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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950504
Clone id TST38A01NGRL0008_N08
Library
Length 642
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_N08. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CGTGGGATCTTGGTCTTCATCGAAAGCGGGGGTTTCCTCCTGCTCTATTGCGTGCTCACG
CATACACAGACGCACAACACAACCCAACCCAAGGGCGTCCCTCCCGTGAGTTTCTCCTAC
CCACTCTCCTCTCACAGGTAAAACCGAGCGTTCATGGAAGCTTCCTCTCTGCAGACGCAA
AAGTAAAGTTCTCTCCTTTGGGTTGCTTTCTGCCCCCTTCTAATGTTACAATCTTCGGGG
CTCTCGATCGAGCTTTGCATTACTCTCTGGTGATGCATGCAATGGCTGCAGTTCCCTCTC
TTCATCATAGCGGCCTCACCGCCTCCTGCGCAGAGCTCCCTGCGGCCTTACCTTCATCAG
AGTTCAGTGGGTCTTCCTACCGGGCAGTACCTATGTGCATTTTAGTCGAAAAGCAGCACC
AGCTGAGGGGCTTTGCGTCAACAACCCCCTATCTGACAGGGGGACAACAAAGGAGAAGGA
AAAATTATGGGATTTTCTCTTCCGAACTCAGCAACACAGCTGTGGAGCGACTGCTGGAAT
TTGCGAGAGAGCCAGCTCCTTCAGAACAAGGCCAGCTAATCAGTGGGCTTCAAAGTGCGG
AGCTCGCCAGGAGTGACCTTGAAGAGGGCAATAGGCGAACTA
■■Homology search results ■■ -
sp_hit_id Q9Z221
Definition sp|Q9Z221|PMFBP_RAT Polyamine-modulated factor 1-binding protein 1 OS=Rattus norvegicus
Align length 84
Score (bit) 33.9
E-value 0.74
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950504|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_N08, 5'
         (642 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Z221|PMFBP_RAT Polyamine-modulated factor 1-binding protein...    34   0.74 
sp|Q5G269|NETR_PONPY Neurotrypsin OS=Pongo pygmaeus GN=PRSS12 PE...    25   3.5  
sp|A1VRP1|T23O_POLNA Tryptophan 2,3-dioxygenase OS=Polaromonas n...    31   6.3  

>sp|Q9Z221|PMFBP_RAT Polyamine-modulated factor 1-binding protein 1
           OS=Rattus norvegicus GN=Pmfbp1 PE=2 SV=2
          Length = 971

 Score = 33.9 bits (76), Expect = 0.74
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
 Frame = +3

Query: 396 CILVEKQHQLRGFASTTPYLTGGQQRRRKNYGIFSSELSNTAVERL---LEFAREPAPSE 566
           C+ +EK+ +L    STT  L    Q  R++     +E   + +++L   LE ARE     
Sbjct: 384 CLFLEKETELEKLQSTTKELDANLQEVRQSTSKIDNEGLRSEIQKLKESLEEAREQLRVS 443

Query: 567 QGQLISGLQSAELARSDLEEGNRR 638
              L      A L+ ++LE+ +R+
Sbjct: 444 DQNLSQCKDEAHLSANNLEDAHRK 467


>sp|Q5G269|NETR_PONPY Neurotrypsin OS=Pongo pygmaeus GN=PRSS12 PE=3
           SV=1
          Length = 877

 Score = 25.4 bits (54), Expect(2) = 3.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 274 CMQWLQFPLFIIAASPPPAQSSLRPYLH 357
           C+QW + P F +  SPP + + LR   H
Sbjct: 111 CLQWAEVPPF-LERSPPASWAQLRGQRH 137



 Score = 25.0 bits (53), Expect(2) = 3.5
 Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
 Frame = +3

Query: 18  HRKRGFPPALLRAHAYTDAQHNPTQGRPSREFLLPTLLSQVKPSVHGSFLSADAKVKFSP 197
           HR R  PP  L+   Y   Q  P + RP           +  P+     L A    +  P
Sbjct: 33  HRHRHSPPPGLQYPYYLPTQQRPPRTRPPPPLPRFPRPPRALPAQRPHALQAGHTPRPHP 92

