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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950472
Clone id TST38A01NGRL0008_L23
Library
Length 609
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_L23. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
GAGCTTTTGCAGGGCGGTGTGGAAGGCAATTAGTAATTAATTAGTAATATAGGGTGCCTA
AGCTGAAATGGGTTTCGCTTAATCAAGAATATAGGTGCTTAATCTGAAGTGGGTTTTGCT
CATATTATACAGAGGTTGTGTACAAAATCGCATCACCGGCCACAACCGGATAAGAAACTG
TCAGGTCGTTTTGAAGTGAAGCTATAGTAACTAGCTCAATCAATGTGTGTGTAGCAGCTA
ACTCGCAGCCTTCTCTTGCAGTTTGCAGATAATTCCAGGTACATATGGATCATGTGGAGG
AGGCCAGGAGAGTGTTGTTCACAAGGGTCCAGAGCTTTGATTCTGAAAATGCCTTCAAGA
TCATGGGCTATCTACTACTGCAGGATTGGGGAGAGCAGGACTTGCTTCGAATAGCGTTAG
GCCCGGAGCCTGTTCTATATTCCATTATAGCTAAAGCAAAGAAAGAGCTGGGTTTAGTTG
TCAGCTTGCCAGCACTGTCGGTAGGACAACCTTACCCACAGGATGTTATTGACGACTTTC
CCCTATCTCACACACGAACTCATGTACACTCGCCCTCCCCCATTTCACCCTTCGAATGTA
AATCTCCCT
■■Homology search results ■■ -
sp_hit_id Q0D3J9
Definition sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica
Align length 71
Score (bit) 79.3
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950472|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_L23, 5'
         (609 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein...    79   1e-14
sp|Q10M00|C3H22_ORYSJ Zinc finger CCCH domain-containing protein...    78   4e-14
sp|Q10LZ9|C3H23_ORYSJ Zinc finger CCCH domain-containing protein...    72   3e-12
sp|Q6ZK57|C3H54_ORYSJ Zinc finger CCCH domain-containing protein...    42   0.002

>sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53
           OS=Oryza sativa subsp. japonica GN=Os07g0682400 PE=2
           SV=1
          Length = 682

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 37/71 (52%), Positives = 57/71 (80%)
 Frame = +3

Query: 300 EARRVLFTRVQSFDSENAFKIMGYLLLQDWGEQDLLRIALGPEPVLYSIIAKAKKELGLV 479
           EA +V+F+R+Q+ D ++A KIMG+LL+QD GE++++R+A GPE +L++++AKA+KELGL 
Sbjct: 5   EATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKELGL- 63

Query: 480 VSLPALSVGQP 512
             LPA   G P
Sbjct: 64  --LPASGPGTP 72


>sp|Q10M00|C3H22_ORYSJ Zinc finger CCCH domain-containing protein 22
           OS=Oryza sativa subsp. japonica GN=Os03g0328900 PE=2
           SV=2
          Length = 688

 Score = 77.8 bits (190), Expect = 4e-14
 Identities = 42/99 (42%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
 Frame = +3

Query: 300 EARRVLFTRVQSFDSENAFKIMGYLLLQDWGEQDLLRIALGPEPVLYSIIAKAKKELGLV 479
           EA +V+F+R+Q+ D ++A KIMG LL+QD G+++++R+A GPE +L+S++A+A+KEL L+
Sbjct: 5   EATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALL 64

Query: 480 VSLPALSVGQPYPQDVIDDFPLSHT---RTHVHSPSPIS 587
              P  S   P        F LS     R    SPSP+S
Sbjct: 65  PPPPPPSSSSPTVPAAHSPFLLSRQNSGRGPAPSPSPLS 103


>sp|Q10LZ9|C3H23_ORYSJ Zinc finger CCCH domain-containing protein 23
           OS=Oryza sativa subsp. japonica GN=Os03g0329200 PE=2
           SV=1
          Length = 677

 Score = 71.6 bits (174), Expect = 3e-12
 Identities = 33/73 (45%), Positives = 54/73 (73%)
 Frame = +3

