NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950485
Clone id TST38A01NGRL0008_M12
Library
Length 631
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_M12. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
AATTATTGCAGAAAATGAAGCTCCAGAACCACAGCCAGTTTCTGAAAGTCCACGGGAAGC
AGGTGAAGAACAGATCAGTGTAGAGGACTATGTAGAACACATGAAAGTTGAAGGAGCATC
GGTCAGAGGGGAAGTTTATTCAAATGAGGTCCTTATGCCTGAGGTGTTGAGTAGGACAGA
CCAGGTTTTTTTGGTAGAAGATAAACCGGCAGCTTCTCCTGAAAGGGAGGATTTGTCGTT
CGTGAATGGTCACTTTGTTACATCCCCTGCTCAAACCACTGATGCCTTGACTTTGGATAG
TCCAGAAGATGTGTCGTTATCCATTGTTAAGAAAGATGCTGCTGCAAAGTCGGCAGAATC
ATCAACTGACAGTGCATCAAGAGATTTTATCGAAGTAAAAAGCTCTTTCTTTCTTGACAG
TAGCCATATTGTGGCGTCCTCAGAGAATAATGTTGTCCCAGCCTCAAACAATGGGAGTGG
TGGATGTTCCCCTGTTTGTGAGCAGGAGATATTCTCAAGCTCAAATAAGTCTCTTGAATT
GGGAAGTACAGAACATATTGATACCACCTCAGAAACTTTGGAGGCCAATAATACCAATGA
GCTCCATGGAGACGAGCCCTCAGCTCTGTTC
■■Homology search results ■■ -
sp_hit_id Q5BJK8
Definition sp|Q5BJK8|GOLI4_RAT Golgi integral membrane protein 4 OS=Rattus norvegicus
Align length 69
Score (bit) 33.1
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950485|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_M12, 5'
         (631 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5BJK8|GOLI4_RAT Golgi integral membrane protein 4 OS=Rattus ...    33   1.2  
sp|P54674|PI3K2_DICDI Phosphatidylinositol 3-kinase 2 OS=Dictyos...    33   1.6  
sp|Q3L8U1|CHD9_HUMAN Chromodomain-helicase-DNA-binding protein 9...    33   1.6  
sp|P39353|YJHC_ECOLI Uncharacterized oxidoreductase yjhC OS=Esch...    32   2.7  
sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thalian...    32   2.7  
sp|Q9SY20|FB20_ARATH F-box protein At1g30790 OS=Arabidopsis thal...    31   6.1  
sp|A6H8Y1|BDP1_HUMAN Transcription factor TFIIIB component B'' h...    31   6.1  
sp|Q54E43|Y4080_DICDI Putative uncharacterized protein DDB_G0291...    30   7.9  
sp|Q9QXM1|JMY_MOUSE Junction-mediating and -regulatory protein O...    30   7.9  
sp|P27033|GUNC_PSEFL Endoglucanase C OS=Pseudomonas fluorescens ...    30   7.9  
sp|Q03131|ERYA1_SACER Erythronolide synthase, modules 1 and 2 OS...    30   7.9  

>sp|Q5BJK8|GOLI4_RAT Golgi integral membrane protein 4 OS=Rattus
           norvegicus GN=Golim4 PE=1 SV=2
          Length = 653

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = +2

Query: 26  EPQPVSESPREAGEEQISVEDYVEHMKVEGASVRGEVYSNEVLMPEVLSRTDQVFLVEDK 205
           E +P+S   +EAG + +  ++ VE  + EG  V  E    + L  E + +  Q   +E++
Sbjct: 267 EEKPLSSMQKEAGFQALEEQNQVEPREPEGRQVEEE--HRKALEEEEMEQVGQAEHLEEE 324

Query: 206 PAASPERED 232
              SPE +D
Sbjct: 325 HDPSPEEQD 333


>sp|P54674|PI3K2_DICDI Phosphatidylinositol 3-kinase 2
           OS=Dictyostelium discoideum GN=pikB PE=2 SV=2
          Length = 1857

