DK950526 |
Clone id |
TST38A01NGRL0008_O07 |
Library |
TST38 |
Length |
643 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_O07. 5' end sequence. |
Accession |
DK950526 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL385Contig1 |
Sequence |
CCTCTTTCGATGCGGGCCTTTGAGTGTATCGTCTGCAAACGCGCATCGTCAGGTGACTGC TAGGGCTTTTTCACGTCCTTCCGCTCTGCGATCGGCCTCTCTTCTTCTCTCCGAGCGCCA GTTTTCAGATCGCACCTCGTCTTTCATAAGTTTTGGATTCAGTGGTGACATTCTGTCTTT GAGAACGGATTTTGGCAAGGTCCACCCTTTTGGCTGCCATGTCGGCGGTGGTTTGTGGCA AGCGGTCTCTCTTTGACGAAATTCACCCCCCTATTCCAAAGAGGCTTCGCTGTGGAGGAG GAACTTCTCCTGTTCGATTTGCTTCCTTGAGGAGTGGTTCTCCTGTGGGCTCTTGTGAAG CATGTTCACCTTCTCTATCTGACTTGTCAGACCAACTTTCCCATCTGAGAACCCTTTTTC CTGAGATGGATGGGCAGCTAATTGAAAAGGTCTTGGAGTCTAGTGGAAACAACCTTGACT CTGCAATACGAAGTCTCAATGAGCTTCGGCTTAGCTCTGATGTCGTGGCAAATGCCTTGA ATTTCTCCAATGACAATAGTGCACCAAACCTGACTCTTGGGCAGGAAGGTGTGGCAAATC AATCAGCTGTTTTGAATGCCGTGGAGGTTGATAAAGCGAATCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P62501 |
Definition |
sp|P62501|T22D1_RAT TSC22 domain family protein 1 OS=Rattus norvegicus |
Align length |
61 |
Score (bit) |
34.7 |
E-value |
0.44 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NV65 |
Definition |
tr|A9NV65|A9NV65_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
103 |
Score (bit) |
90.9 |
E-value |
6.0e-17 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950526|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0008_O07, 5' (643 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NV65|A9NV65_PICSI Putative uncharacterized protein OS=Picea... 91 6e-17 tr|A9U3T0|A9U3T0_PHYPA Predicted protein OS=Physcomitrella paten... 87 1e-15 tr|A9T5N7|A9T5N7_PHYPA Predicted protein OS=Physcomitrella paten... 86 2e-15 tr|A7PF87|A7PF87_VITVI Chromosome chr11 scaffold_13, whole genom... 86 2e-15 tr|A9PBC1|A9PBC1_POPTR Putative uncharacterized protein OS=Popul... 86 3e-15 tr|A9PHI2|A9PHI2_POPTR Putative uncharacterized protein OS=Popul... 82 3e-14 tr|Q94K99|Q94K99_ARATH Putative uncharacterized protein At5g3244... 75 3e-12 tr|Q8H1Q3|Q8H1Q3_ARATH Putative uncharacterized protein At5g3244... 75 3e-12 tr|B3H6U1|B3H6U1_ARATH Uncharacterized protein At5g32440.2 OS=Ar... 75 3e-12 tr|B6TIC6|B6TIC6_MAIZE CUE domain containing protein OS=Zea mays... 72 4e-11 tr|B6TCB4|B6TCB4_MAIZE CUE domain containing protein OS=Zea mays... 67 7e-10 tr|B4FYB7|B4FYB7_MAIZE Putative uncharacterized protein OS=Zea m... 67 7e-10 tr|Q67WV6|Q67WV6_ORYSJ Os06g0642900 protein OS=Oryza sativa subs... 63 1e-08 tr|A3A3V8|A3A3V8_ORYSJ Putative uncharacterized protein OS=Oryza... 