Query: 300 EARRVLFTRVQSFDSENAFKIMGYLLLQDWGEQDLLRIALGPEPVLYSIIAKAKKELGLV 479
           EA +V+F+R+Q+ D ++A KIMG LL+QD G+++++R+A GPE +L+S++A+A+KEL L+
Sbjct: 5   EATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALL 64

Query: 480 VSLPALSVGQPYP 518
               A S     P
Sbjct: 65  PPPQAASSSPTVP 77


>sp|Q6ZK57|C3H54_ORYSJ Zinc finger CCCH domain-containing protein 54
           OS=Oryza sativa subsp. japonica GN=Os08g0126700 PE=2
           SV=2
          Length = 653

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 22/62 (35%), Positives = 36/62 (58%)
 Frame = +3

Query: 294 VEEARRVLFTRVQSFDSENAFKIMGYLLLQDWGEQDLLRIALGPEPVLYSIIAKAKKELG 473
           V E  ++ F RVQ  + E+  KI G +LL++  E +L+++A GPE  L + I   K  L 
Sbjct: 52  VPELVKLAFARVQRVEPEHVGKIFGVMLLREPDEDELVQLAYGPEATLLAKIEDTKAALT 111

Query: 474 LV 479
           ++
Sbjct: 112 VI 113
tr_hit_id A7Q1Y9
Definition tr|A7Q1Y9|A7Q1Y9_VITVI Chromosome chr13 scaffold_45, whole genome shotgun sequence OS=Vitis vinifera
Align length 107
Score (bit) 87.0
E-value 7.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950472|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_L23, 5'
         (609 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7Q1Y9|A7Q1Y9_VITVI Chromosome chr13 scaffold_45, whole genom...    87   7e-16
tr|A5B9W5|A5B9W5_VITVI Putative uncharacterized protein OS=Vitis...    84   5e-15
tr|B7F3U2|B7F3U2_ORYSJ cDNA clone:J013002B05, full insert sequen...    79   2e-13
tr|A3BNH7|A3BNH7_ORYSJ Putative uncharacterized protein OS=Oryza...    79   2e-13
tr|A2YQ06|A2YQ06_ORYSI Putative uncharacterized protein OS=Oryza...    79   2e-13
tr|Q9SV09|Q9SV09_ARATH Putative uncharacterized protein F4F15.60...    79   2e-13
tr|Q8RXK0|Q8RXK0_ARATH Putative uncharacterized protein At3g5195...    79   2e-13
tr|Q8L9E0|Q8L9E0_ARATH Putative uncharacterized protein OS=Arabi...    79   2e-13
tr|Q6T284|Q6T284_9ROSI Predicted protein OS=Populus tremula x Po...    78   5e-13
tr|B8AP11|B8AP11_ORYSI Putative uncharacterized protein OS=Oryza...    78   5e-13
tr|B7ETE2|B7ETE2_ORYSJ cDNA clone:J033099F01, full insert sequen...    78   5e-13
tr|A3AHK0|A3AHK0_ORYSJ Putative uncharacterized protein OS=Oryza...    78   5e-13
tr|B6UER2|B6UER2_MAIZE Nucleic acid binding protein OS=Zea mays ...    77   8e-13
tr|A7PQV9|A7PQV9_VITVI Chromosome chr6 scaffold_25, whole genome...    75   3e-12
tr|A5C749|A5C749_VITVI Putative uncharacterized protein OS=Vitis...    75   3e-12
tr|B8AP12|B8AP12_ORYSI Putative uncharacterized protein OS=Oryza...    72   3e-11
tr|A3AHK1|A3AHK1_ORYSJ Putative uncharacterized protein OS=Oryza...    72   3e-11
tr|Q9LY70|Q9LY70_ARATH Putative uncharacterized protein MAA21_80...    70   7e-11
tr|Q6NKZ1|Q6NKZ1_ARATH At3g63450 OS=Arabidopsis thaliana PE=2 SV=1     70   7e-11
tr|A7Q340|A7Q340_VITVI Chromosome chr12 scaffold_47, whole genom...    68   5e-10
tr|Q9LJC2|Q9LJC2_ARATH Emb|CAB41315.1 OS=Arabidopsis thaliana PE...    66   2e-09
tr|A9RVK1|A9RVK1_PHYPA Predicted protein OS=Physcomitrella paten...    64   9e-09
tr|A9SY40|A9SY40_PHYPA Predicted protein OS=Physcomitrella paten...    62   2e-08
tr|Q8GS07|Q8GS07_ARATH Putative uncharacterized protein At5g1244...    62   3e-08
tr|B6UEB5|B6UEB5_MAIZE Nucleic acid binding protein OS=Zea mays ...    58   4e-07
tr|Q9C8K4|Q9C8K4_ARATH Putative uncharacterized protein F5D21.15...    56   2e-06
tr|Q3ECS2|Q3ECS2_ARATH Uncharacterized protein At1g51520.2 OS=Ar...    56   2e-06
tr|A7P0E3|A7P0E3_VITVI Chromosome chr19 scaffold_4, whole genome...    56   2e-06
tr|A5CBS7|A5CBS7_VITVI Putative uncharacterized protein OS=Vitis...    56   2e-06
tr|Q2QYE3|Q2QYE3_ORYSJ RNA recognition motif, putative, expresse...    55   2e-06