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +2

Query: 410 FLDSSHIVASSENNVVPASNNGSGGCSPVCEQEIFSSSNKSLELGSTEHIDTTSETLEAN 589
           ++ +  I+ S+ N  +  S +GS G  P+C   + SSS+ S    +T    TTS     N
Sbjct: 132 YMTALEILDSTINTPLNRSRSGSIGSKPIC-NNLTSSSSSSSTTATTPSPTTTSNNNNNN 190

Query: 590 NTN 598
           N N
Sbjct: 191 NNN 193


>sp|Q3L8U1|CHD9_HUMAN Chromodomain-helicase-DNA-binding protein 9
           OS=Homo sapiens GN=CHD9 PE=1 SV=2
          Length = 2897

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +2

Query: 395 VKSSFFLDSSHIVASSENNVVPASNNGSGGCSPVCEQEIFSSSNKSLELGSTEHIDTTSE 574
           +  +  L SS ++AS+  N   +   GS   SP          ++ ++  ST+HI   + 
Sbjct: 281 ISPNSLLQSSAVLASNHTNQTLSDFTGSNSFSP----------HRGIKQESTQHILNPNT 330

Query: 575 TLEANNTNELHGDEP 619
           +L +NN   LH   P
Sbjct: 331 SLNSNNFQILHSSHP 345


>sp|P39353|YJHC_ECOLI Uncharacterized oxidoreductase yjhC
           OS=Escherichia coli (strain K12) GN=yjhC PE=3 SV=2
          Length = 372

 Score = 32.0 bits (71), Expect = 2.7
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +2

Query: 104 KVEGASVRGEVYSNEVLMPEVLSRTDQVFLVEDKPAASPEREDLSFVNGHFVTSPAQTTD 283
           +++GA   G       L    L R + +FL      A PE + +  +NG    S   T D
Sbjct: 289 EMDGAIAYGHPGKKTPLWLASLIRKETLFLHNILCGAKPEEDYIDLLNGEAAMSAIATAD 348

Query: 284 ALTLDSPEDVSLSI 325
           A TL   +D  + I
Sbjct: 349 AATLSRSQDRKVKI 362


>sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana
            GN=DCL4 PE=1 SV=1
          Length = 1589

 Score = 32.0 bits (71), Expect = 2.7
 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +2

Query: 50   PREAGEEQISVEDYVEHMKVEGASVRGEVYSNEVLMPEVLSRTDQVFL-VEDKPAASPER 226
            P+E  E  I +   + H+K++G S   ++ S+  L+P ++ R + + + +E K   S   
Sbjct: 981  PQELDEYFIEIPPELSHLKIKGLS--KDIGSSLSLLPSIMHRMENLLVAIELKHVLSASI 1038

Query: 227  EDLSFVNGHFVTSPAQT 277
             +++ V+GH V     T
Sbjct: 1039 PEIAEVSGHRVLEALTT 1055


>sp|Q9SY20|FB20_ARATH F-box protein At1g30790 OS=Arabidopsis
           thaliana GN=At1g30790 PE=2 SV=2
          Length = 399

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +2

Query: 395 VKSSFFLDSSHIVASSENNVVPASNNGSGGCSPVCEQEIFSSSNKSLELGST--EHIDTT 568
           + +  F+DS + ++S+    + A +NGS          IFSSS++  E  S+   ++DTT
Sbjct: 40  IHNQSFIDSFYSISSTRPRFIVAFSNGSFPSDKEKRLFIFSSSHEGHESSSSVITNLDTT 99

Query: 569 SETLEANN 592
             +L  +N
Sbjct: 100 IPSLTVSN 107


>sp|A6H8Y1|BDP1_HUMAN Transcription factor TFIIIB component B''
            homolog OS=Homo sapiens GN=BDP1 PE=1 SV=2
          Length = 2624

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +2

Query: 47   SPREAGEEQISVEDYVEHMKVEGASVRGEVYSNEVLMPEVLSRTDQVFLVEDKPAASPER 226
            SPRE G E++   D +E       +  G   S     PEV+  T+++ L E +   SP+ 
Sbjct: 993  SPRENGPEEVKPVDEME----TDLNATGRESSPREKTPEVIDATEEIDLEETEREVSPQE 1048

