DK950473 |
Clone id |
TST38A01NGRL0008_L24 |
Library |
TST38 |
Length |
641 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_L24. 5' end sequence. |
Accession |
DK950473 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL128Contig1 |
Sequence |
GTGAGCGTGAGGGCGGCCACACCCACAGCCCTCTGTGTAGCTACAACGCCGTCCCCTGCG TCGTCTTCGCGCTCGTTGTCATACCGCCTCCCCGCCATCAGAGGATCCCTTAAGCATCAG GGATGCAACACATCTAGCAGCTCCTCGCTTCAGGAGAGCCTACAGCGCATGGCTACCAAG ATCACTCAAAACCCTACCCTTCGCAATGCTGCTTTCTTTGCGATGAATGCCCTCTGGGCA GTGCCAGCCATAGCTGCAGAAGTCGCAGCAGAGGCAGAAGAGAAGGGAAAGATTTTCGAT TTTAATCTCACCCTCCCCATTATCGCGGCAGAGTTCCTGTTGCTCATGGTGACTTTGGAC AACATATGGTTTAAGCCTGTGGCCAAGGTTATGGATGACAGAGATGAAGCCATCAGGCAG AAGCTTATGAGTGTGCGCGACAATTCCGACGAGATCAAGAAGCTGCAAGAGCAGGCTGAG GCGATCCTCAAGGCCGCACGTGCAGAGACCACGGCGGAGCTCAACAAGATGAAGAGGGAG ACGGCAGCAAAGCTTGATGCCAAGCTTCAGGAATCACGCGAAAGAATAGAGAAAGAGCTT GCAGAAGCTATTGCAAACCTAGAGGTGCAGAAGCAGGAGAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P31853 |
Definition |
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea |
Align length |
119 |
Score (bit) |
135.0 |
E-value |
2.0e-31 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950473|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0008_L24, 5' (641 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spi... 135 2e-31 sp|P51245|ATPX_PORPU ATP synthase B' chain, chloroplastic OS=Por... 80 9e-15 sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Por... 80 1e-14 sp|Q05367|ATPX_SYNP1 ATP synthase B' chain OS=Synechococcus sp. ... 74 6e-13 sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Gui... 74 8e-13 sp|P48085|ATPX_CYAPA ATP synthase B' chain, cyanelle OS=Cyanopho... 73 1e-12 sp|P12410|ATPX_ANASP ATP synthase B' chain OS=Anabaena sp. (stra... 69 2e-11 sp|Q02852|ATPX_ANTSP ATP synthase B' chain, chloroplastic OS=Ant... 68 5e-11 sp|Q9TM29|ATPX_CYACA ATP synthase B' chain, chloroplastic OS=Cya... 67 1e-10 sp|P08446|ATPX_SYNP6 ATP synthase B' chain OS=Synechococcus sp. ... 65 2e-10 sp|P35012|ATPX_GALSU ATP synthase B' chain, chloroplastic OS=Gal... 65 3e-10 sp|P27183|ATPX_SYNY3 ATP synthase B' chain OS=Synechocystis sp. ... 62 2e-09 sp|Q00823|ATPX_ODOSI ATP synthase B' chain, chloroplastic OS=Odo... 61 6e-09 sp|Q40608|ATPX_OCHNE ATP synthase B' chain, chloroplastic OS=Och... 60 7e-09 sp|P21904|ATPF_PROMO ATP synthase B chain, sodium ion specific O... 53 1e-06 sp|P20601|ATPF_BACME ATP synthase B chain OS=Bacillus megaterium... 52 3e-06 sp|P41172|ATPF_THIFE ATP synthase B chain OS=Thiobacillus ferroo... 44 0.001 sp|Q7A0C4|ATPF_STAAW ATP synthase B chain OS=Staphylococcus aure... 42 0.004 sp|Q6G7K3|ATPF_STAAS ATP synthase B chain OS=Staphylococcus aure... 42 0.004 sp|Q6GEW8|ATPF_STAAR ATP synthase B chain OS=Staphylococcus aure... 42 0.004 sp|Q7A4E7|ATPF_STAAN ATP synthase B chain OS=Staphylococcus aure... 42 0.004 sp|Q99SF1|ATPF_STAAM ATP synthase B chain OS=Staphylococcus aure... 42 0.004 sp|Q5HE93|ATPF_STAAC ATP synthase B chain OS=Staphylococcus aure... 42 0.004 sp|O29104|VATE_ARCFU V-type ATP synthase subunit E OS=Archaeoglo... 41 0.005 sp|Q49Z54|ATPF_STAS1 ATP synthase B chain OS=Staphylococcus sapr... 41 0.006 sp|Q5SHB3|CNPD_THET8 2',3'-cyclic-nucleotide 2'-phosphodiesteras... 40 0.013 sp|Q72HM1|CNPD_THET2 2',3'-cyclic-nucleotide 2'-phosphodiesteras... 39 0.018 sp|Q48329|VATE_HALVO V-type ATP synthase subunit E OS=Halobacter... 39 0.023 sp|A7GTL0|SYFA_BACCN Phenylalanyl-tRNA synthetase alpha chain OS... 39 0.030 sp|Q02819|NUCB1_MOUSE Nucleobindin-1 OS=Mus musculus GN=Nucb1 PE... 39 0.030
>sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2 Length = 222
Score = 135 bits (340), Expect = 2e-31 Identities = 65/119 (54%), Positives = 91/119 (76%) Frame = +1
Query: 283 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 462 K +FDFNLTLPII AEFL LM LD I++ P+ MD RD +I+++L V+D S E+K+ Sbjct: 80 KASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRDASIKEQLSGVKDTSSEVKQ 139
Query: 463 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQE 639 L+EQA A+++AARAE +A LNKMK+ET +++AKL E R++IE EL EA+ +LE QK++ Sbjct: 140 LEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKKIEVELQEALGSLEQQKED 198
>sp|P51245|ATPX_PORPU ATP synthase B' chain, chloroplastic OS=Porphyra purpurea GN=atpG PE=3 SV=1 Length = 158
Score = 80.1 bits (196), Expect = 9e-15 Identities = 40/119 (33%), Positives = 73/119 (61%) Frame = +1
Query: 283 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 462 +G +FDFN TLP++A +FL+LM+ L+ I++KPV K++D+RDE IR L + + + Sbjct: 13 EGGLFDFNGTLPLMALQFLILMLLLNTIFYKPVTKILDERDEYIRTTLTTASSMLVKADE 72
Query: 463 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQE 639 L + E L AR + A++ +++ + + +++++ EK + EA L +QK+E Sbjct: 73 LAAKYEEDLSKARRDAQAKIAASQKDAQSIVSEDIKKAQMNAEKLITEASKQLNIQKEE 131
>sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Porphyra yezoensis GN=atpG PE=3 SV=1 Length = 156
Score = 79.7 bits (195), Expect = 1e-14 Identities = 44/119 (36%), Positives = 70/119 (58%) Frame = +1
Query: 283 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 462 +G +FDFN TLP++A +FL LMV L+ I++KPV KV+D+RDE IR L + + + Sbjct: 13 EGGLFDFNGTLPLMALQFLTLMVLLNTIFYKPVTKVLDERDEYIRTTLTTASSMLVKADE 72
Query: 463 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQE 639 L + E L AR ++ ++E + +++++ EK +AEA L VQK+E Sbjct: 73 LAAKYEEDLSEARRNAQLKIASSQKEAQNIVSEDIKKAQLNAEKLIAEASKQLNVQKEE 131
>sp|Q05367|ATPX_SYNP1 ATP synthase B' chain OS=Synechococcus sp. (strain PCC 6716) GN=atpG PE=3 SV=1 Length = 159
Score = 73.9 bits (180), Expect = 6e-13 Identities = 37/115 (32%), Positives = 67/115 (58%) Frame = +1
Query: 292 IFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQE 471 +FDF+ TLP++A +FL+L V L+ + +KP+ + +D+RDE IR L ++ + +L Sbjct: 22 MFDFDATLPLMAVQFLILTVILNALLYKPLGQALDNRDEYIRTNLQQAKERLQQATELAN 81
Query: 472 QAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQ 636 Q E L R E A + + + E A++ +++ ++ EL +A A ++ QKQ Sbjct: 82 QYEQELAYTRREAQAIIEEARAEAQKIATAEIAAAQQALQAELMKAQAEIDQQKQ 136
>sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Guillardia theta GN=atpG PE=3 SV=1 Length = 163
Score = 73.6 bits (179), Expect = 8e-13 Identities = 39/119 (32%), Positives = 71/119 (59%) Frame = +1
Query: 283 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 462 +G +FDFN TLP++A + LL MV L+ +++ PVAKV+D+R+E IR+ L D + + Sbjct: 18 EGGLFDFNATLPLMAVQILLFMVILNAVFYNPVAKVLDEREEYIRKNLTQASDILAKAEA 77
Query: 463 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQE 639 + +Q E L R E ++ ++E + +++++++ E + EA + L QKQ+ Sbjct: 78 ITKQYEKDLAQERREAQLIISVAQKEAQDIVALEIKQAQKDTELLVNEATSQLNSQKQK 136
