DK950521 |
Clone id |
TST38A01NGRL0008_O02 |
Library |
TST38 |
Length |
676 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_O02. 5' end sequence. |
Accession |
DK950521 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL1293Contig1 |
Sequence |
GCAGCAATTTGGACTTGCTGGTAGCAAACAGGCCAGGTTTGGATCTGTGCTTCATGGATT CAGCAAAGACACCCTCGCCATGGCATGGGGTGTCGACGAGCAAACAATCCAGTCTCTCCT TGAGCGCCAAAATGAAGCGGGCATTGTGAAAGCGAAGCAAAAGATCCACTTTCCACAGAT ACCCGAGCGGCGCAGCCGGAGAGAGGAACAGGAGGAAGAGGAAGAGAGAAACGCCTTCAA GGAAACTTCAGGCCCTTCCTACTTTGAGGAGCTCAAGTACAGCATAAGGGATGAGCTTCC GGACTTCTACGTAAAGAACGGCGGTGCTCTCAATAGAGTCAATTGCCATAAGCTGCCCGC TTTGCATCAGATTGGATTTAGCGCGGTCAAGGTGTCCTTGGAGAGGGTAATTTTCAACTT TGAACTTTTTTCTTATTCTTATTGCTCCATTAATTTAAATTAGGACAGCCATTGATTACT TAAAAGATTAAGATGATGATTAATAAAGGTTAAAAGAAACTTTTTCTTATGCTTGCTTCA TTAATTTAAATTAGGACAGCCATTGATTACTTAAAGATTAAGATGATGATTAATAAAGGT TAAAATAGTCTGATGTTGGATTCTGGCTTCCATCAGAATGCAATGATGGCCCCTTCTTTC GTGCGCAATGGGCACC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
A1RIZ0 |
Definition |
sp|A1RIZ0|RSMF_SHESW Ribosomal RNA small subunit methyltransferase F OS=Shewanella sp. (strain W3-18-1) |
Align length |
54 |
Score (bit) |
32.3 |
E-value |
2.4 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q39772 |
Definition |
tr|Q39772|Q39772_GINBI Ginnacin OS=Ginkgo biloba |
Align length |
127 |
Score (bit) |
54.7 |
E-value |
5.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950521|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0008_O02, 5' (676 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q39772|Q39772_GINBI Ginnacin OS=Ginkgo biloba PE=2 SV=1 55 5e-06 tr|Q39770|Q39770_GINBI Legumin; 11S-globulin OS=Ginkgo biloba PE... 53 2e-05 tr|Q39484|Q39484_CALDE Legumin (Fragment) OS=Calocedrus decurren... 49 3e-04 tr|Q39521|Q39521_CRYJA Legumin OS=Cryptomeria japonica GN=Leg31 ... 43 0.016 tr|O04691|O04691_METGY Legumin OS=Metasequoia glyptostroboides G... 43 0.016 tr|Q40933|Q40933_PSEMZ Legumin-like storage protein OS=Pseudotsu... 43 0.021 tr|Q39483|Q39483_CALDE Legumin (Fragment) OS=Calocedrus decurren... 40 0.10 tr|Q41017|Q41017_PINST Pine globulin-1 OS=Pinus strobus PE=2 SV=1 40 0.14 tr|Q94CS6|Q94CS6_ORYSJ cDNA clone:006-204-D01, full insert seque... 39 0.23 tr|Q40870|Q40870_PICGL Legumin-like storage protein OS=Picea gla... 39 0.23 tr|B7P073|B7P073_PISVE Pis v 2.0101 allergen11S globulin precuso... 39 0.23 tr|A7PYN6|A7PYN6_VITVI Chromosome chr12 scaffold_38, whole genom... 39 0.23 tr|A5ARE0|A5ARE0_VITVI Putative uncharacterized protein (Chromos... 39 0.23 tr|A3A224|A3A224_ORYSJ Putative uncharacterized protein OS=Oryza... 