Query: 227  EDLSFV 244
              L  V
Sbjct: 1049 NGLEEV 1054


>sp|Q54E43|Y4080_DICDI Putative uncharacterized protein DDB_G0291812
           OS=Dictyostelium discoideum GN=DDB_G0291812 PE=4 SV=1
          Length = 1187

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +2

Query: 422 SHIVASSENNVVPASNNGSGGCSPVCEQEIFSSSNKSLELGSTEHIDTTSETLEANNTN 598
           S I+  +  N+    NN SG  S   E  I SSSN+++   +   ID  S T    N+N
Sbjct: 343 STIIEKNNINIQINKNNNSGEFSTNSETNI-SSSNENINSNNNTKIDNNSNTSNGFNSN 400


>sp|Q9QXM1|JMY_MOUSE Junction-mediating and -regulatory protein
           OS=Mus musculus GN=Jmy PE=1 SV=1
          Length = 983

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 2   IIAENEAPEPQPVSESPREAGEEQISVED 88
           ++ E+EAP+P P SE P  A E + S E+
Sbjct: 189 MVREDEAPQPLPDSEQPPSAAELESSAEE 217


>sp|P27033|GUNC_PSEFL Endoglucanase C OS=Pseudomonas fluorescens
           GN=celC PE=1 SV=1
          Length = 748

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +2

Query: 413 LDSSHIVASSENNVVPASNNG-----SGGCSPVCEQEIFSSSNKSLELGST 550
           + SS + +SS ++VVP S++      S  CS V    + SSS+ S+ +  T
Sbjct: 234 ISSSSVRSSSSSSVVPPSSSSSSSVPSSSCSSVSSSSVVSSSSSSVSVPGT 284
tr_hit_id A5K5D5
Definition tr|A5K5D5|A5K5D5_PLAVI Tryptophan-rich antigen (Pv-fam-a) OS=Plasmodium vivax
Align length 98
Score (bit) 35.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950485|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_M12, 5'
         (631 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5K5D5|A5K5D5_PLAVI Tryptophan-rich antigen (Pv-fam-a) OS=Pla...    36   2.2  
tr|B0CAA6|B0CAA6_ACAM1 Serine/threonine kinase with TPR repeats ...    35   2.9  
tr|Q7RI77|Q7RI77_PLAYO Bromodomain, putative OS=Plasmodium yoeli...    35   2.9  
tr|A5CVG8|A5CVG8_VESOH Acetyl-CoA carboxylase biotin carboxyl ca...    35   4.9  
tr|Q9VB94|Q9VB94_DROME CG6296 OS=Drosophila melanogaster GN=CG62...    35   4.9  
tr|B4IC19|B4IC19_DROSE GM10150 OS=Drosophila sechellia GN=GM1015...    35   4.9  
tr|A4CBU9|A4CBU9_9GAMM Putative uncharacterized protein OS=Pseud...    34   8.2  
tr|Q2N856|Q2N856_ERYLH Response regulator OS=Erythrobacter litor...    34   8.3  
tr|A6GIJ7|A6GIJ7_9DELT Putative uncharacterized protein OS=Plesi...    34   8.3  
tr|Q4UID4|Q4UID4_THEAN Putative uncharacterized protein OS=Theil...    34   8.3  
tr|A7E3H9|A7E3H9_BOMMO Odorant receptor 38 OS=Bombyx mori GN=Or3...    34   8.3  
tr|Q4P3I7|Q4P3I7_USTMA Putative uncharacterized protein OS=Ustil...    34   8.3  

>tr|A5K5D5|A5K5D5_PLAVI Tryptophan-rich antigen (Pv-fam-a)
            OS=Plasmodium vivax GN=PVX_092990 PE=4 SV=1
          Length = 1414

 Score = 35.8 bits (81), Expect = 2.2
 Identities = 30/98 (30%), Positives = 40/98 (40%)
 Frame = +2