Query: 198 LGCFL--PPSNVTIFGA 242
            GC    P  +VT FGA
Sbjct: 93  WGCPAGEPWVSVTDFGA 109


>sp|A1VRP1|T23O_POLNA Tryptophan 2,3-dioxygenase OS=Polaromonas
           naphthalenivorans (strain CJ2) GN=kynA PE=3 SV=1
          Length = 282

 Score = 30.8 bits (68), Expect = 6.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 304 IIAASPPPAQSSLRPYLHQSSVGLPTGQYLC 396
           ++A   PP  S++RPYL  SS G  + QY C
Sbjct: 104 VLATMTPPEYSAIRPYLASSS-GFQSAQYRC 133
tr_hit_id Q8ZNP0
Definition tr|Q8ZNP0|Q8ZNP0_SALTY Putative glycohydrolase OS=Salmonella typhimurium
Align length 71
Score (bit) 35.0
E-value 3.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950504|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_N08, 5'
         (642 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8ZNP0|Q8ZNP0_SALTY Putative glycohydrolase OS=Salmonella typ...    35   3.9  
tr|Q8Z5D1|Q8Z5D1_SALTI Putative hydrolase OS=Salmonella typhi GN...    35   3.9  
tr|Q5PLT9|Q5PLT9_SALPA Putative hydrolase OS=Salmonella paratyph...    35   3.9  
tr|Q57MJ7|Q57MJ7_SALCH Putative glycohydrolase OS=Salmonella cho...    35   3.9  
tr|B5RBY3|B5RBY3_SALG2 Putative hydrolase OS=Salmonella gallinar...    35   3.9  
tr|B5R0D5|B5R0D5_SALEP Putative hydrolase OS=Salmonella enteriti...    35   3.9  
tr|B5FMV8|B5FMV8_SALDC ADP-ribosylglycohydrolase family protein ...    35   3.9  
tr|B5EXY2|B5EXY2_SALA4 ADP-ribosylglycohydrolase family protein ...    35   3.9  
tr|B5BF40|B5BF40_SALPK Putative hydrolase OS=Salmonella paratyph...    35   3.9  
tr|B4TNJ9|B4TNJ9_SALSV ADP-ribosylglycohydrolase family protein ...    35   3.9  
tr|B4T9V7|B4T9V7_SALHS ADP-ribosylglycohydrolase family protein ...    35   3.9  
tr|B4SXX4|B4SXX4_SALNS ADP-ribosylglycohydrolase family protein ...    35   3.9  
tr|A9N7J6|A9N7J6_SALPB Putative uncharacterized protein OS=Salmo...    35   3.9  
tr|B5Q3I2|B5Q3I2_SALVI ADP-ribosylglycohydrolase family protein ...    35   3.9  
tr|B5PQC1|B5PQC1_SALHA ADP-ribosylglycohydrolase family protein ...    35   3.9  
tr|B5PB36|B5PB36_SALET ADP-ribosylglycohydrolase family protein ...    35   3.9  
tr|B5P2Q1|B5P2Q1_SALET ADP-ribosylglycohydrolase family protein ...    35   3.9  
tr|B5NJV9|B5NJV9_SALET ADP-ribosylglycohydrolase family protein ...    35   3.9  
tr|B5NEE0|B5NEE0_SALET ADP-ribosylglycohydrolase family protein ...    35   3.9  
tr|B5MXF2|B5MXF2_SALET ADP-ribosylglycohydrolase family protein ...    35   3.9  
tr|B5MM38|B5MM38_SALET ADP-ribosylglycohydrolase family protein ...    35   3.9  
tr|B5CC70|B5CC70_SALET ADP-ribosylglycohydrolase family protein ...    35   3.9  
tr|B5C5N4|B5C5N4_SALET ADP-ribosylglycohydrolase family protein ...    35   3.9  
tr|B4A888|B4A888_SALNE ADP-ribosylglycohydrolase family protein ...    35   3.9  
tr|B3Y9V8|B3Y9V8_SALET ADP-ribosylglycohydrolase family protein ...    35   3.9  
tr|Q55Q95|Q55Q95_CRYNE Putative uncharacterized protein OS=Crypt...    35   3.9  
tr|A8H4K5|A8H4K5_SHEPA Electron-transferring-flavoprotein dehydr...    34   6.6  
tr|Q393H7|Q393H7_BURS3 Putative uncharacterized protein OS=Burkh...    34   8.7  
tr|B3MXP2|B3MXP2_DROAN GF19405 OS=Drosophila ananassae GN=GF1940...    34   8.7  

