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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950469
Clone id TST38A01NGRL0008_L20
Library
Length 699
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_L20. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
AGCAGATCCAGCAGCCTATCGGGCGGTAGCACTCCTACTTGCTCATCAGGTGGCTTGGGC
TCAGCCTTTGGTTCTCCGTTTTCTGTAGCCATGAGTTATCGCAGCTCGGACTGCCATTCT
CAAGATGAATTTGCAATGCGGCTTGGCCACTATCTTCAGCAGAGTCATGGAGGTGAGCCA
AAGGATGATTATGGCATGGCACAGTACAGTTCTTCATTCAATGAGAAGAATGATGAAAAC
CAGCAAATACATCACATGGCTACTAGTAAGGTCCATCTGCCAGGGGTCACACTAGATGAT
GATGATGATGATGATGGCAGGGAAGCTATGTGTTTACATGAGCACAGAGAGATGCATGCG
TTTGGTAAGTCAGCAATATGCATAGAAGAGGAGCTGGTATGGAGCAAAGAGGAGTACCAA
GAGATCGACAGTGACTCTAGCTCAGATTTATTTGATTTGGATAGCCTGCCTGGACGCAAC
AAAACGGAGCGAGCAGCAGATCGTGGTCTCCCCGTCTTCGAAGTGCCAAAGTTTTCTTCT
AAGAAGAGCGTGCGCCTATGTCCAAGCTATTTGCTCCCTCTAAAGAGCAAACCATGAGCT
GTTTTTTGGCCTTCGCAGGCTTGGATCGTTTGGGAGGACCATTGGATTTAAGCTAGTTGT
GAGCCTCAAACTCTTGTTAAGAATGGTCATCTTCTGTTG
■■Homology search results ■■ -
sp_hit_id P03957
Definition sp|P03957|MMP3_RAT Stromelysin-1 OS=Rattus norvegicus
Align length 31
Score (bit) 31.6
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950469|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_L20, 5'
         (699 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P03957|MMP3_RAT Stromelysin-1 OS=Rattus norvegicus GN=Mmp3 PE...    32   4.3  
sp|Q9R1K2|TEN2_RAT Teneurin-2 OS=Rattus norvegicus GN=Odz2 PE=2 ...    31   7.3  
sp|Q9WTS5|TEN2_MOUSE Teneurin-2 OS=Mus musculus GN=Odz2 PE=2 SV=1      31   7.3  
sp|Q9NT68|TEN2_HUMAN Teneurin-2 OS=Homo sapiens GN=ODZ2 PE=1 SV=2      31   7.3  
sp|Q9DER5|TEN2_CHICK Teneurin-2 OS=Gallus gallus GN=ODZ2 PE=2 SV=1     31   7.3  

>sp|P03957|MMP3_RAT Stromelysin-1 OS=Rattus norvegicus GN=Mmp3 PE=1
           SV=1
          Length = 475

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -3

Query: 208 CTVPCHNHPLAHLHDSAEDSGQAALQIHLEN 116
           CT  C ++PL   H S ED+G   LQ +LEN
Sbjct: 11  CTAVCSSYPL---HGSEEDAGMEVLQKYLEN 38


>sp|Q9R1K2|TEN2_RAT Teneurin-2 OS=Rattus norvegicus GN=Odz2 PE=2
           SV=2
          Length = 2774

 Score = 30.8 bits (68), Expect = 7.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -3

Query: 235 HHSSH*MKNCTVPCHNHPLAHLHDSAEDSGQAAL-----QIHLENGSPS 104
           HHS   ++    P HNH L+H H SA    + +L     QIH    +P+
Sbjct: 242 HHSQSTLRPPLPPPHNHTLSHHHSSANSLNRNSLTNRRSQIHAPAPAPN 290


>sp|Q9WTS5|TEN2_MOUSE Teneurin-2 OS=Mus musculus GN=Odz2 PE=2 SV=1
          Length = 2764

 Score = 30.8 bits (68), Expect = 7.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -3

Query: 235 HHSSH*MKNCTVPCHNHPLAHLHDSAEDSGQAAL-----QIHLENGSPS 104
           HHS   ++    P HNH L+H H SA    + +L     QIH    +P+
Sbjct: 242 HHSQSTLRPPLPPPHNHTLSHHHSSANSLNRNSLTNRRSQIHAPAPAPN 290


>sp|Q9NT68|TEN2_HUMAN Teneurin-2 OS=Homo sapiens GN=ODZ2 PE=1 SV=2
          Length = 2774

 Score = 30.8 bits (68), Expect = 7.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -3

Query: 235 HHSSH*MKNCTVPCHNHPLAHLHDSAEDSGQAAL-----QIHLENGSPS 104
           HHS   ++    P HNH L+H H SA    + +L     QIH    +P+
Sbjct: 242 HHSQSTLRPPLPPPHNHTLSHHHSSANSLNRNSLTNRRSQIHAPAPAPN 290


>sp|Q9DER5|TEN2_CHICK Teneurin-2 OS=Gallus gallus GN=ODZ2 PE=2 SV=1
          Length = 2802

 Score = 30.8 bits (68), Expect = 7.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -3

Query: 235 HHSSH*MKNCTVPCHNHPLAHLHDSAEDSGQAAL-----QIHLENGSPS 104
           HHS   ++    P HNH L+H H SA    + +L     QIH    +P+
Sbjct: 270 HHSQSTLRPPLPPPHNHSLSHHHSSANSLNRNSLTNRRNQIHAPAPAPN 318
tr_hit_id Q57Z73
Definition tr|Q57Z73|Q57Z73_9TRYP Putative uncharacterized protein OS=Trypanosoma brucei
Align length 53
Score (bit) 34.3
E-value 7.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950469|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_L20, 5'
         (699 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q57Z73|Q57Z73_9TRYP Putative uncharacterized protein OS=Trypa...    34   7.9  

>tr|Q57Z73|Q57Z73_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb927.5.3200 PE=4 SV=1
          Length = 259

 Score = 34.3 bits (77), Expect = 7.9
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -3

Query: 211 NCTVPCHNHPLAHLHDSAEDSGQAALQIHLENGSPSCDNSWLQKTENQRLSPS 53
           NC  P H+H  +H H  + D G +    H     PS +   + +   Q L+P+
Sbjct: 151 NCNDPSHSHSHSHEHGHSHDHGHSHSHGHCHGHGPSQEQMMMMQMAMQSLTPA 203