62 4e-08 tr|A2X1Q4|A2X1Q4_ORYSI Putative uncharacterized protein OS=Oryza... 62 4e-08 tr|B6T3P8|B6T3P8_MAIZE CUE domain containing protein OS=Zea mays... 59 3e-07 tr|B4G1V5|B4G1V5_MAIZE Putative uncharacterized protein OS=Zea m... 57 1e-06 tr|A7PNK4|A7PNK4_VITVI Chromosome chr8 scaffold_23, whole genome... 51 7e-05 tr|Q6UUK2|Q6UUK2_ORYSJ Putative uncharacterized protein (Putativ... 50 1e-04 tr|Q0E3B5|Q0E3B5_ORYSJ Os02g0184500 protein OS=Oryza sativa subs... 49 3e-04 tr|Q6H880|Q6H880_ORYSJ Putative uncharacterized protein OJ1572_F... 47 8e-04 tr|B8B0S4|B8B0S4_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.004 tr|A7QIK9|A7QIK9_VITVI Chromosome chr9 scaffold_104, whole genom... 44 0.011 tr|A5B8J1|A5B8J1_VITVI Putative uncharacterized protein OS=Vitis... 44 0.011 tr|Q0J3G0|Q0J3G0_ORYSJ Os09g0119100 protein OS=Oryza sativa subs... 38 0.46 tr|A3BW42|A3BW42_ORYSJ Putative uncharacterized protein OS=Oryza... 38 0.46 tr|A2YYJ3|A2YYJ3_ORYSI Putative uncharacterized protein OS=Oryza... 38 0.46 tr|B4G446|B4G446_DROPE GL23387 OS=Drosophila persimilis GN=GL233... 35 3.9 tr|Q6INE3|Q6INE3_XENLA MGC83221 protein OS=Xenopus laevis GN=tol... 35 5.1 tr|Q6DFR0|Q6DFR0_XENTR Toll interacting protein OS=Xenopus tropi... 35 5.1
>tr|A9NV65|A9NV65_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 289
Score = 90.9 bits (224), Expect = 6e-17 Identities = 50/103 (48%), Positives = 64/103 (62%), Gaps = 2/103 (1%) Frame = +3
Query: 219 MSAVVCGKRSLFDEIH--PPIPKRLRCGGGTSPVRFASLRSGSPVGSCEACXXXXXXXXX 392 MSA+VCGKRSLF+++H PPI KRLRC G SP+RF++ + + Sbjct: 1 MSALVCGKRSLFEDLHTPPPISKRLRCSGSNSPIRFSANSPTRSPTATDIHHQNQSTEIH 60
Query: 393 XXXXXRTLFPEMDGQLIEKVLESSGNNLDSAIRSLNELRLSSD 521 R LFP+MD Q +E VLES GN+L SAI+SLNELRL + Sbjct: 61 HLSQLRGLFPDMDEQHLEAVLESCGNDLASAIKSLNELRLGRE 103
>tr|A9U3T0|A9U3T0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_228060 PE=4 SV=1 Length = 285
Score = 86.7 bits (213), Expect = 1e-15 Identities = 54/117 (46%), Positives = 67/117 (57%), Gaps = 2/117 (1%) Frame = +3
Query: 219 MSAVVCGKRSLFDEIH--PPIPKRLRCGGGTSPVRFASLRSGSPVGSCEACXXXXXXXXX 392 MSA VCGKRSLF+++H PP KRLR G SP+ FA+ S P GS C Sbjct: 1 MSAAVCGKRSLFEDLHCSPPTSKRLRFAQGNSPLWFATATSTPPSGS-SPCFELRPEADL 59
Query: 393 XXXXXRTLFPEMDGQLIEKVLESSGNNLDSAIRSLNELRLSSDVVANALNFSNDNSA 563 LFP+M+ ++EKVL +S N+LD AI+SLN LRLSS A A +D A Sbjct: 60 LLSQLHALFPDMEEHVVEKVLGASNNDLDYAIKSLNLLRLSSSQQA-ATTLPSDQDA 115
>tr|A9T5N7|A9T5N7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_191879 PE=4 SV=1 Length = 287
Score = 85.9 bits (211), Expect = 2e-15 Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 2/102 (1%) Frame = +3
