DK950496 |
Clone id |
TST38A01NGRL0008_M23 |
Library |
TST38 |
Length |
651 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_M23. 5' end sequence. |
Accession |
DK950496 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
CGGCGATCGACCGAAGGACTCTTTCGTGCCGCGAGACGTATAGACTCTGCACACTGTATC TGCTATATCCTTCTTCTCGGCAGGAGCAAGCACTCAATAAGTAAGCACTCCCTGTCTTCA AGGCCACCAGGTTGAGCGAAGCGCAATTGAAGTCAGGGTCCGTATATGGCACCTTCGCCT TCAGACCTGCGGTTTTCCCCTCAGCTGTCCCCAGGTCTCGTTTGCTCCACTCACAAAGAT GCATTCCACAGTCTGGGCCAACCACAGATGTTCAGCCCAGACACTGTTTCAAATTGCCAT ATGGGCAGGCCAAGGTGTCTCCGAGAAGATATGTCACGACAGCTTAACATCCACTATCAT CATTCAGCCTGTGCTTGTTCTGCCAGCCCTACGAATCTCACAACCAGACATGAAAGTCCT GCCTCTTCTCTCATGTATGAGCATTATCCCAACTGGGATACAAGAAATGCTGCCTTGTCA ACAGTACCAGACGACGATTCTGATGTCTTGATCGAATGTCGAAACGTACATAAATACTTT GGAGAGAAGCACATTTTGAGAGGCGCTAGCTTTAAGATTCGTTATGGTGAGGCTGTGGGT ATTATTGGACCCTCTGGTACAGGANAATCCACTATCTTGCGAATAATGGCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9AT00 |
Definition |
sp|Q9AT00|NAP11_ARATH Non-intrinsic ABC protein 11, chloroplastic OS=Arabidopsis thaliana |
Align length |
54 |
Score (bit) |
65.1 |
E-value |
3.0e-10 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B0KYV3 |
Definition |
tr|B0KYV3|B0KYV3_GOSBA ABC transporter II-like protein OS=Gossypium barbadense |
Align length |
123 |
Score (bit) |
74.7 |
E-value |
5.0e-12 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950496|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0008_M23, 5' (651 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B0KYV3|B0KYV3_GOSBA ABC transporter II-like protein OS=Gossyp... 75 5e-12 tr|A7PVA1|A7PVA1_VITVI Chromosome chr4 scaffold_32, whole genome... 74 8e-12 tr|A5ALW1|A5ALW1_VITVI Putative uncharacterized protein OS=Vitis... 63 1e-08 tr|Q283I8|Q283I8_STERE ABC transporter OS=Stevia rebaudiana PE=2... 61 5e-08 tr|Q10FF1|Q10FF1_ORYSJ Os03g0670100 protein OS=Oryza sativa subs... 60 9e-08 tr|Q10FF0|Q10FF0_ORYSJ ABC transporter family protein, expressed... 60 9e-08 tr|B8AP35|B8AP35_ORYSI Putative uncharacterized protein OS=Oryza... 60 9e-08 tr|A9RN12|A9RN12_PHYPA ATP-binding cassette transporter, subfami... 60 2e-07 tr|Q7Y189|Q7Y189_ORYSJ Putative ABC transporter, 5'-partial (Fra... 59 3e-07 tr|Q6ASX4|Q6ASX4_ORYSJ ABC transporter ATP-binding protein, puta... 59 3e-07 tr|Q013G7|Q013G7_OSTTA Putative ABC transporter, 5'-partial (ISS... 50 9e-05 tr|A1KA07|A1KA07_AZOSB ABC transporter ATP-binding protein OS=Az... 42 0.033 tr|Q84HI4|Q84HI4_AZOEV ABC-transporter OS=Azoarcus evansii PE=3 ... 42 0.033 tr|Q46NG9|Q46NG9_RALEJ ABC transporter related OS=Ralstonia eutr... 41 0.073 tr|Q128Y9|Q128Y9_POLSJ ABC transporter related OS=Polaromonas sp... 41 0.073 tr|A5V0E4|A5V0E4_ROSS1 ABC transporter related OS=Roseiflexus sp... 40 0.095 tr|Q47CD3|Q47CD3_DECAR ABC transporter related OS=Dechloromonas ... 40 0.16 tr|A7NJ82|A7NJ82_ROSCS ABC transporter related OS=Roseiflexus ca... 40 0.16 tr|Q9CEP0|Q9CEP0_LACLA Glutamate ABC transporter ATP-binding pro... 39 0.21 tr|Q6F728|Q6F728_ACIAD Putative amino acid transport protein (AB... 39 0.21 tr|Q2JUY5|Q2JUY5_SYNJA Polar amino amino acid ABC transporter (P... 39 0.21 tr|Q2JMW5|Q2JMW5_SYNJB Polar amino amino acid ABC transporter (P... 39 0.21 tr|Q02X63|Q02X63_LACLS ABC-type polar amino acid transport syste... 