Query: 11   ENEAPEPQPVSESPREAGEEQISVEDYVEHMKVEGASVRGEVYSNEVLMPEVLSRTDQVF 190
            E E  E + V E     GE   + E+  E   VEG  V GE    EV   EV+   +   
Sbjct: 837  EEEVQEEEVVEEGVEVEGEP--AEEEVQEEEVVEGVEVEGEPAEEEVQEEEVVEEVEAEE 894

Query: 191  LVEDKPAASPEREDLSFVNGHFVTSPAQTTDALTLDSP 304
             VE+KP    E + +       +  PA T   LT+  P
Sbjct: 895  PVEEKPKVE-ELKPVETPKEAKLAVPADTKTELTVAGP 931


>tr|B0CAA6|B0CAA6_ACAM1 Serine/threonine kinase with TPR repeats
           OS=Acaryochloris marina (strain MBIC 11017) GN=AM1_2841
           PE=4 SV=1
          Length = 810

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
 Frame = +2

Query: 56  EAGEEQISVEDYVEHMKV-----EGASVRGEVYSNEVLMPEVLSRTDQVFLVEDKPAAS- 217
           ++G  Q + E++ + +++     E A   GE Y+     PE +++ D +   + K AA+ 
Sbjct: 353 QSGNWQSATENFEQALELKADYTEAALKLGETYAEIGKYPEAIAQFDTLLKQQPKTAAAF 412

Query: 218 PEREDLSFVNGHFVTSPAQTTDALTLDSPED 310
            ER ++ F  G +  + +   +ALTLD P+D
Sbjct: 413 RERGEIRFATGGYQAAISDYNEALTLD-PKD 442


>tr|Q7RI77|Q7RI77_PLAYO Bromodomain, putative OS=Plasmodium yoelii
            yoelii GN=PY03752 PE=4 SV=1
          Length = 3182

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +2

Query: 413  LDSSHIVASSENNVVPASNNGSGGCSPVCEQEIFSSSNKSLELGSTEHIDTT-----SET 577
            ++SSHI  +  NN++   NN    C    +    +  NK++ + +  HI+ +     S+ 
Sbjct: 807  INSSHIFINKNNNIIHNENNLRNPCDIDNDSNFVNKLNKNVVIDTNRHINNSNIIKDSQN 866

Query: 578  LEANNTNEL 604
            ++ NN N +
Sbjct: 867  IDHNNANNI 875


>tr|A5CVG8|A5CVG8_VESOH Acetyl-CoA carboxylase biotin carboxyl
           carrier protein OS=Vesicomyosocius okutanii subsp.
           Calyptogena okutanii (strain HA) GN=accB PE=4 SV=1
          Length = 148

 Score = 34.7 bits (78), Expect = 4.9
 Identities = 23/67 (34%), Positives = 36/67 (53%)
 Frame = +2

Query: 68  EQISVEDYVEHMKVEGASVRGEVYSNEVLMPEVLSRTDQVFLVEDKPAASPEREDLSFVN 247
           EQ S+ + +E ++ EG S+R   Y N  + P V   T  V  +E     +P   ++S V+
Sbjct: 14  EQSSMSE-IEIVEGEG-SLRISRYRNATMAPPVAITTPVVAPIEVTTGVNPSENNISTVD 71

Query: 248 GHFVTSP 268
           GH +TSP
Sbjct: 72  GHPITSP 78


>tr|Q9VB94|Q9VB94_DROME CG6296 OS=Drosophila melanogaster GN=CG6296
           PE=2 SV=1
          Length = 676

 Score = 34.7 bits (78), Expect = 4.9
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
 Frame = +2

Query: 2   IIAENEAPEPQPVSESPREAGEEQISVEDYVEHMKVEGASVRG-EVYSNEVLMPEVLSRT 178
           I +  EAPE +  + SP + GE+  + E      K E  S    +   +    PE +S T
Sbjct: 422 IDSTTEAPEDESTTSSPTDGGEQSTTEEPETTTEKPEETSTSPIDTEDSTTKEPEDVSTT 481