>tr|A7Q1Y9|A7Q1Y9_VITVI Chromosome chr13 scaffold_45, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028662001
           PE=4 SV=1
          Length = 610

 Score = 87.0 bits (214), Expect = 7e-16
 Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 4/107 (3%)
 Frame = +3

Query: 300 EARRVLFTRVQSFDSENAFKIMGYLLLQDWGEQDLLRIALGPEPVLYSIIAKAKKELGLV 479
           EA R++F+R+Q+ D ENA KIMG LL+QD GE++++R+A GPE +++S+I KA+KELG+ 
Sbjct: 5   EATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVILKARKELGIS 64

Query: 480 VSLPALSVGQPYPQDVIDDFPLSHTR----THVHSPSPISPFECKSP 608
            + P+       P   + + PLS +R    +   SPS  S F    P
Sbjct: 65  SNTPSTPSTPSSPSPFLSNNPLSQSRQTSFSSTSSPSSFSVFSDFQP 111


>tr|A5B9W5|A5B9W5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_031889 PE=4 SV=1
          Length = 682

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 39/86 (45%), Positives = 61/86 (70%)
 Frame = +3

Query: 300 EARRVLFTRVQSFDSENAFKIMGYLLLQDWGEQDLLRIALGPEPVLYSIIAKAKKELGLV 479
           EA R++F+R+Q+ D ENA KIMG LL+QD GE++++R+A GPE +++S+I KA+KELG+ 
Sbjct: 5   EATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVILKARKELGIS 64

Query: 480 VSLPALSVGQPYPQDVIDDFPLSHTR 557
            + P+       P   + + PLS +R
Sbjct: 65  SNTPSTPSTPSSPSPFLSNNPLSQSR 90


>tr|B7F3U2|B7F3U2_ORYSJ cDNA clone:J013002B05, full insert sequence
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 682

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 37/71 (52%), Positives = 57/71 (80%)
 Frame = +3

Query: 300 EARRVLFTRVQSFDSENAFKIMGYLLLQDWGEQDLLRIALGPEPVLYSIIAKAKKELGLV 479
           EA +V+F+R+Q+ D ++A KIMG+LL+QD GE++++R+A GPE +L++++AKA+KELGL 
Sbjct: 5   EATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKELGL- 63

Query: 480 VSLPALSVGQP 512
             LPA   G P
Sbjct: 64  --LPASGPGTP 72


>tr|A3BNH7|A3BNH7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_024599 PE=4 SV=1
          Length = 757

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 37/71 (52%), Positives = 57/71 (80%)
 Frame = +3

Query: 300 EARRVLFTRVQSFDSENAFKIMGYLLLQDWGEQDLLRIALGPEPVLYSIIAKAKKELGLV 479
           EA +V+F+R+Q+ D ++A KIMG+LL+QD GE++++R+A GPE +L++++AKA+KELGL 
Sbjct: 5   EATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKELGL- 63

Query: 480 VSLPALSVGQP 512
             LPA   G P
Sbjct: 64  --LPASGPGTP 72


>tr|A2YQ06|A2YQ06_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_27364 PE=4 SV=1
          Length = 721