>tr|Q8ZNP0|Q8ZNP0_SALTY Putative glycohydrolase OS=Salmonella
           typhimurium GN=yegU PE=4 SV=1
          Length = 334

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +3

Query: 177 AKVKFSPLGCFLPPSNVTIFGALDRALHYSLVMHAMAAVPSLHHSGLTASCAELPAALPS 356
           A ++ SPLGC LPP+N+T F          +   A+A+ P+ H S L  + A + A   S
Sbjct: 133 AAMRVSPLGCLLPPTNLTAF----------IAEVALASSPT-HKSDLAVAGAVVVAWAVS 181

Query: 357 SEFSGSSYRAV 389
              +G +++++
Sbjct: 182 RAVNGDTWQSI 192


>tr|Q8Z5D1|Q8Z5D1_SALTI Putative hydrolase OS=Salmonella typhi
           GN=STY2372 PE=4 SV=1
          Length = 334

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +3

Query: 177 AKVKFSPLGCFLPPSNVTIFGALDRALHYSLVMHAMAAVPSLHHSGLTASCAELPAALPS 356
           A ++ SPLGC LPP+N+T F          +   A+A+ P+ H S L  + A + A   S
Sbjct: 133 AAMRVSPLGCLLPPTNLTAF----------IAEVALASSPT-HKSDLAVAGAVVVAWAVS 181

Query: 357 SEFSGSSYRAV 389
              +G +++++
Sbjct: 182 RAVNGDTWQSI 192


>tr|Q5PLT9|Q5PLT9_SALPA Putative hydrolase OS=Salmonella paratyphi A
           GN=yegU PE=4 SV=1
          Length = 334

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +3

Query: 177 AKVKFSPLGCFLPPSNVTIFGALDRALHYSLVMHAMAAVPSLHHSGLTASCAELPAALPS 356
           A ++ SPLGC LPP+N+T F          +   A+A+ P+ H S L  + A + A   S
Sbjct: 133 AAMRVSPLGCLLPPTNLTAF----------IAEVALASSPT-HKSDLAVAGAVVVAWAVS 181

Query: 357 SEFSGSSYRAV 389
              +G +++++
Sbjct: 182 RAVNGDTWQSI 192


>tr|Q57MJ7|Q57MJ7_SALCH Putative glycohydrolase OS=Salmonella
           choleraesuis GN=yegU PE=4 SV=1
          Length = 334

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +3

Query: 177 AKVKFSPLGCFLPPSNVTIFGALDRALHYSLVMHAMAAVPSLHHSGLTASCAELPAALPS 356
           A ++ SPLGC LPP+N+T F          +   A+A+ P+ H S L  + A + A   S
Sbjct: 133 AAMRVSPLGCLLPPTNLTAF----------IAEVALASSPT-HKSDLAVAGAVVVAWAVS 181

Query: 357 SEFSGSSYRAV 389
              +G +++++
Sbjct: 182 RAVNGDTWQSI 192


>tr|B5RBY3|B5RBY3_SALG2 Putative hydrolase OS=Salmonella gallinarum
           (strain 287/91 / NCTC 13346) GN=yegU PE=4 SV=1
          Length = 334

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +3

Query: 177 AKVKFSPLGCFLPPSNVTIFGALDRALHYSLVMHAMAAVPSLHHSGLTASCAELPAALPS 356
           A ++ SPLGC LPP+N+T F          +   A+A+ P+ H S L  + A + A   S
Sbjct: 133 AAMRVSPLGCLLPPTNLTAF----------IAEVALASSPT-HKSDLAVAGAVVVAWAVS 181

