DK950494 [AcEST]

DK950494
Clone id	TST38A01NGRL0008_M21
Library	TST38
Length	793
Definition	Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_M21. 5' end sequence.
Accession	DK950494
Tissue type	prothallia
Developmental stage	gametophyte
Contig ID	-
Sequence	GAGCATGATGACAGGGATGACCGATCTATCAGTTTTTCTATCTCACACGCAAGATCCCCC GAGTTGTGCGAACTTCTATACACGAAGAAAAACAAGCGGTGAAACTTCTGGGCTTGAAAT CTCAGGCTTACATTCCACCTGTAATTCCACGTGGCAGCAAATTGATGCTTCTTAGGTCCG GAGCTTGCTCAGCTGTAACCCTGTATTTTTATGGGATGCCAATTATTAGCTCTTTGCAAA AGCACAAAGACTGCCTCCAACCCTGTCCAACAGCGTACAGCCGACGGCCACCGCGGCCCG CCACCCACTGGCAACAGCAGCACAACAACCATCAGCAATGTGGGCATGCGCTTGCCCGCG AGGGGGACAACCCACAACACCATCCACCATAGCCTAGGGAGGAGAGCTCCGTTCCTGCTG TACATATTTGTAGGTGCTCTTTTTAGATATTTTCATGATTGTGTATGCAGATCATGTGGT TGCTCCATTGTGTAGAAATCGCAGCACTGTCGAATGTAGGCAGTTTCTTAGAGAGGTCCA TGTCGAAGTACGATATGTATACCAGGAGATACGTTCTGAACGATGAGGTTAAATTACCTG AGATTTTGCAATAAGATGAGTGCACACATTTTTCTTTGTGCAAATAAATTTTATAAGAGA ATTGTACATATTTCACACGTCAAGTTTTCAGACATGCCTACAATTCTTGTACTCCAAGTT GGGATTTCCTTGGTTACCTGGAAAATAACCCGGTGGGTTAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q8CB65
Definition	sp\|Q8CB65\|T194B_MOUSE Transmembrane protein 194B OS=Mus musculus
Align length	16
Score (bit)	35.0
E-value	0.45
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK950494\|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0008_M21, 5' (759 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q8CB65\|T194B_MOUSE Transmembrane protein 194B OS=Mus musculus... 35 0.45 sp\|P22105\|TENX_HUMAN Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=2 32 2.9 >sp\|Q8CB65\|T194B_MOUSE Transmembrane protein 194B OS=Mus musculus GN=Tmem194b PE=2 SV=3 Length = 421 Score = 35.0 bits (79), Expect = 0.45 Identities = 12/16 (75%), Positives = 15/16 (93%) Frame = -2 Query: 404 LLPRLWWMVLWVVPLA 357 +LPRLWW+VLW+ PLA Sbjct: 1 MLPRLWWLVLWLQPLA 16 >sp\|P22105\|TENX_HUMAN Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=2 Length = 4289 Score = 32.3 bits (72), Expect = 2.9 Identities = 23/65 (35%), Positives = 24/65 (36%) Frame = -3 Query: 424 CTAGTELSSLGYGGWCCGLSPSRASACPHXXXXXXXXCQWVAGRGGRRLYAVGQGWRQSL 245 C G L +GYGG CG ASACP G G R L GQ Sbjct: 662 CVQGVCLCHVGYGGEDCGQEEPPASACP-------------GGCGPRELCRAGQ------ 702 Query: 244 CFCKE 230 C C E Sbjct: 703 CVCVE 707
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	B6MYN3
Definition	tr\|B6MYN3\|B6MYN3_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length	56
Score (bit)	36.6
E-value	1.9
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK950494\|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0008_M21, 5' (759 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|B6MYN3\|B6MYN3_BRAFL Putative uncharacterized protein OS=Branc... 37 1.9 >tr\|B6MYN3\|B6MYN3_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_88412 PE=4 SV=1 Length = 1490 Score = 36.6 bits (83), Expect = 1.9 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Frame = +3 Query: 132 IPPVIPRGSKLMLLRSGACSAVTLYFYGMPIISSLQK----HKDCLQPCPTAYSRR 287 IPP IPRG+K + L+ ++ + +G P++ SL+K H + + P A+S R Sbjct: 798 IPPDIPRGTKYLQLQHNRIRSLGPHVFGPPVLRSLRKLNLSHNELVSVHPDAFSYR 853