Query: 179 DQVFLVEDKPAASPEREDLSFVNGH---FVTSPAQTTDALTLDSPEDVSLS 322
            +    E+   +SPE +D +   G       +P    +  T + PE+ + S
Sbjct: 482 PKE--SEESTTSSPEDDDTTSAPGEDDDTTAAPGGDEEETTTEDPEETTTS 530


>tr|B4IC19|B4IC19_DROSE GM10150 OS=Drosophila sechellia GN=GM10150
           PE=4 SV=1
          Length = 769

 Score = 34.7 bits (78), Expect = 4.9
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 9/109 (8%)
 Frame = +2

Query: 17  EAPEPQPVSESPREAGEEQISVEDYVEHMKVEGASVR-GEVYSNEVLMPEVLSRTDQVFL 193
           EAPE +  + +PR+ GEE  + E      + E  S        +    PE +S T +   
Sbjct: 252 EAPEDENTTATPRDGGEESTTEEPETTTEEPEETSTSPSGTEDSTTEEPEEVSTTPKE-- 309

Query: 194 VEDKPAASPEREDLSFVNGHFV--------TSPAQTTDALTLDSPEDVS 316
            ED    SPE +D +               TSP+ T D+ T +  ED +
Sbjct: 310 SEDSTTTSPEEDDTTRDEEETTTEDPEETSTSPSDTEDSTTEEPEEDTT 358


>tr|A4CBU9|A4CBU9_9GAMM Putative uncharacterized protein
           OS=Pseudoalteromonas tunicata D2 GN=PTD2_18480 PE=4 SV=1
          Length = 686

 Score = 33.9 bits (76), Expect = 8.2
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -3

Query: 620 RARLHGAHWYYWPPKFLR---WYQYVLYFPIQETYLSLRISPAHKQGNIHHSHCLRL 459
           R  LH AH+  W  +F+R    Y   LYF + ET L   I+ A    N+  +H ++L
Sbjct: 513 RQSLHSAHFSTWLSQFMRDAKPYMTELYFEVNETALLDNINGATNNINLFKTHGIKL 569


>tr|Q2N856|Q2N856_ERYLH Response regulator OS=Erythrobacter
           litoralis (strain HTCC2594) GN=ELI_10215 PE=4 SV=1
          Length = 266

 Score = 33.9 bits (76), Expect = 8.3
 Identities = 24/70 (34%), Positives = 32/70 (45%)
 Frame = +2

Query: 68  EQISVEDYVEHMKVEGASVRGEVYSNEVLMPEVLSRTDQVFLVEDKPAASPEREDLSFVN 247
           E  SVED  E M +  A V G V   E +       +  V ++ED+P  S + EDL    
Sbjct: 108 EDFSVEDAAEIMGLAPADVEGLV--REAVAEIDRESSTNVLIIEDEPLISMQLEDLVRSL 165

Query: 248 GHFVTSPAQT 277
           GH +   A T
Sbjct: 166 GHDIAGTAAT 175


>tr|A6GIJ7|A6GIJ7_9DELT Putative uncharacterized protein
           OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_32285 PE=4 SV=1
          Length = 319

 Score = 33.9 bits (76), Expect = 8.3
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +2

Query: 5   IAENEAPEPQPVSESPREAGEEQISVEDYVEHMKVE 112
           + E E PEP P    P  AG EQ+SVE+ +E MK E
Sbjct: 67  LVEVEIPEPPP----PPFAGREQVSVEELLEAMKAE 98


>tr|Q4UID4|Q4UID4_THEAN Putative uncharacterized protein
           OS=Theileria annulata GN=TA06520 PE=4 SV=1
          Length = 541

 Score = 33.9 bits (76), Expect = 8.3
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = +2

Query: 17  EAPEPQPVSESPREAGEEQISVEDYVEHMKVEGASVRGEVYSNEVLMPEVLSRTDQ 184
           + P PQPV E P E  + + S+ED+   + +   S   + Y++ + +PEV   TD+
Sbjct: 406 DQPIPQPVPEPPLEVKKPRTSMEDFEHEISLINKS---DDYNSTISLPEVKIITDE 458