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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950488
Clone id TST38A01NGRL0008_M15
Library
Length 654
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_M15. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
TTCCTCAATCTGTTGACAAAACAAGACAAGTGACCGCCTTCGCCCACAGGTGCGATCTCT
CGTGTACCAACCCCTGCTCCGCCGCTCCCACCTCTTCATTACCCTCAGCGCCTCACGAAT
CCCTCTCTTCCTACCTCCATTGATCGATGCAGTCAGATCAAACCGTTAGCTTAAGGCCCT
GTGGCGGTAAGGGGCGCCTTTTTGGCCCCCGCAGCAGCAGCAGCACTTCAGGGAGCAGCT
TGATCACATCCACTAACAGCTTCCCTGATCCTCTGTTCCCAACTCGCCTGAACGATGGCC
TGGGTTCAGATTCAAGATCTCAGAAGCCATCGTCTGAGCGAATCAGGTACAGTCGTGAGG
AGCTGTATTAGTATAAAGAGGCTCTTAAGGAAATTCCGCCGGACATAAAAACTGGTATTA
GTGAGATTGAGGCCGAGCTCTCTATAGCTGAGGAGCCGGAGTGGGCTCGACCAGCTACAA
ATGCACAAGCTCCGCCTAGTGCGCCACGCTACACGGAGACAGATAATCGTGATTGGAAGA
GTAGAGCACCGTTACCTTACCCCACTCCTGACGATNAAGGGAGGGATGTCCCAAAGGACT
CAGGAAAAAGGTCTGACAGTGACTGGCGCGAGAAAGATCTGGAACATGAAGCTT
■■Homology search results ■■ -
sp_hit_id Q03387
Definition sp|Q03387|IF41_WHEAT Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum
Align length 162
Score (bit) 34.7
E-value 0.45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950488|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_M15, 5'
         (654 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03387|IF41_WHEAT Eukaryotic initiation factor iso-4F subunit...    35   0.45 
sp|Q91622|CDX1_XENLA Homeobox protein CDX-1 OS=Xenopus laevis GN...    34   0.77 
sp|Q53684|YOE2_STRAT Uncharacterized lipoprotein in oleD 5'regio...    32   3.8  
sp|Q924A2|CIC_MOUSE Protein capicua homolog OS=Mus musculus GN=C...    31   5.0  
sp|Q7Z572|SPT21_HUMAN Spermatogenesis-associated protein 21 OS=H...    31   6.5  

>sp|Q03387|IF41_WHEAT Eukaryotic initiation factor iso-4F subunit
           p82-34 OS=Triticum aestivum PE=1 SV=2
          Length = 788

 Score = 34.7 bits (78), Expect = 0.45
 Identities = 48/162 (29%), Positives = 59/162 (36%), Gaps = 21/162 (12%)
 Frame = +3

Query: 147 MQSDQTV-SLRPCGGKG-----RLFGPRXXXXXXXXXXXXXXXXFPDPLFP--------T 284
           M +DQ V SLRP GG G     RLF P                   D L P        +
Sbjct: 1   MTTDQPVISLRPGGGGGGPRGGRLFAPAFAVAASGSG---------DFLRPHGGGASGVS 51

Query: 285 RLNDGLGSDSRSQKPSSERIRYSRXXXXXXXXXXXXIPPDIKTGXXXXXXXXXXXXXXXW 464
           R+ D L S+SR      ER+RYSR                ++                 W
Sbjct: 52  RIGD-LHSESR------ERVRYSRDQLLDLRKITDVTEQILRL--QQEIEAELNGDDQSW 102

Query: 465 ARPATNAQAPPSAP-------RYTETDNRDWKSRAPLPYPTP 569
            R  +N Q    A        R+TETDNRDW++R   P P P
Sbjct: 103 VRNDSNVQLQTQAQPQVQAQNRFTETDNRDWRARTEKP-PAP 143


>sp|Q91622|CDX1_XENLA Homeobox protein CDX-1 OS=Xenopus laevis
           GN=cdx1 PE=2 SV=1
          Length = 263

 Score = 33.9 bits (76), Expect = 0.77
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 471 PATNAQAPPSAPRYTETDNRDWKSRAPLPYPTPDDXGRDVPKDSGKRSDSDWREKDLEHE 650
           P+ N+  PP +P     D  +W  R  +P  T    G+   KD  +   +D +  +LE E
Sbjct: 109 PSINSSVPPLSPSAQRADPYEWMRRTGVPTTTTTTNGKTRTKDKYRVVYTDHQRLELEKE 168