39 0.21 tr|A2RML5|A2RML5_LACLM Glutamate ABC transporter ATP-binding pro... 39 0.21 tr|Q12D38|Q12D38_POLSJ ABC transporter related OS=Polaromonas sp... 39 0.28 tr|Q2PY73|Q2PY73_9BACT ABC transporter ATP-binding protein OS=un... 39 0.28 tr|B0NFD6|B0NFD6_EUBSP Putative uncharacterized protein OS=Clost... 39 0.28 tr|Q72FV8|Q72FV8_DESVH Glutamine ABC transporter, ATP-binding pr... 39 0.36 tr|Q3J201|Q3J201_RHOS4 ABC spermidine/putrescine transporter, AT... 39 0.36 tr|Q213D7|Q213D7_RHOPB ABC transporter related OS=Rhodopseudomon... 39 0.36
>tr|B0KYV3|B0KYV3_GOSBA ABC transporter II-like protein OS=Gossypium barbadense PE=2 SV=1 Length = 349
Score = 74.7 bits (182), Expect = 5e-12 Identities = 48/123 (39%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Frame = +1
Query: 292 NCHMGRPR---CLREDMSRQLNIHYHHSACACSASPTNLTTRHESPASSLMYEHYPNWDT 462 +C +G+ R C + Q N+ CAC A PT R E + Sbjct: 22 HCDLGKERSKFCCFNEKKEQRNV-----ICACMAPPTKNLGRDEFHGTKFTESSKYG--- 73
Query: 463 RNAALSTVPDDDSDVLIECRNVHKYFGEKHILRGASFKIRYGEAVXXXXXXXXXXXXXLR 642 N + ++DSDVLIECRNV+K FGEKHILRG SFKIR+GEAV L+ Sbjct: 74 -NFSKEVKHENDSDVLIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILK 132
Query: 643 IMA 651 I+A Sbjct: 133 IIA 135
>tr|A7PVA1|A7PVA1_VITVI Chromosome chr4 scaffold_32, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00025111001 PE=3 SV=1 Length = 749
Score = 73.9 bits (180), Expect = 8e-12 Identities = 42/94 (44%), Positives = 53/94 (56%) Frame = +1
Query: 370 CACSASPTNLTTRHESPASSLMYEHYPNWDTRNAALSTVPDDDSDVLIECRNVHKYFGEK 549 CAC A P NL T + H +N ++ +DDSDVL+ECR+V+K FGEK Sbjct: 447 CACMAPPRNLRTDGFAATKFNDSSHL-----KNPSVDGDREDDSDVLVECRDVYKSFGEK 501
Query: 550 HILRGASFKIRYGEAVXXXXXXXXXXXXXLRIMA 651 HILRG SFKIR+GEAV L+I+A Sbjct: 502 HILRGVSFKIRHGEAVGIIGPSGTGKSTVLKIIA 535
>tr|A5ALW1|A5ALW1_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000806 PE=4 SV=1 Length = 640
Score = 63.2 bits (152), Expect = 1e-08 Identities = 40/107 (37%), Positives = 53/107 (49%), Gaps = 4/107 (3%) Frame = +1
Query: 277 PDTVSNCHMGRPRCLREDMSRQLNIHYH----HSACACSASPTNLTTRHESPASSLMYEH 444 P + CH R ++ LN H + CAC A P NL T + H Sbjct: 525 PGVLPICHWSN-RFAAPGNAKALNWRSHGQKRNIVCACMAPPRNLRTDGFAATKFNDSSH 583
Query: 445 YPNWDTRNAALSTVPDDDSDVLIECRNVHKYFGEKHILRGASFKIRY 585 +N + +DDSDVL+ECR+V+K FGEKHILRG SFK+ + Sbjct: 584 L-----KNPSXDGDREDDSDVLVECRDVYKSFGEKHILRGVSFKLLF 625
>tr|Q283I8|Q283I8_STERE ABC transporter OS=Stevia rebaudiana PE=2 SV=1 Length = 344
Score = 61.2 bits (147), Expect = 5e-08 Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Frame = +1
Query: 376 CSASPTNLTTRHESPASSLMYEHYPNWDTRNAALSTVPDD--DSDVLIECRNVHKYFGEK 549 CS +P NL +E S ++ +L+ +D DS VL+EC++V+K FGEK Sbjct: 47 CSIAPQNLKPANEFRTSKF----------KDPSLNLFTEDSKDSGVLLECKDVYKSFGEK 96
Query: 550 HILRGASFKIRYGEAVXXXXXXXXXXXXXLRIMA 651 HILRG +F+I+YGEAV L+I A Sbjct: 97 HILRGVNFRIKYGEAVGIIGPSGTGKSTILKIFA 130
>tr|Q10FF1|Q10FF1_ORYSJ Os03g0670100 protein OS=Oryza sativa subsp. japonica GN=Os03g0670100 PE=2 SV=1 Length = 353
