regulatory protein
OS=Labrenzia aggregata IAM 12614 GN=SIAM614_30706 PE=4
SV=1
Length = 242

Score = 45.1 bits (105), Expect = 0.003
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Frame = -1

Query: 257 EFGPLR-PLWRARFNLLVARS---IGFGSNRNNAEDSTSLRLHLMA*AAVPIYSLTHYA- 93
E GPL P++ RF++ VA + + FG+ A+++T+ RL + A+ + T Y+
Sbjct: 163 EVGPLLYPVYLDRFDVFVASADDEVSFGT----ADETTAARLGIKPGEAIAVIERTAYSI 218

Query: 92 KGTPLKWKVRQARADNAKLRSRV 24
KGTPL+W++ + A+ + RSR+
Sbjct: 219 KGTPLEWRIARGPANRFRYRSRI 241


>tr|Q1YII1|Q1YII1_MOBAS Putative uncharacterized protein
OS=Manganese-oxidizing bacterium (strain SI85-9A1)
GN=SI859A1_01496 PE=4 SV=1
Length = 100

Score = 32.3 bits (72), Expect(2) = 5.8
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -2

Query: 220 STCSWLDQSVSGQIETTPK-IQPHYAY 143
STCSWLD SVSG I T + +Q + Y
Sbjct: 7 STCSWLDHSVSGLIRRTERPVQTRFRY 33



Score = 21.6 bits (44), Expect(2) = 5.8
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -1

Query: 110 SLTHYAKGT 84
SLTHY KGT
Sbjct: 47 SLTHYTKGT 55