>sp|Q53684|YOE2_STRAT Uncharacterized lipoprotein in oleD 5'region
           OS=Streptomyces antibioticus PE=4 SV=1
          Length = 451

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 462 WARPATNAQAPPSAPRYTETDNRDWKSRAP 551
           W  PAT+A  PP  PR  + + RD  SR P
Sbjct: 419 WCWPATSADPPPGVPRAGKRNIRDATSRLP 448


>sp|Q924A2|CIC_MOUSE Protein capicua homolog OS=Mus musculus GN=Cic
            PE=1 SV=2
          Length = 2510

 Score = 31.2 bits (69), Expect = 5.0
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 492  PPSAPRYTETDNRDWKSRAPLPYPTPDDXGRDVPKDSGK--RSDSDWREKDLEHEA 653
            PP+ P  TET     +S  P P P  +  G   P+ + K   S SDWR   L  E+
Sbjct: 2131 PPAPPPPTETWPPTARSSPPPPLPAEERPGTKGPETASKFPSSSSDWRVPGLGLES 2186


>sp|Q7Z572|SPT21_HUMAN Spermatogenesis-associated protein 21 OS=Homo
           sapiens GN=SPATA21 PE=2 SV=3
          Length = 469

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
 Frame = +3

Query: 477 TNAQAPPSAPRYTETDNRDWKSRAPLPYPTPDDXGRDVPKDS------GKRSDSDWREKD 638
           T+A + P  P         W +R P P P P   G  VP         G   D  WR  +
Sbjct: 122 TSAPSLPQTPASVPASGPSW-ARLPAPGPEPAPMGAPVPTSMPCPVLLGPALDLGWRRME 180

Query: 639 LEHEA 653
           L H++
Sbjct: 181 LLHQS 185
tr_hit_id A9SCB0
Definition tr|A9SCB0|A9SCB0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 175
Score (bit) 46.6
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950488|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_M15, 5'
         (654 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SCB0|A9SCB0_PHYPA Predicted protein OS=Physcomitrella paten...    47   0.001
tr|A9SCA2|A9SCA2_PHYPA Predicted protein (Fragment) OS=Physcomit...    45   0.004
tr|A9SCA4|A9SCA4_PHYPA Predicted protein (Fragment) OS=Physcomit...    43   0.019
tr|Q93ZT6|Q93ZT6_ARATH Putative eukaryotic initiation factor eIF...    39   0.21 
tr|Q8H179|Q8H179_ARATH Eukaryotic initiation factor 4, eIF4-like...    39   0.21 
tr|A9RXH5|A9RXH5_PHYPA Predicted protein (Fragment) OS=Physcomit...    39   0.21 
tr|A9RXH0|A9RXH0_PHYPA Predicted protein (Fragment) OS=Physcomit...    39   0.21 
tr|Q8H0T8|Q8H0T8_ARATH Eukaryotic initiation factor 4, eIF4-like...    39   0.36 
tr|Q9FJM7|Q9FJM7_ARATH Eukaryotic initiation factor 4, eIF4-like...    38   0.62 
tr|Q8W4L4|Q8W4L4_ARATH Putative eukaryotic initiation factor 4, ...    37   0.81 
tr|O82233|O82233_ARATH Putative eukaryotic initiation factor 4, ...    37   0.81 
tr|Q84PB3|Q84PB3_ORYSJ Eukaryotic initiation factor-like protein...    37   1.4  
tr|Q7XT80|Q7XT80_ORYSA OSJNBa0029H02.9 protein OS=Oryza sativa G...    37   1.4  
tr|Q6K641|Q6K641_ORYSJ Os02g0611500 protein OS=Oryza sativa subs...    37   1.4  
tr|Q1MSJ4|Q1MSJ4_ORYSI Putative eukaryotic translation initiatio...    37   1.4  
tr|Q1MSJ3|Q1MSJ3_ORYSI Putative eukaryotic translation initiatio...    37   1.4  
tr|Q1MSJ2|Q1MSJ2_ORYGL Putative eukaryotic translation initiatio...    37   1.4  
tr|Q1MSJ1|Q1MSJ1_ORYGL Putative eukaryotic translation initiatio...    37   1.4  
tr|Q1MSJ0|Q1MSJ0_ORYGL Putative eukaryotic translation initiatio...    37   1.4  
tr|Q0JC04|Q0JC04_ORYSJ Os04g0499300 protein (Fragment) OS=Oryza ...    37   1.4  
tr|A3AV99|A3AV99_ORYSJ Putative uncharacterized protein OS=Oryza...    37   1.4  
tr|A2X746|A2X746_ORYSI Putative uncharacterized protein OS=Oryza...    37   1.4  
tr|B8ARA0|B8ARA0_ORYSI Putative uncharacterized protein OS=Oryza...    35   5.2  
tr|A7P658|A7P658_VITVI Chromosome chr4 scaffold_6, whole genome ...    35   5.2  
tr|A4RLD8|A4RLD8_MAGGR Putative uncharacterized protein OS=Magna...    35   5.2  
tr|A5BS88|A5BS88_VITVI Putative uncharacterized protein OS=Vitis...    34   6.8  
tr|A3R6V2|A3R6V2_PLAFA Erythrocyte membrane protein 1 OS=Plasmod...    34   6.8  