>sp|P48085|ATPX_CYAPA ATP synthase B' chain, cyanelle OS=Cyanophora paradoxa GN=atpG PE=3 SV=1 Length = 164
Score = 73.2 bits (178), Expect = 1e-12 Identities = 37/119 (31%), Positives = 67/119 (56%) Frame = +1
Query: 283 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 462 +G +FDF+ TLP++ + L+LM+ L+ +++KP+ K++D+R E I+ + + Sbjct: 18 EGGLFDFDATLPVMMVQLLVLMLILNAVFYKPLIKILDERKEYIQSNFNEAEKCLAQAAE 77
Query: 463 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQE 639 L Q E + AR + N + E + KL+E++++ + ELA A LE+QK E Sbjct: 78 LTTQYETKITDARQNASKLTNTTRSEIQRFVSEKLEEAQKKADSELASATNKLELQKDE 136
>sp|P12410|ATPX_ANASP ATP synthase B' chain OS=Anabaena sp. (strain PCC 7120) GN=atpG PE=3 SV=1 Length = 163
Score = 68.9 bits (167), Expect = 2e-11 Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 11/127 (8%) Frame = +1
Query: 283 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 462 +G +FD + TLP++A +FLLL + L+ +KP+ K +D R+E +R + ++ + +K Sbjct: 16 EGGLFDLDATLPLMAIQFLLLALILNATLYKPLGKAIDGRNEYVRNNQLEAQERLSKAEK 75
Query: 463 LQEQAEAILKAAR-------AETTAELNKMKRETAAKLDAKLQESRER----IEKELAEA 609 L E E L AR A+ AE K+ E A + Q RE+ IE++ +A Sbjct: 76 LAEAYEQELAGARRQAQTIIADAQAEAQKIAAEKVAAAQKEAQAQREQAAGEIEQQKQQA 135
Query: 610 IANLEVQ 630 +A+LE Q Sbjct: 136 LASLEQQ 142
>sp|Q02852|ATPX_ANTSP ATP synthase B' chain, chloroplastic OS=Antithamnion sp. GN=atpG PE=3 SV=1 Length = 159
Score = 67.8 bits (164), Expect = 5e-11 Identities = 32/119 (26%), Positives = 69/119 (57%) Frame = +1
Query: 283 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 462 +G +FDFN TLP++A +FL L + L+ I++KP+ K++D+RDE I L + + Sbjct: 18 QGGLFDFNATLPLMALQFLALTIILNLIYYKPLGKILDERDEYIANSLTAASAALSKAND 77
Query: 463 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQE 639 L ++ E L +R + + +++ + +K++E+++ ++ ++ L +QK++ Sbjct: 78 LTKRYEQDLAESRKKAQDIIKNAQQDAQNIVSSKIKEAQKDADQLMSNTYDQLNIQKEQ 136
>sp|Q9TM29|ATPX_CYACA ATP synthase B' chain, chloroplastic OS=Cyanidium caldarium GN=atpG PE=3 SV=1 Length = 157
Score = 66.6 bits (161), Expect = 1e-10 Identities = 33/118 (27%), Positives = 73/118 (61%) Frame = +1
Query: 286 GKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKL 465 G +FDF+ TLP++A++FLL+M+ LD ++KP+ KV+ DR+ I + L S S++ K+ Sbjct: 15 GGLFDFDATLPLMASQFLLIMLILDITFYKPINKVLKDRENYILKTLESATQISEKTKET 74
Query: 466 QEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQE 639 + E ++ ++ E+ ++ +K +T + +L +++ + ++++I L +K++ Sbjct: 75 LARYEEVILKSKKESQQLIDSIKTKTEHDIVNELIQTQNSTREFISKSIKELYRKKEQ 132
>sp|P08446|ATPX_SYNP6 ATP synthase B' chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=atpG PE=3 SV=1 Length = 158
Score = 65.5 bits (158), Expect = 2e-10 Identities = 34/117 (29%), Positives = 64/117 (54%) Frame = +1
Query: 283 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 462 +G +FD + TLP++A + L+L+ L+ +++KP KV+DDRD+ +R + E+K Sbjct: 16 EGGLFDLDATLPLMAVQILVLVFLLNAVFYKPFGKVLDDRDQFVRGGRQDAKARLAEVKA 75
Query: 463 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQK 633 L Q E L A R ++ A + + + E +L E++ + + +A ++ QK Sbjct: 76 LTAQYEQELAATRKQSQALIAEAQTEAGRIAAQQLAEAQREAQAQREQAQQEIDQQK 132
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RKV9 |
Definition |
tr|A9RKV9|A9RKV9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
147 |
Score (bit) |
185.0 |
E-value |
2.0e-45 |
Report |
|