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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950510
Clone id TST38A01NGRL0008_N14
Library
Length 657
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_N14. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CAGTGAAGGGACTTCTCATTCCCAGATCTCGGACTTCGGAGCTTGCATGGTGTCTCGAGC
TTCAAAGCGTGGCTGCCGCTGTTCTTGAGCTTCTCCAGAGGTCGGCTCCTCCTTCAAGGA
TCAAAAGTACCCGTGAACTTACAAAAATGAGCATAGGCTAGATCGGCATTTCGTTGTCTG
AACGCGCGTTTTCCCAACCGTCACAGTAGCTCTTTACGGAAACTATCACAAGATGCCGCG
CCGTCCAGCAAATGTGACGCCCAGACGGCTTGCAGAGTCTGGCATAGCAGATTCATTTAG
CTCTGTGGCTGCTCCTTTGAAGTCAAGGACATCACCTTTGGTCTCTGTATGTCTAGTGGT
ACTGGGCATCATCATACTACTGGCCTATTCATTTTCTAACTCCAATGCAGGTAAATTTGC
AAGGGAGGGATCAACACTTGAAGGCTTCTCAATAAGCTTTGAGGATGAAAAAGAGGAGTT
TGCTTCTCGGCCAGAGTGTAGAACAGCTGTGTGCCAAGTGCTCCCTTATCTAAAGAGAAT
ATATGGAGAAACTATGAGTCATGTGCTTCATATCGGGCCTTCTGCTTGTGGTGTGGTTCT
GAAGCTTTTAAAGGAAGAAAAGCTTGAAGCATGGGGCATCTTGCCCTTTGATCCCAG
■■Homology search results ■■ -
sp_hit_id Q9M2Y6
Definition sp|Q9M2Y6|Y3972_ARATH Uncharacterized protein At3g49720 OS=Arabidopsis thaliana
Align length 141
Score (bit) 54.3
E-value 6.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950510|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_N14, 5'
         (657 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9M2Y6|Y3972_ARATH Uncharacterized protein At3g49720 OS=Arabi...    54   6e-07
sp|P76369|YEEY_ECOLI Uncharacterized HTH-type transcriptional re...    32   3.8  
sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus ...    31   6.6  

>sp|Q9M2Y6|Y3972_ARATH Uncharacterized protein At3g49720
           OS=Arabidopsis thaliana GN=At3g49720 PE=1 SV=1
          Length = 261

 Score = 54.3 bits (129), Expect = 6e-07
 Identities = 42/141 (29%), Positives = 56/141 (39%), Gaps = 1/141 (0%)
 Frame = +2

Query: 233 MPRRPANVTPRRLAESGIADSFSSVAA-PLKSRTSPXXXXXXXXXXXXXXXAYSFSNSNA 409
           M RR    T RR+ + G   SF    A   KSR+SP                Y++S    
Sbjct: 1   MARRQVGST-RRVGDGG---SFPFAGALHSKSRSSPLLSICLVLVGACLLIGYAYSGPGI 56

Query: 410 GKFAREGSTLEGFSISFEDEKEEFASRPECRTAVCQVLPYLKRIYGETMSHVLHIGPSAC 589
            K  +E S + G                 C   V + +P LK+ YG+ M  VLH+GP  C
Sbjct: 57  FKSIKEVSKVTGDY--------------SCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTC 102

Query: 590 GVVXXXXXXXXXXAWGILPFD 652
            VV          AWG+ P+D
Sbjct: 103 SVVSSLLKEEETEAWGVEPYD 123


>sp|P76369|YEEY_ECOLI Uncharacterized HTH-type transcriptional
           regulator yeeY OS=Escherichia coli (strain K12) GN=yeeY
           PE=4 SV=2
          Length = 309