>tr|A9SCB0|A9SCB0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_183347 PE=4 SV=1
          Length = 815

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 47/175 (26%), Positives = 60/175 (34%), Gaps = 10/175 (5%)
 Frame = +3

Query: 144 SMQSDQTVSLRPCGGKGRLFGPRXXXXXXXXXXXXXXXXFPDPLFPTRLNDGLGSDSRSQ 323
           S  +  +VSLRP GGK   F P                  P  L P           R  
Sbjct: 10  SQPAPTSVSLRPGGGKSLSFRPHSAPFQNGSRGAFSDD--PAALNPNVATTKFVLRERPV 67

Query: 324 KPSSERIRYSRXXXXXXXXXXXXIPPDIKTGXXXXXXXXXXXXXXXWARPATNAQAPPSA 503
           +   ERIRYSR             P  +                    R   +   PP A
Sbjct: 68  RSYHERIRYSRDRLLEFRDACTQAPEQLVNSGISSLTASPEVEDDWTRREPRDLPQPPVA 127

Query: 504 PRYTETDNRDWKSRAPLPYPTPDDXGRDV---------PKDSGKRSD-SDWREKD 638
            R  E+D+RDWK+RAPLP   P    R           PK    R+D SD+ +++
Sbjct: 128 -RVAESDDRDWKARAPLPPSAPVQEERSSSREQQRDRNPKHRNDRNDRSDFNDRN 181


>tr|A9SCA2|A9SCA2_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_11406 PE=4 SV=1
          Length = 721

 Score = 45.1 bits (105), Expect = 0.004
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = +3

Query: 462 WARPATNAQAPPSAPRYTETDNRDWKSRAPLPYPTP----DDXGRDVPKDSGKRSDSDWR 629
           W+R        P  PR  E D RDWK+RAPLP P P        R++ +D   +  +D  
Sbjct: 43  WSRREPRDSPLPPTPRAAEPDTRDWKARAPLPAPAPVQEDRSSSRELQRDRSYKQRNDRN 102

Query: 630 EK 635
           E+
Sbjct: 103 ER 104


>tr|A9SCA4|A9SCA4_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_41129 PE=4 SV=1
          Length = 700

 Score = 42.7 bits (99), Expect = 0.019
 Identities = 26/88 (29%), Positives = 32/88 (36%)
 Frame = +3

Query: 336 ERIRYSRXXXXXXXXXXXXIPPDIKTGXXXXXXXXXXXXXXXWARPATNAQAPPSAPRYT 515
           ERIRY+R             P ++                  W R  +     P  PR  
Sbjct: 1   ERIRYTRDRLLQFKDAYAEAPEEL-VNSGIDGLINGAGPDDDWTRRQSRDLPQPPTPRAA 59

Query: 516 ETDNRDWKSRAPLPYPTPDDXGRDVPKD 599
           E DNRDWK+RAP P        R  P+D
Sbjct: 60  EPDNRDWKARAPPPTSASVQEDRSSPRD 87