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 37/71 (52%), Positives = 57/71 (80%)
 Frame = +3

Query: 300 EARRVLFTRVQSFDSENAFKIMGYLLLQDWGEQDLLRIALGPEPVLYSIIAKAKKELGLV 479
           EA +V+F+R+Q+ D ++A KIMG+LL+QD GE++++R+A GPE +L++++AKA+KELGL 
Sbjct: 5   EATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKELGL- 63

Query: 480 VSLPALSVGQP 512
             LPA   G P
Sbjct: 64  --LPASGPGTP 72


>tr|Q9SV09|Q9SV09_ARATH Putative uncharacterized protein F4F15.60
           (Putative uncharacterized protein At3g51950)
           OS=Arabidopsis thaliana GN=At3g51950 PE=2 SV=1
          Length = 540

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 36/60 (60%), Positives = 50/60 (83%)
 Frame = +3

Query: 300 EARRVLFTRVQSFDSENAFKIMGYLLLQDWGEQDLLRIALGPEPVLYSIIAKAKKELGLV 479
           EA R++ +R+QS D ENA KIMG LLLQD GE++++R+A GPE +++S+I KAKKELGL+
Sbjct: 5   EATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKELGLM 64


>tr|Q8RXK0|Q8RXK0_ARATH Putative uncharacterized protein At3g51950
           OS=Arabidopsis thaliana GN=At3g51950 PE=2 SV=1
          Length = 540

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 36/60 (60%), Positives = 50/60 (83%)
 Frame = +3

Query: 300 EARRVLFTRVQSFDSENAFKIMGYLLLQDWGEQDLLRIALGPEPVLYSIIAKAKKELGLV 479
           EA R++ +R+QS D ENA KIMG LLLQD GE++++R+A GPE +++S+I KAKKELGL+
Sbjct: 5   EATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKELGLM 64


>tr|Q8L9E0|Q8L9E0_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 540

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 36/60 (60%), Positives = 50/60 (83%)
 Frame = +3

Query: 300 EARRVLFTRVQSFDSENAFKIMGYLLLQDWGEQDLLRIALGPEPVLYSIIAKAKKELGLV 479
           EA R++ +R+QS D ENA KIMG LLLQD GE++++R+A GPE +++S+I KAKKELGL+
Sbjct: 5   EATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKELGLM 64


>tr|Q6T284|Q6T284_9ROSI Predicted protein OS=Populus tremula x
           Populus alba PE=2 SV=1
          Length = 705

 Score = 77.8 bits (190), Expect = 5e-13
 Identities = 41/92 (44%), Positives = 62/92 (67%)
 Frame = +3

Query: 303 ARRVLFTRVQSFDSENAFKIMGYLLLQDWGEQDLLRIALGPEPVLYSIIAKAKKELGLVV 482
           A R++F+R+Q+ D ENA KIMG LL+QD GE++++R+A GPE +++S+I KA+KELGL  
Sbjct: 6   ATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVILKARKELGL-S 64

Query: 483 SLPALSVGQPYPQDVIDDFPLSHTRTHVHSPS 578
           S   LS     P  +    P++ +R +  S S
Sbjct: 65  SPTNLSTSPSSPSPLYSSNPVAISRQNNSSTS 96


>tr|B8AP11|B8AP11_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_11406 PE=4 SV=1
          Length = 686

 Score = 77.8 bits (190), Expect = 5e-13
 Identities = 42/99 (42%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
 Frame = +3

Query: 300 EARRVLFTRVQSFDSENAFKIMGYLLLQDWGEQDLLRIALGPEPVLYSIIAKAKKELGLV 479
           EA +V+F+R+Q+ D ++A KIMG LL+QD G+++++R+A GPE +L+S++A+A+KEL L+
Sbjct: 5   EATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALL 64

Query: 480 VSLPALSVGQPYPQDVIDDFPLSHT---RTHVHSPSPIS 587
              P  S   P        F LS     R    SPSP+S
Sbjct: 65  PPPPPPSSSSPTVPAAHSPFLLSRQNSGRGPAPSPSPLS 103