Query: 357 SEFSGSSYRAV 389
              +G +++++
Sbjct: 182 RAVNGDTWQSI 192


>tr|B5R0D5|B5R0D5_SALEP Putative hydrolase OS=Salmonella enteritidis
           PT4 (strain P125109) GN=yegU PE=4 SV=1
          Length = 334

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +3

Query: 177 AKVKFSPLGCFLPPSNVTIFGALDRALHYSLVMHAMAAVPSLHHSGLTASCAELPAALPS 356
           A ++ SPLGC LPP+N+T F          +   A+A+ P+ H S L  + A + A   S
Sbjct: 133 AAMRVSPLGCLLPPTNLTAF----------IAEVALASSPT-HKSDLAVAGAVVVAWAVS 181

Query: 357 SEFSGSSYRAV 389
              +G +++++
Sbjct: 182 RAVNGDTWQSI 192


>tr|B5FMV8|B5FMV8_SALDC ADP-ribosylglycohydrolase family protein
           OS=Salmonella dublin (strain CT_02021853) GN=SeD_A2487
           PE=4 SV=1
          Length = 334

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +3

Query: 177 AKVKFSPLGCFLPPSNVTIFGALDRALHYSLVMHAMAAVPSLHHSGLTASCAELPAALPS 356
           A ++ SPLGC LPP+N+T F          +   A+A+ P+ H S L  + A + A   S
Sbjct: 133 AAMRVSPLGCLLPPTNLTAF----------IAEVALASSPT-HKSDLAVAGAVVVAWAVS 181

Query: 357 SEFSGSSYRAV 389
              +G +++++
Sbjct: 182 RAVNGDTWQSI 192


>tr|B5EXY2|B5EXY2_SALA4 ADP-ribosylglycohydrolase family protein
           OS=Salmonella agona (strain SL483) GN=SeAg_B2286 PE=4
           SV=1
          Length = 334

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +3

Query: 177 AKVKFSPLGCFLPPSNVTIFGALDRALHYSLVMHAMAAVPSLHHSGLTASCAELPAALPS 356
           A ++ SPLGC LPP+N+T F          +   A+A+ P+ H S L  + A + A   S
Sbjct: 133 AAMRVSPLGCLLPPTNLTAF----------IAEVALASSPT-HKSDLAVAGAVVVAWAVS 181

Query: 357 SEFSGSSYRAV 389
              +G +++++
Sbjct: 182 RAVNGDTWQSI 192


>tr|B5BF40|B5BF40_SALPK Putative hydrolase OS=Salmonella paratyphi A
           (strain AKU_12601) GN=SSPA0668 PE=4 SV=1
          Length = 334

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +3

Query: 177 AKVKFSPLGCFLPPSNVTIFGALDRALHYSLVMHAMAAVPSLHHSGLTASCAELPAALPS 356
           A ++ SPLGC LPP+N+T F          +   A+A+ P+ H S L  + A + A   S
Sbjct: 133 AAMRVSPLGCLLPPTNLTAF----------IAEVALASSPT-HKSDLAVAGAVVVAWAVS 181

Query: 357 SEFSGSSYRAV 389
              +G +++++
Sbjct: 182 RAVNGDTWQSI 192


>tr|B4TNJ9|B4TNJ9_SALSV ADP-ribosylglycohydrolase family protein
           OS=Salmonella schwarzengrund (strain CVM19633)
           GN=SeSA_A2379 PE=4 SV=1
          Length = 334

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +3

Query: 177 AKVKFSPLGCFLPPSNVTIFGALDRALHYSLVMHAMAAVPSLHHSGLTASCAELPAALPS 356
           A ++ SPLGC LPP+N+T F          +   A+A+ P+ H S L  + A + A   S
Sbjct: 133 AAMRVSPLGCLLPPTNLTAF----------IAEVALASSPT-HKSDLAVAGAVVVAWAVS 181

Query: 357 SEFSGSSYRAV 389
              +G +++++
Sbjct: 182 RAVNGDTWQSI 192