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 322 LQRSSHRAK*ICYARLCKPSGRHICWTARHLVIVSVKSYCDGWEN 188
           L RS HRAK     ++    GR +  T R L   ++K + +GWEN
Sbjct: 50  LDRSGHRAKFTRTGKMLLEKGREVLHTVRELEKQAIKLH-EGWEN 93


>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus
           musculus GN=March1 PE=2 SV=2
          Length = 289

 Score = 30.8 bits (68), Expect = 6.6
 Identities = 18/34 (52%), Positives = 21/34 (61%)
 Frame = -1

Query: 366 PSTTRHTETKGDVLDFKGAATELNESAMPDSASR 265
           P+TTR  ET GDV D    +T LNE +   SASR
Sbjct: 16  PNTTRTPETSGDVADASQTST-LNEKSPGRSASR 48
tr_hit_id B7FIN6
Definition tr|B7FIN6|B7FIN6_MEDTR Putative uncharacterized protein (Fragment) OS=Medicago truncatula
Align length 141
Score (bit) 64.3
E-value 6.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950510|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_N14, 5'
         (657 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7FIN6|B7FIN6_MEDTR Putative uncharacterized protein (Fragmen...    64   6e-09
tr|A7NUD5|A7NUD5_VITVI Chromosome chr18 scaffold_1, whole genome...    63   2e-08
tr|B6TEL8|B6TEL8_MAIZE Putative uncharacterized protein OS=Zea m...    62   3e-08
tr|B4FPS6|B4FPS6_MAIZE Putative uncharacterized protein OS=Zea m...    62   4e-08
tr|A7QH00|A7QH00_VITVI Chromosome chr3 scaffold_95, whole genome...    62   4e-08
tr|A9PBS0|A9PBS0_POPTR Putative uncharacterized protein OS=Popul...    61   7e-08
tr|B6T448|B6T448_MAIZE Putative uncharacterized protein OS=Zea m...    60   2e-07
tr|Q9FU73|Q9FU73_ORYSJ cDNA clone:J033069B21, full insert sequen...    59   2e-07
tr|B8AD80|B8AD80_ORYSI Putative uncharacterized protein OS=Oryza...    59   2e-07
tr|A7R1W2|A7R1W2_VITVI Chromosome chr7 scaffold_382, whole genom...    59   2e-07
tr|A2ZP56|A2ZP56_ORYSJ Putative uncharacterized protein OS=Oryza...    58   6e-07
tr|Q9FH88|Q9FH88_ARATH Emb|CAB66910.1 OS=Arabidopsis thaliana PE...    57   8e-07
tr|Q8LAU7|Q8LAU7_ARATH Putative uncharacterized protein OS=Arabi...    57   8e-07
tr|Q0WPN7|Q0WPN7_ARATH Putative uncharacterized protein At5g6581...    57   8e-07
tr|A5BL67|A5BL67_VITVI Putative uncharacterized protein OS=Vitis...    57   8e-07
tr|A9PCB1|A9PCB1_POPTR Putative uncharacterized protein OS=Popul...    57   1e-06
tr|A9SEK3|A9SEK3_PHYPA Predicted protein (Fragment) OS=Physcomit...    54   8e-06
tr|A7R677|A7R677_VITVI Chromosome undetermined scaffold_1179, wh...    51   5e-05
tr|B7FIL1|B7FIL1_MEDTR Putative uncharacterized protein OS=Medic...    49   4e-04
tr|B7FI93|B7FI93_MEDTR Putative uncharacterized protein OS=Medic...    49   4e-04
tr|A5B1Q6|A5B1Q6_VITVI Putative uncharacterized protein OS=Vitis...    34   9.0  

>tr|B7FIN6|B7FIN6_MEDTR Putative uncharacterized protein (Fragment)
           OS=Medicago truncatula PE=2 SV=1
          Length = 192

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 45/141 (31%), Positives = 63/141 (44%), Gaps = 1/141 (0%)
 Frame = +2