>tr|Q93ZT6|Q93ZT6_ARATH Putative eukaryotic initiation factor eIF4
           (Putative eukaryotic initiation factor 4) OS=Arabidopsis
           thaliana GN=At5g57870 PE=2 SV=1
          Length = 780

 Score = 39.3 bits (90), Expect = 0.21
 Identities = 49/179 (27%), Positives = 67/179 (37%), Gaps = 16/179 (8%)
 Frame = +3

Query: 150 QSDQTV-SLRPCGGKG-RLFGPRXXXXXXXXXXXXXXXX--------FPDPLFPTRLNDG 299
           Q DQTV SLRP GG+G RLFG                           P   FP +    
Sbjct: 3   QGDQTVLSLRPGGGRGNRLFGSSSSSSSLSFGSLSSSDLPLLRPHGGAPASSFPFK---- 58

Query: 300 LGSDSRSQKPSSERIRYSRXXXXXXXXXXXXIPPDIKTGXXXXXXXXXXXXXXXWARP-- 473
            G DSR      ER++Y+R                ++                 WAR   
Sbjct: 59  -GGDSRFD--GRERVKYTREQLLELKETTQLSDEILRV--QRETAAELFGEEGTWARGES 113

Query: 474 -ATNAQAPPSAPRYTETDNRDWKSRAPLPYPTPDDXGRD---VPKDSGKRSDSDWREKD 638
             +N     SA R++E D+RDW+SR+  P P+ ++   D     KDS     S +  +D
Sbjct: 114 VVSNLVPVQSASRFSEPDSRDWRSRSTQPPPSGEERSWDNLREAKDSRYVEASQYNRQD 172


>tr|Q8H179|Q8H179_ARATH Eukaryotic initiation factor 4, eIF4-like
           protein OS=Arabidopsis thaliana GN=At5g57870 PE=2 SV=1
          Length = 780

 Score = 39.3 bits (90), Expect = 0.21
 Identities = 49/179 (27%), Positives = 67/179 (37%), Gaps = 16/179 (8%)
 Frame = +3

Query: 150 QSDQTV-SLRPCGGKG-RLFGPRXXXXXXXXXXXXXXXX--------FPDPLFPTRLNDG 299
           Q DQTV SLRP GG+G RLFG                           P   FP +    
Sbjct: 3   QGDQTVLSLRPGGGRGNRLFGSSSSSSSLSFGSLSSSDLPLLRPHGGAPASSFPFK---- 58

Query: 300 LGSDSRSQKPSSERIRYSRXXXXXXXXXXXXIPPDIKTGXXXXXXXXXXXXXXXWARP-- 473
            G DSR      ER++Y+R                ++                 WAR   
Sbjct: 59  -GGDSRFD--GRERVKYTREQLLELKETTQLSDEILRV--QRETAAELFGEEGTWARGES 113

Query: 474 -ATNAQAPPSAPRYTETDNRDWKSRAPLPYPTPDDXGRD---VPKDSGKRSDSDWREKD 638
             +N     SA R++E D+RDW+SR+  P P+ ++   D     KDS     S +  +D
Sbjct: 114 VVSNLVPVQSASRFSEPDSRDWRSRSTQPPPSGEERSWDNLREAKDSRYVEASQYNRQD 172


>tr|A9RXH5|A9RXH5_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_20993 PE=4 SV=1
          Length = 688

 Score = 39.3 bits (90), Expect = 0.21
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 495 PSAPRY--TETDNRDWKSRAPLPYPTPDDXGRDVPKD 599
           P +P +   E DNRDWKSRAP+P PT     R   +D
Sbjct: 51  PQSPAFGGAEPDNRDWKSRAPIPAPTVAQEDRSSSRD 87


>tr|A9RXH0|A9RXH0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_20976 PE=4 SV=1
          Length = 691

 Score = 39.3 bits (90), Expect = 0.21
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 495 PSAPRY--TETDNRDWKSRAPLPYPTPDDXGRDVPKD 599
           P +P +   E DNRDWKSRAP+P PT     R   +D
Sbjct: 51  PQSPAFGGAEPDNRDWKSRAPIPAPTVAQEDRSSSRD 87


>tr|Q8H0T8|Q8H0T8_ARATH Eukaryotic initiation factor 4, eIF4-like
           protein OS=Arabidopsis thaliana GN=At5g57870 PE=2 SV=1
          Length = 776

