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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950492
Clone id TST38A01NGRL0008_M19
Library
Length 518
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_M19. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
GAAGCTTTGTATCTAAACTTTTTGACCGTCCACTATAACAATTCAGATGTATCTGGAAAA
CAAAAGAAACTTCAATGACTTGTTGGCAGAGGCTTGTATCTTGGTCTTTGTGATCCATGA
CACATATGCTTCATTCGAGGCACTTGAATAATGAGGTGGGTTGGAGTACTGGACACGATA
GGCTCAACAGCGGCATAATCTATCAAAAAATCCTGAACAGTGAATGGGAAATCAATGCAA
AGACATTATTTTGTCAGCTGTTCGTCATGAAAGCCAGATTGGCTTCAAAGTGAATTTTGC
TCTTCAAATCAATGGTGAATTTTAAACCATATATTTTCCTTGGGGCACCGATTGTTGTTT
ATTCAGTGTGATTGGGTTATGTGAGTTGTTCGAATTGATGGTTGACAATCAGTTGTATAG
ATTTTTTTGTCTATCTTTGACATTTTGTATAGATTCACTTGTTATATGAATAAACGAGAA
GCCTCAAGACGACTCAGTCGTTTCTGGTCTGCTGAAAA
■■Homology search results ■■ -
sp_hit_id P0C184
Definition sp|P0C184|ULAA_SHISS Putative ascorbate-specific permease IIC component ulaA OS=Shigella sonnei (strain Ss046)
Align length 23
Score (bit) 30.4
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950492|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_M19, 5'
         (503 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0C184|ULAA_SHISS Putative ascorbate-specific permease IIC co...    30   4.9  
sp|Q328K4|ULAA_SHIDS Ascorbate-specific permease IIC component u...    30   4.9  
sp|Q31TC4|ULAA_SHIBS Ascorbate-specific permease IIC component u...    30   4.9  
sp|Q8ZK90|ULAA_SALTY Ascorbate-specific permease IIC component u...    30   4.9  
sp|Q8Z172|ULAA_SALTI Ascorbate-specific permease IIC component u...    30   4.9  
sp|Q5PJ48|ULAA_SALPA Ascorbate-specific permease IIC component u...    30   4.9  
sp|Q57GJ9|ULAA_SALCH Ascorbate-specific permease IIC component u...    30   4.9  
sp|P39301|ULAA_ECOLI Ascorbate-specific permease IIC component u...    30   4.9  
sp|Q8FAJ3|ULAA_ECOL6 Ascorbate-specific permease IIC component u...    30   4.9  
sp|Q8XDJ5|ULAA_ECO57 Ascorbate-specific permease IIC component u...    30   4.9  
sp|Q83II9|ULAA_SHIFL Ascorbate-specific permease IIC component u...    30   6.4  

>sp|P0C184|ULAA_SHISS Putative ascorbate-specific permease IIC
           component ulaA OS=Shigella sonnei (strain Ss046) GN=ulaA
           PE=5 SV=1
          Length = 465

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 42  FRCIWKTKETSMTCWQRLVSWSL 110
           F C+W  K T M+ W  +  WS+
Sbjct: 393 FGCVWAVKLTGMSAWMGMADWSI 415


>sp|Q328K4|ULAA_SHIDS Ascorbate-specific permease IIC component ulaA
           OS=Shigella dysenteriae serotype 1 (strain Sd197)
           GN=ulaA PE=2 SV=2
          Length = 465

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 42  FRCIWKTKETSMTCWQRLVSWSL 110
           F C+W  K T M+ W  +  WS+
Sbjct: 393 FGCVWAVKLTGMSAWMGMADWSI 415


>sp|Q31TC4|ULAA_SHIBS Ascorbate-specific permease IIC component ulaA
           OS=Shigella boydii serotype 4 (strain Sb227) GN=ulaA
           PE=2 SV=2
          Length = 456