Query: 233 MPRRPANVTPRRLAESGIADSFSSVAAPLKSRTSPXXXXXXXXXXXXXXXAYSFSNSN-A 409
           M RRP N + RRL + G     +S+ +  KS+ SP                Y +S+S  A
Sbjct: 1   MSRRPVNPS-RRLGDGGSIPFVASIQS--KSQNSPLISIGLVIVGAILLIGYCYSSSGGA 57

Query: 410 GKFAREGSTLEGFSISFEDEKEEFASRPECRTAVCQVLPYLKRIYGETMSHVLHIGPSAC 589
               ++ S LEG S               C   + Q LP LK+ YG++M  VLH+GP +C
Sbjct: 58  SNDIKDLSKLEGAS--------------SCTLELLQALPILKKAYGDSMHKVLHVGPDSC 103

Query: 590 GVVXXXXXXXXXXAWGILPFD 652
            VV          AWGI P++
Sbjct: 104 SVVSSLLVEDDTEAWGIEPYE 124


>tr|A7NUD5|A7NUD5_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015004001
           PE=4 SV=1
          Length = 261

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 44/140 (31%), Positives = 60/140 (42%)
 Frame = +2

Query: 233 MPRRPANVTPRRLAESGIADSFSSVAAPLKSRTSPXXXXXXXXXXXXXXXAYSFSNSNAG 412
           M R+P N + RR A SG      S+ +  KSR SP                YS+S S   
Sbjct: 1   MSRKPVNPS-RRFAGSGTLPFIGSLHS--KSRASPFLSIGLLIMGAMLLIGYSYSGS--- 54

Query: 413 KFAREGSTLEGFSISFEDEKEEFASRPECRTAVCQVLPYLKRIYGETMSHVLHIGPSACG 592
                     GF  S E     +A    C   V   +P+LK+ YG++M  VLH+GP +C 
Sbjct: 55  ----------GF-FSLEVSYPIYAGDFSCTAEVHWAIPFLKKAYGDSMHKVLHVGPDSCS 103

Query: 593 VVXXXXXXXXXXAWGILPFD 652
           +V          AWG+ P+D
Sbjct: 104 IVSKLLKEEETEAWGVEPYD 123


>tr|B6TEL8|B6TEL8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 266

 Score = 62.0 bits (149), Expect = 3e-08
 Identities = 44/140 (31%), Positives = 64/140 (45%)
 Frame = +2

Query: 233 MPRRPANVTPRRLAESGIADSFSSVAAPLKSRTSPXXXXXXXXXXXXXXXAYSFSNSNAG 412
           M RR  N + RR+A+ G+  +   +  P KSR+ P               AY   NS +G
Sbjct: 1   MSRRSLNPS-RRVADGGLP-TVGGLFHP-KSRSPPVLTIALVVLGVILLVAYF--NSGSG 55

Query: 413 KFAREGSTLEGFSISFEDEKEEFASRPECRTAVCQVLPYLKRIYGETMSHVLHIGPSACG 592
           +       L+   ++    +    S   C + V +VLPYLK+ YG  M  VLH+GP +C 
Sbjct: 56  R-------LKILGVTVTSRESVTRSEGSCTSEVMRVLPYLKKAYGNAMQKVLHVGPDSCT 108

Query: 593 VVXXXXXXXXXXAWGILPFD 652
           VV          AWG+ P+D
Sbjct: 109 VVSNLLKEGKVEAWGVEPYD 128


>tr|B4FPS6|B4FPS6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 260

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 45/140 (32%), Positives = 60/140 (42%)
 Frame = +2

Query: 233 MPRRPANVTPRRLAESGIADSFSSVAAPLKSRTSPXXXXXXXXXXXXXXXAYSFSNSNAG 412
           M RR  N + RR+A+ G+  +   +  P KSR+ P               AY  S S   
Sbjct: 1   MSRRSLNPS-RRVADGGLP-TVGGLFHP-KSRSPPVLTIALVVLGVILLVAYFNSGSGVT 57