39 0.23 tr|A2WZN8|A2WZN8_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.23 tr|Q9LQQ3|Q9LQQ3_ARATH F24B9.13 protein (At1g07750/F24B9_13) (Pu... 39 0.30 tr|Q8LA49|Q8LA49_ARATH Globulin-like protein OS=Arabidopsis thal... 39 0.30 tr|Q9SIA7|Q9SIA7_ARATH Legumin-like protein (Cupin family protei... 39 0.39 tr|Q84ND2|Q84ND2_BEREX 11S globulin OS=Bertholletia excelsa PE=2... 39 0.39 tr|A7PXI0|A7PXI0_VITVI Chromosome chr12 scaffold_36, whole genom... 39 0.39 tr|Q40348|Q40348_MAGSL Legumin OS=Magnolia salicifolia PE=2 SV=1 38 0.52 tr|A7PYN2|A7PYN2_VITVI Chromosome chr12 scaffold_38, whole genom... 38 0.52 tr|A7PYN1|A7PYN1_VITVI Chromosome chr12 scaffold_38, whole genom... 38 0.52 tr|Q40347|Q40347_MAGSL Globulin OS=Magnolia salicifolia PE=2 SV=1 38 0.67 tr|Q39722|Q39722_EPHGE Legumin; 11S globulin OS=Ephedra gerardia... 38 0.67 tr|Q41018|Q41018_PINST Pine globulin-2 OS=Pinus strobus PE=2 SV=1 37 0.88 tr|A7PYN3|A7PYN3_VITVI Chromosome chr12 scaffold_38, whole genom... 37 0.88 tr|A7PYN0|A7PYN0_VITVI Chromosome chr12 scaffold_38, whole genom... 37 0.88 tr|A7PYM7|A7PYM7_VITVI Chromosome chr12 scaffold_38, whole genom... 37 0.88 tr|A5B7S5|A5B7S5_VITVI Putative uncharacterized protein OS=Vitis... 37 0.88
>tr|Q39772|Q39772_GINBI Ginnacin OS=Ginkgo biloba PE=2 SV=1 Length = 460
Score = 54.7 bits (130), Expect = 5e-06 Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 7/127 (5%) Frame = +2
Query: 44 SVLHGFSKDTLAMAWGVDEQTIQSLLERQNEAGIVKAKQKIHFPQIPXXXXXXXXXXXXX 223 ++L GF DTLA A G+ + T + + + Q + IVK ++ + P P Sbjct: 214 NILQGFDTDTLAEAMGISQDTARRIQQNQKKGLIVKVERGLRMPGPPSDDYERE------ 267
Query: 224 XXNAFKETSGPSYFEELKYSIR-------DELPDFYVKNGGALNRVNCHKLPALHQIGFS 382 +E G + EEL S+R E D YV+NGG LN VN KLPAL + Sbjct: 268 -----REREG-NNVEELYCSMRLRHNADDSEDADVYVRNGGRLNTVNRLKLPALRSLRLG 321
Query: 383 AVKVSLE 403 A + L+ Sbjct: 322 AERGILQ 328
>tr|Q39770|Q39770_GINBI Legumin; 11S-globulin OS=Ginkgo biloba PE=3 SV=1 Length = 460
Score = 53.1 bits (126), Expect = 2e-05 Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 7/127 (5%) Frame = +2
Query: 44 SVLHGFSKDTLAMAWGVDEQTIQSLLERQNEAGIVKAKQKIHFPQIPXXXXXXXXXXXXX 223 ++L GF DTLA A G+ + T + + + Q + IVK ++ + P P Sbjct: 214 NILQGFDTDTLAEAMGISQDTARRIQQNQKKGLIVKVERGLRMPGPPSDDYERE------ 267
Query: 224 XXNAFKETSGPSYFEELKYSIR-------DELPDFYVKNGGALNRVNCHKLPALHQIGFS 382 +E G + EE S+R E D YV+NGG LN VN KLPAL + Sbjct: 268 -----REREG-NNVEEFYCSMRLRHNADDSEDADVYVRNGGRLNTVNRLKLPALRSLRLG 321
Query: 383 AVKVSLE 403 A + L+ Sbjct: 322 AERGILQ 328
>tr|Q39484|Q39484_CALDE Legumin (Fragment) OS=Calocedrus decurrens GN=Leg3 PE=2 SV=1 Length = 508