Score = 60.5 bits (145), Expect = 9e-08 Identities = 38/102 (37%), Positives = 51/102 (50%), Gaps = 2/102 (1%) Frame = +1
Query: 352 HYHHSACACSASPT--NLTTRHESPASSLMYEHYPNWDTRNAALSTVPDDDSDVLIECRN 525 H + A + + SP N ESP+ S R+ ++ DD D+LIECR+ Sbjct: 48 HVYAGAVSATRSPGLGNAENLRESPSLS-----------RSWGMNGQIGDDHDILIECRD 96
Query: 526 VHKYFGEKHILRGASFKIRYGEAVXXXXXXXXXXXXXLRIMA 651 VHK FG K +L G SFKIR+GEAV L++MA Sbjct: 97 VHKSFGNKKVLNGISFKIRHGEAVGIIGPSGTGKSTVLKVMA 138
>tr|Q10FF0|Q10FF0_ORYSJ ABC transporter family protein, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os03g46740 PE=3 SV=1 Length = 341
Score = 60.5 bits (145), Expect = 9e-08 Identities = 38/102 (37%), Positives = 51/102 (50%), Gaps = 2/102 (1%) Frame = +1
Query: 352 HYHHSACACSASPT--NLTTRHESPASSLMYEHYPNWDTRNAALSTVPDDDSDVLIECRN 525 H + A + + SP N ESP+ S R+ ++ DD D+LIECR+ Sbjct: 36 HVYAGAVSATRSPGLGNAENLRESPSLS-----------RSWGMNGQIGDDHDILIECRD 84
Query: 526 VHKYFGEKHILRGASFKIRYGEAVXXXXXXXXXXXXXLRIMA 651 VHK FG K +L G SFKIR+GEAV L++MA Sbjct: 85 VHKSFGNKKVLNGISFKIRHGEAVGIIGPSGTGKSTVLKVMA 126
>tr|B8AP35|B8AP35_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_12950 PE=4 SV=1 Length = 353
Score = 60.5 bits (145), Expect = 9e-08 Identities = 38/102 (37%), Positives = 51/102 (50%), Gaps = 2/102 (1%) Frame = +1
Query: 352 HYHHSACACSASPT--NLTTRHESPASSLMYEHYPNWDTRNAALSTVPDDDSDVLIECRN 525 H + A + + SP N ESP+ S R+ ++ DD D+LIECR+ Sbjct: 48 HVYAGAVSATRSPGLGNAENLRESPSLS-----------RSWGMNGQIGDDHDILIECRD 96
Query: 526 VHKYFGEKHILRGASFKIRYGEAVXXXXXXXXXXXXXLRIMA 651 VHK FG K +L G SFKIR+GEAV L++MA Sbjct: 97 VHKSFGNKKVLNGISFKIRHGEAVGIIGPSGTGKSTVLKVMA 138
>tr|A9RN12|A9RN12_PHYPA ATP-binding cassette transporter, subfamily I, member 2, ABC component protein PpABCI2 OS=Physcomitrella patens subsp. patens GN=ppabci2 PE=3 SV=1 Length = 292
Score = 59.7 bits (143), Expect = 2e-07 Identities = 33/65 (50%), Positives = 41/65 (63%) Frame = +1
Query: 457 DTRNAALSTVPDDDSDVLIECRNVHKYFGEKHILRGASFKIRYGEAVXXXXXXXXXXXXX 636 D +A DD+++VLIEC +V+K FGEK IL+GASFKIR+GEAV Sbjct: 13 DLVSARAKHAVDDNAEVLIECCDVYKSFGEKPILQGASFKIRHGEAVGIIGPSGTGKSTI 72
Query: 637 LRIMA 651 LRIMA Sbjct: 73 LRIMA 77
>tr|Q7Y189|Q7Y189_ORYSJ Putative ABC transporter, 5'-partial (Fragment) OS=Oryza sativa subsp. japonica GN=OSJNBa0039O18.1 PE=3 SV=1 Length = 281
Score = 58.9 bits (141), Expect = 3e-07 Identities = 28/53 (52%), Positives = 34/53 (64%) Frame = +1
Query: 493 DDSDVLIECRNVHKYFGEKHILRGASFKIRYGEAVXXXXXXXXXXXXXLRIMA 651 DD D+LIECR+VHK FG K +L G SFKIR+GEAV L++MA Sbjct: 14 DDHDILIECRDVHKSFGNKKVLNGISFKIRHGEAVGIIGPSGTGKSTVLKVMA 66
>tr|Q6ASX4|Q6ASX4_ORYSJ ABC transporter ATP-binding protein, putative OS=Oryza sativa subsp. japonica GN=B1130H05.8 PE=3 SV=1 Length = 279
Score = 58.9 bits (141), Expect = 3e-07 Identities = 28/53 (52%), Positives = 34/53 (64%) Frame = +1
Query: 493 DDSDVLIECRNVHKYFGEKHILRGASFKIRYGEAVXXXXXXXXXXXXXLRIMA 651 DD D+LIECR+VHK FG K +L G SFKIR+GEAV L++MA Sbjct: 38 DDHDILIECRDVHKSFGNKKVLNGISFKIRHGEAVGIIGPSGTGKSTVLKVMA 90
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