Query: 413 KFAREGSTLEGFSISFEDEKEEFASRPECRTAVCQVLPYLKRIYGETMSHVLHIGPSACG 592
             +RE  T                S   C + V +VLPYLK+ YG  M  VLH+GP +C 
Sbjct: 58  VTSRESVT---------------RSEGSCTSEVMRVLPYLKKAYGNAMQKVLHVGPDSCT 102

Query: 593 VVXXXXXXXXXXAWGILPFD 652
           VV          AWG+ P+D
Sbjct: 103 VVSNLLKEGKVEAWGVEPYD 122


>tr|A7QH00|A7QH00_VITVI Chromosome chr3 scaffold_95, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00038561001
           PE=4 SV=1
          Length = 227

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 41/140 (29%), Positives = 61/140 (43%)
 Frame = +2

Query: 233 MPRRPANVTPRRLAESGIADSFSSVAAPLKSRTSPXXXXXXXXXXXXXXXAYSFSNSNAG 412
           M RRP   + RR A+ G      S+ +  +SR+SP                Y++S S   
Sbjct: 1   MSRRPVG-SARRFADGGGIPFMGSLHS--RSRSSPLLSIGLVVLGAILLIVYAYSGS--- 54

Query: 413 KFAREGSTLEGFSISFEDEKEEFASRPECRTAVCQVLPYLKRIYGETMSHVLHIGPSACG 592
                     G SIS ++   +      C   V + LP LK++YG++M  +LH+GP  C 
Sbjct: 55  ----------GGSISDKEALSKVEGGVSCTLEVQRALPILKKVYGDSMHKILHVGPYTCS 104

Query: 593 VVXXXXXXXXXXAWGILPFD 652
           VV          AWG+ P+D
Sbjct: 105 VVSKLLKEEDTEAWGVEPYD 124


>tr|A9PBS0|A9PBS0_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 262

 Score = 60.8 bits (146), Expect = 7e-08
 Identities = 42/140 (30%), Positives = 58/140 (41%)
 Frame = +2

Query: 233 MPRRPANVTPRRLAESGIADSFSSVAAPLKSRTSPXXXXXXXXXXXXXXXAYSFSNSNAG 412
           M RRP N   RRLA+ G      S+ +  KSR+SP                Y +S S   
Sbjct: 1   MSRRPGNPA-RRLADGGSLPFAGSMHS--KSRSSPLLSIGLVVVGAILLIGYCYSGSGGH 57

Query: 413 KFAREGSTLEGFSISFEDEKEEFASRPECRTAVCQVLPYLKRIYGETMSHVLHIGPSACG 592
              RE  +     +S             C   V + +P+LK+ YG++M  VLH+GP  C 
Sbjct: 58  ITNREALSKTEGGVS-------------CTLEVQRAIPFLKKAYGDSMRKVLHVGPDTCS 104

Query: 593 VVXXXXXXXXXXAWGILPFD 652
            V          AWG+ P+D
Sbjct: 105 AVSSLLKEEDTEAWGVEPYD 124


>tr|B6T448|B6T448_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 260

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 44/140 (31%), Positives = 59/140 (42%)
 Frame = +2

Query: 233 MPRRPANVTPRRLAESGIADSFSSVAAPLKSRTSPXXXXXXXXXXXXXXXAYSFSNSNAG 412
           M RR  N + RR+A+ G+  SF     P KSR+ P               AY  S+    
Sbjct: 1   MSRRSVNPS-RRVADGGLP-SFGGPFHP-KSRSPPVLTIALVVLGVIFLIAYFNSSPGVT 57

Query: 413 KFAREGSTLEGFSISFEDEKEEFASRPECRTAVCQVLPYLKRIYGETMSHVLHIGPSACG 592
             ++E  T                S   C + V + LPYLK+ YG  M  VLH+GP +C 
Sbjct: 58  VTSKETVT---------------RSEGSCTSEVMRALPYLKKAYGNAMQKVLHVGPDSCT 102