Score = 48.9 bits (115), Expect = 3e-04 Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 23/151 (15%) Frame = +2
Query: 2 QQFGLAGSKQARF------------GSVLHGFSKDTLAMAWGVDEQTIQSLLERQNEAGI 145 +QF LAGS R G++L GF +TLA AWGV+ T++ + E G+ Sbjct: 220 RQFYLAGSPATRERRERLGEGRKLGGNMLAGFDPNTLAEAWGVERDTVRRIQENNQGRGL 279
Query: 146 V----KAKQKIHFPQIPXXXXXXXXXXXXXXXNAFKETSGPSYFEELKYSIR-------D 292 + + +Q+ + P ++ PS ++L ++R Sbjct: 280 IVRVNQPRQQRRDHENPPISFWDSNVITGGEEEEERDGFNPSGLQQLICNMRLRHNADNQ 339
Query: 293 ELPDFYVKNGGALNRVNCHKLPALHQIGFSA 385 E + ++++GG LN VN KL AL I +A Sbjct: 340 EDAEVFIRDGGRLNTVNRFKLNALTHINLAA 370
>tr|Q39521|Q39521_CRYJA Legumin OS=Cryptomeria japonica GN=Leg31 PE=2 SV=1 Length = 510
Score = 43.1 bits (100), Expect = 0.016 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 7/129 (5%) Frame = +2
Query: 20 GSKQARFGSVLHGFSKDTLAMAWGVDEQTIQSLLERQNEAGIVKAKQKIHFPQIPXXXXX 199 G Q G+VL GF + LA A GV Q + + E E+G++ + P+ Sbjct: 246 GEGQRYGGNVLAGFDPNMLAEALGVRRQVVIDIQENNRESGLIVRVNEPLRPRPGRGAPQ 305
Query: 200 XXXXXXXXXXNAFKETSGPSYFEELKYSI-------RDELPDFYVKNGGALNRVNCHKLP 358 +E P + ++ R + D +V++GG LN VN KLP Sbjct: 306 FFNTFVEDSEEDEREGVNPGGLHQFYCNMRLRHNADRPDDADVFVRDGGRLNTVNRFKLP 365
Query: 359 ALHQIGFSA 385 AL + +A Sbjct: 366 ALTHLNLAA 374
>tr|O04691|O04691_METGY Legumin OS=Metasequoia glyptostroboides GN=Leg4 PE=2 SV=1 Length = 500
Score = 43.1 bits (100), Expect = 0.016 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 7/129 (5%) Frame = +2
Query: 20 GSKQARFGSVLHGFSKDTLAMAWGVDEQTIQSLLERQNEAGIVKAKQKIHFPQIPXXXXX 199 G +Q G++L GF + LA A GV Q + + E E+G++ + PQ Sbjct: 237 GEEQRYGGNILSGFDSNMLAEALGVRRQVVVDVQENNRESGLIVRLDEPLRPQPGRGAPL 296
Query: 200 XXXXXXXXXXNAFKETSGPSYFEELKYSI-------RDELPDFYVKNGGALNRVNCHKLP 358 +E P + ++ R + D +V++GG LN VN KL Sbjct: 297 FFNTFAEDSEEDEREGLNPGGLHQFYCNMRLRHNADRPDDADIFVRDGGRLNTVNRFKLH 356
Query: 359 ALHQIGFSA 385 AL + +A Sbjct: 357 ALTHLNLAA 365
>tr|Q40933|Q40933_PSEMZ Legumin-like storage protein OS=Pseudotsuga menziesii PE=2 SV=1 Length = 507
Score = 42.7 bits (99), Expect = 0.021 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 11/140 (7%) Frame = +2
Query: 20 GSKQARFGSVLHGFSKDTLAMAWGVDEQTIQSLLERQNEAGIVKAKQ----KIHFPQIPX 187 G ++ G++L GFS +LA GV+ +T + L + Q + +Q + P Sbjct: 233 GERRDIGGNILAGFSTRSLAETLGVELETARKLQQNQRSRLFARVEQGRRLSLPGPARSG 292
Query: 188 XXXXXXXXXXXXXXNAFKETSGPSYFEELKYSIR-------DELPDFYVKNGGALNRVNC 346 N+F + + EE+ ++R E D YV++GG +N VN Sbjct: 293 QRDNEMMQQLHETHNSFANEN-ENDVEEVVCALRVKHNADNPEDADIYVRDGGRMNIVNR 351
Query: 347 HKLPALHQIGFSAVKVSLER 406 KLP L +G A +V L + Sbjct: 352 FKLPVLKYLGLGAERVILRQ 371
>tr|Q39483|Q39483_CALDE Legumin (Fragment) OS=Calocedrus decurrens GN=Leg2 PE=2 SV=1 Length = 498