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 42  FRCIWKTKETSMTCWQRLVSWSL 110
           F C+W  K T M+ W  +  WS+
Sbjct: 384 FGCVWAVKLTGMSAWMGMADWSI 406


>sp|Q8ZK90|ULAA_SALTY Ascorbate-specific permease IIC component ulaA
           OS=Salmonella typhimurium GN=ulaA PE=2 SV=2
          Length = 465

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 42  FRCIWKTKETSMTCWQRLVSWSL 110
           F C+W  K T M+ W  +  WS+
Sbjct: 393 FGCVWAVKLTGMSAWMGMADWSI 415


>sp|Q8Z172|ULAA_SALTI Ascorbate-specific permease IIC component ulaA
           OS=Salmonella typhi GN=ulaA PE=2 SV=2
          Length = 465

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 42  FRCIWKTKETSMTCWQRLVSWSL 110
           F C+W  K T M+ W  +  WS+
Sbjct: 393 FGCVWAVKLTGMSAWMGMADWSI 415


>sp|Q5PJ48|ULAA_SALPA Ascorbate-specific permease IIC component ulaA
           OS=Salmonella paratyphi A GN=ulaA PE=2 SV=2
          Length = 465

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 42  FRCIWKTKETSMTCWQRLVSWSL 110
           F C+W  K T M+ W  +  WS+
Sbjct: 393 FGCVWAVKLTGMSAWMGMADWSI 415


>sp|Q57GJ9|ULAA_SALCH Ascorbate-specific permease IIC component ulaA
           OS=Salmonella choleraesuis GN=ulaA PE=2 SV=2
          Length = 465

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 42  FRCIWKTKETSMTCWQRLVSWSL 110
           F C+W  K T M+ W  +  WS+
Sbjct: 393 FGCVWAVKLTGMSAWMGMADWSI 415


>sp|P39301|ULAA_ECOLI Ascorbate-specific permease IIC component ulaA
           OS=Escherichia coli (strain K12) GN=ulaA PE=1 SV=3
          Length = 465

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 42  FRCIWKTKETSMTCWQRLVSWSL 110
           F C+W  K T M+ W  +  WS+
Sbjct: 393 FGCVWAVKLTGMSAWMGMADWSI 415


>sp|Q8FAJ3|ULAA_ECOL6 Ascorbate-specific permease IIC component ulaA
           OS=Escherichia coli O6 GN=ulaA PE=2 SV=1
          Length = 465

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 42  FRCIWKTKETSMTCWQRLVSWSL 110
           F C+W  K T M+ W  +  WS+
Sbjct: 393 FGCVWAVKLTGMSAWMGMADWSI 415


>sp|Q8XDJ5|ULAA_ECO57 Ascorbate-specific permease IIC component ulaA
           OS=Escherichia coli O157:H7 GN=ulaA PE=2 SV=3
          Length = 465

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 42  FRCIWKTKETSMTCWQRLVSWSL 110
           F C+W  K T M+ W  +  WS+
Sbjct: 393 FGCVWAVKLTGMSAWMGMADWSI 415
tr_hit_id Q54S52
Definition tr|Q54S52|Q54S52_DICDI Involucrin repeat-containing protein OS=Dictyostelium discoideum
Align length 51
Score (bit) 34.3
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950492|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_M19, 5'
         (503 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q54S52|Q54S52_DICDI Involucrin repeat-containing protein OS=D...    34   3.4  

>tr|Q54S52|Q54S52_DICDI Involucrin repeat-containing protein
            OS=Dictyostelium discoideum GN=DDB_0218401 PE=4 SV=1
          Length = 3080

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -3

Query: 501  TTESS*GFSFIHITSESIQNVKDRQKNLYN*LSTINSNNSHNPITLNKQQS 349
            T   S G + + + S S+Q   D++ N YN L+ + SNNS+N    N+  S
Sbjct: 2800 TLTRSGGVNSVIVGSNSVQLKPDQELNFYNILTRVQSNNSNNSNNPNENSS 2850