 Score = 38.5 bits (88), Expect = 0.36
 Identities = 48/176 (27%), Positives = 66/176 (37%), Gaps = 13/176 (7%)
 Frame = +3

Query: 150 QSDQTV-SLRPCGGKG-RLFGPRXXXXXXXXXXXXXXXX--------FPDPLFPTRLNDG 299
           Q DQTV SLRP GG+G RLFG                           P   FP +    
Sbjct: 3   QGDQTVLSLRPGGGRGNRLFGSSSSSSSLSFGSLSSSDLPLLRPHGGAPASSFPFK---- 58

Query: 300 LGSDSRSQKPSSERIRYSRXXXXXXXXXXXXIPPDIKTGXXXXXXXXXXXXXXXWARPAT 479
            G DSR      ER++Y+R                ++                 WAR   
Sbjct: 59  -GGDSRFD--GRERVKYTREQLLELKETTQLSDEILRV--QRETAAELFGEEGTWAR-GE 112

Query: 480 NAQAPPSAPRYTETDNRDWKSRAPLPYPTPDDXGRD---VPKDSGKRSDSDWREKD 638
           +     SA R++E D+RDW+SR+  P P+ ++   D     KDS     S +  +D
Sbjct: 113 SVVPVQSASRFSEPDSRDWRSRSTQPPPSGEERSWDNLREAKDSRYVEASQYNRQD 168


>tr|Q9FJM7|Q9FJM7_ARATH Eukaryotic initiation factor 4, eIF4-like
           protein OS=Arabidopsis thaliana PE=4 SV=1
          Length = 751

 Score = 37.7 bits (86), Expect = 0.62
 Identities = 43/156 (27%), Positives = 59/156 (37%), Gaps = 10/156 (6%)
 Frame = +3

Query: 150 QSDQTV-SLRPCGGKG-RLFGPRXXXXXXXXXXXXXXXX--------FPDPLFPTRLNDG 299
           Q DQTV SLRP GG+G RLFG                           P   FP +    
Sbjct: 3   QGDQTVLSLRPGGGRGNRLFGSSSSSSSLSFGSLSSSDLPLLRPHGGAPASSFPFK---- 58

Query: 300 LGSDSRSQKPSSERIRYSRXXXXXXXXXXXXIPPDIKTGXXXXXXXXXXXXXXXWARPAT 479
            G DSR      ER++Y+R                ++                 WAR   
Sbjct: 59  -GGDSRFD--GRERVKYTREQLLELKETTQLSDEILRV--QRETAAELFGEEGTWAR-GE 112

Query: 480 NAQAPPSAPRYTETDNRDWKSRAPLPYPTPDDXGRD 587
           +     SA R++E D+RDW+SR+  P P+ ++   D
Sbjct: 113 SVVPVQSASRFSEPDSRDWRSRSTQPPPSGEERSWD 148


>tr|Q8W4L4|Q8W4L4_ARATH Putative eukaryotic initiation factor 4,
           eIF4 OS=Arabidopsis thaliana GN=At2g24050/T29E15.25 PE=2
           SV=1
          Length = 747

 Score = 37.4 bits (85), Expect = 0.81
 Identities = 38/158 (24%), Positives = 57/158 (36%), Gaps = 3/158 (1%)
 Frame = +3

Query: 165 VSLRPCGG--KGRLFGPRXXXXXXXXXXXXXXXXFPDPLFPTRLNDGLGSDSRSQKPSSE 338
           +SLRP GG  K RLF PR                 P P+               ++ S E
Sbjct: 10  LSLRPGGGGGKSRLFVPRFSSSSSFDLTNGGSEETPFPV--------------KRENSGE 55

Query: 339 RIRYSRXXXXXXXXXXXXIPPDIKTGXXXXXXXXXXXXXXXWARPATNAQAPPSAP-RYT 515
           R+R+SR                ++                 W   A  ++       R+T
Sbjct: 56  RVRFSREEILQHRESVQVSDEILRR--CKEIAVELFGEEQSWGNHAAESKITNHTQHRHT 113

Query: 516 ETDNRDWKSRAPLPYPTPDDXGRDVPKDSGKRSDSDWR 629
           ETDNRDW SR+ +P       G++  +D  + + S W+
Sbjct: 114 ETDNRDWHSRSQIP-----TSGKEWLRDDPREAKSTWQ 146