Score = 40.4 bits (93), Expect = 0.10 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 11/134 (8%) Frame = +2
Query: 17 AGSKQARFGSVLHGFSKDTLAMAWGVDEQTIQSLLERQNEAGIVKAKQKIHFPQIPXXXX 196 AG + G+VL GF + LA A GV Q + + E E+G++ +++ P+ P Sbjct: 233 AGEGERYGGNVLAGFDANMLAEALGVRRQVVTDIQENNRESGLI---VRVNEPRRPGPGG 289
Query: 197 XXXXXXXXXXXNAFKETS----GPSYFEELKYSI-------RDELPDFYVKNGGALNRVN 343 +E P + ++ R + D +V++GG LN VN Sbjct: 290 RGAPLFSNTVAEDSEEEEREGINPGGLHQFYCNMRLRHNADRPDDADIFVRDGGRLNTVN 349
Query: 344 CHKLPALHQIGFSA 385 KL AL + +A Sbjct: 350 RFKLHALSHLNLAA 363
>tr|Q41017|Q41017_PINST Pine globulin-1 OS=Pinus strobus PE=2 SV=1 Length = 488
Score = 40.0 bits (92), Expect = 0.14 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 7/126 (5%) Frame = +2
Query: 44 SVLHGFSKDTLAMAWGVDEQTIQSLLERQNEAGIVKAKQKIHFPQIPXXXXXXXXXXXXX 223 ++L GF+ TLA + V+ +T + L + Q+ + ++ Sbjct: 216 NILAGFNTRTLAQSLDVELETARRLQQNQHSRFFARVERGRRLSLPAPRSRSRSRSPYAG 275
Query: 224 XXNAFKETSGPSYFEELKYSIR-------DELPDFYVKNGGALNRVNCHKLPALHQIGFS 382 + + EEL +R E D YV++GG +N VN +KLPAL +G Sbjct: 276 RQRQWGREDSENGVEELVCPMRVKHNADNPEDADVYVRDGGRMNIVNRYKLPALKYLGLG 335
Query: 383 AVKVSL 400 A +V L Sbjct: 336 AERVIL 341
>tr|Q94CS6|Q94CS6_ORYSJ cDNA clone:006-204-D01, full insert sequence OS=Oryza sativa subsp. japonica GN=P0459B04.33 PE=2 SV=1 Length = 377
Score = 39.3 bits (90), Expect = 0.23 Identities = 34/141 (24%), Positives = 55/141 (39%) Frame = +2
Query: 47 VLHGFSKDTLAMAWGVDEQTIQSLLERQNEAGIVKAKQKIHFPQIPXXXXXXXXXXXXXX 226 + GFS + +A AW + + SL+ Q AGIVK K P+ Sbjct: 154 IFTGFSTEFVARAWDLPQDAAASLVSTQPGAGIVKLKDGFRMPE---------------- 197
Query: 227 XNAFKETSGPSYFEELKYSIRDELPDFYVKNGGALNRVNCHKLPALHQIGFSAVKVSLER 406 K+ G + + + D +KNGG + +N LP + ++G A V ++ Sbjct: 198 -GCDKDREG------MVLNCLEAPLDVDIKNGGRVVVLNTQNLPLVKEVGLGADLVRID- 249
Query: 407 VIFNFELFSYSYCSINLN*DS 469 +S CS + DS Sbjct: 250 --------GHSMCSPGFSCDS 262
>tr|Q40870|Q40870_PICGL Legumin-like storage protein OS=Picea glauca PE=2 SV=1 Length = 509
Score = 39.3 bits (90), Expect = 0.23 Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 14/133 (10%) Frame = +2
Query: 44 SVLHGFSKDTLAMAWGVDEQTIQSLLERQNEAGIVKAK--QKIHFP-----QIPXXXXXX 202 ++ GFS TLA GV+ +T + L E Q + + Q++ P Sbjct: 233 NIFAGFSTRTLAETLGVEIETARKLQENQQSRLFARVERGQRLSLPGPRSRSRSPYERET 292
Query: 203 XXXXXXXXXNAFKETSGPSYFEELKYSIR-------DELPDFYVKNGGALNRVNCHKLPA 361 + + + EEL +R E D YV++GG LNRVN KLP Sbjct: 293 ERDDVAGGLQGYYSSGDENGVEELVCPLRVKHNADNPEDADVYVRDGGRLNRVNRFKLPV 352
Query: 362 LHQIGFSAVKVSL 400 L + A +V L Sbjct: 353 LKYLRLGAERVVL 365
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