Query: 593 VVXXXXXXXXXXAWGILPFD 652
           VV          AWG+ P+D
Sbjct: 103 VVSNLLKEGKVEAWGVEPYD 122


>tr|Q9FU73|Q9FU73_ORYSJ cDNA clone:J033069B21, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0019D06.41 PE=2 SV=1
          Length = 258

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 44/140 (31%), Positives = 58/140 (41%)
 Frame = +2

Query: 233 MPRRPANVTPRRLAESGIADSFSSVAAPLKSRTSPXXXXXXXXXXXXXXXAYSFSNSNAG 412
           M RR  N + RR+A+ G+  S   +  P KSR+ P               AY  S S   
Sbjct: 1   MSRRSVNPS-RRVADGGLP-SVGGLLHP-KSRSPPVLTIALVVLGVIILIAYFNSGSGVT 57

Query: 413 KFAREGSTLEGFSISFEDEKEEFASRPECRTAVCQVLPYLKRIYGETMSHVLHIGPSACG 592
             +RE  +                S   C   V Q LPYLK+ YG  +  VLH+GP +C 
Sbjct: 58  VTSREAVS---------------RSEGSCTPEVMQALPYLKKAYGNELHKVLHVGPDSCT 102

Query: 593 VVXXXXXXXXXXAWGILPFD 652
           VV          AWG+ P+D
Sbjct: 103 VVSNLLKEGKVEAWGVEPYD 122


>tr|B8AD80|B8AD80_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00357 PE=4 SV=1
          Length = 258

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 44/140 (31%), Positives = 58/140 (41%)
 Frame = +2

Query: 233 MPRRPANVTPRRLAESGIADSFSSVAAPLKSRTSPXXXXXXXXXXXXXXXAYSFSNSNAG 412
           M RR  N + RR+A+ G+  S   +  P KSR+ P               AY  S S   
Sbjct: 1   MSRRSVNPS-RRVADGGLP-SVGGLLHP-KSRSPPVLTIALVVLGVIILIAYFNSGSGVT 57

Query: 413 KFAREGSTLEGFSISFEDEKEEFASRPECRTAVCQVLPYLKRIYGETMSHVLHIGPSACG 592
             +RE  +                S   C   V Q LPYLK+ YG  +  VLH+GP +C 
Sbjct: 58  VTSREAVS---------------RSEGSCTPEVMQALPYLKKAYGNELHKVLHVGPDSCT 102

Query: 593 VVXXXXXXXXXXAWGILPFD 652
           VV          AWG+ P+D
Sbjct: 103 VVSNLLKEGKVEAWGVEPYD 122


>tr|A7R1W2|A7R1W2_VITVI Chromosome chr7 scaffold_382, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00012460001
           PE=4 SV=1
          Length = 208

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 44/140 (31%), Positives = 63/140 (45%)
 Frame = +2

Query: 233 MPRRPANVTPRRLAESGIADSFSSVAAPLKSRTSPXXXXXXXXXXXXXXXAYSFSNSNAG 412
           M RR  N + RR  +SG      ++ +  KSR+SP               AYS+S S  G
Sbjct: 1   MSRRQVNPS-RRFVDSGSIPFAGALHS--KSRSSPLLSIGLVLLGAFLLVAYSYSGS--G 55

Query: 413 KFAREGSTLEGFSISFEDEKEEFASRPECRTAVCQVLPYLKRIYGETMSHVLHIGPSACG 592
            F        G   +F   + +F+    C   V + +P LK+ YG++M  VLH+GP  C 
Sbjct: 56  LFG-------GDKEAFSKVEGDFS----CTLEVQRAIPILKKAYGDSMRKVLHVGPDTCS 104

Query: 593 VVXXXXXXXXXXAWGILPFD 652
           VV          AWG+ P+D
Sbjct: 105 VVSKLLKEEETEAWGVEPYD 124