Query: 219 MSAVVCGKRSLFDEIH--PPIPKRLRCGGGTSPVRFASLRSGSPVGSCEACXXXXXXXXX 392 MSA VCGKRSLF+++ PPI KRLR G SP+ FAS S P GS + Sbjct: 1 MSAAVCGKRSLFEDLRSSPPISKRLRFAQGNSPIWFASATSSPPSGSSPS-FEPRLEAGL 59
Query: 393 XXXXXRTLFPEMDGQLIEKVLESSGNNLDSAIRSLNELRLSS 518 LFP+M+ Q +EKVLE+S N+LD AI+SLN LRL S Sbjct: 60 LLSQLHALFPDMEEQAVEKVLEASNNDLDYAIKSLNLLRLYS 101
>tr|A7PF87|A7PF87_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016953001 PE=4 SV=1 Length = 283
Score = 85.9 bits (211), Expect = 2e-15 Identities = 57/132 (43%), Positives = 73/132 (55%), Gaps = 6/132 (4%) Frame = +3
Query: 219 MSAVVCGKRSLFDEIH--PPIPKRLRCGGGTSPVRFASLRSGSPVGSCEACXXXXXXXXX 392 MSA+VCGKRS F+++ PP+ KR+RC +SPVRF+ RS + + + Sbjct: 1 MSAIVCGKRSFFEDLPTTPPVSKRIRCSS-SSPVRFSPPRS---ISASPSQSQSTASQAS 56
Query: 393 XXXXXRTLFPEMDGQLIEKVLESSGNNLDSAIRSLNELRLSSDVVANALNFSNDNSAPNL 572 R LFP+MD Q +EK LE GN+LDS I+SLNELRL S N L F S L Sbjct: 57 VLDHLRALFPDMDKQFLEKALEECGNDLDSTIKSLNELRLGS--AQNNLGFGAGTSDVGL 114
Query: 573 ----TLGQEGVA 596 L +GVA Sbjct: 115 ETKVQLQSQGVA 126
>tr|A9PBC1|A9PBC1_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 286
Score = 85.5 bits (210), Expect = 3e-15 Identities = 54/115 (46%), Positives = 70/115 (60%), Gaps = 5/115 (4%) Frame = +3
Query: 219 MSAVVCGKRSLFDEI---HPPIPKRLRCGGGTSPVRFASLRSGSPVGSCEACXXXXXXXX 389 MSA+VCGKRS F+E+ PP+ KR+RC +SPVRF+ RS + + + Sbjct: 1 MSAIVCGKRSFFEELTVTSPPVSKRIRCSS-SSPVRFSPPRSNTLASNPPSFNFGSSSSS 59
Query: 390 XXXXXXR--TLFPEMDGQLIEKVLESSGNNLDSAIRSLNELRLSSDVVANALNFS 548 + +FP+MD QLIEKVLE G++LDSAIRSLN+LRL S A NFS Sbjct: 60 SSTLIEQLAAIFPDMDKQLIEKVLEECGDDLDSAIRSLNDLRLGS-----AENFS 109
>tr|A9PHI2|A9PHI2_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 285
Score = 82.0 bits (201), Expect = 3e-14 Identities = 48/105 (45%), Positives = 65/105 (61%), Gaps = 5/105 (4%) Frame = +3
Query: 219 MSAVVCGKRSLFDEI---HPPIPKRLRCGGGTSPVRFASLRSGSPVGSCEACXXXXXXXX 389 MSA+VCGKRS F+E+ PP+ KR+RC +SPVRF+ RS + + + Sbjct: 1 MSAIVCGKRSFFEELTVTSPPVSKRIRCSS-SSPVRFSPPRSNTIASNPASFNFSSSSSS 59
Query: 390 XXXXXXR--TLFPEMDGQLIEKVLESSGNNLDSAIRSLNELRLSS 518 + +FP+MD QL+EK LE G++LD AIRSLNELRL+S Sbjct: 60 SSAFVEQLAAIFPDMDKQLLEKALEECGDDLDLAIRSLNELRLAS 104
>tr|Q94K99|Q94K99_ARATH Putative uncharacterized protein At5g32440 OS=Arabidopsis thaliana GN=At5g32440 PE=2 SV=1 Length = 264
Score = 75.1 bits (183), Expect = 3e-12 Identities = 53/143 (37%), Positives = 77/143 (53%), Gaps = 10/143 (6%) Frame = +3
Query: 219 MSAVVCGKRSLFDEI---HPPIPKRLRCGGGTSPVRFASLRSGSPVGSCEACXXXXXXXX 389 MSA+VCGKRSLF+++ PP+ K+LRC +S RF+ P+ + Sbjct: 1 MSAIVCGKRSLFEDLAAASPPVSKKLRCFSSSSSSRFSP-----PIPPSSSLLLDHLA-- 53
Query: 390 XXXXXXRTLFPEMDGQLIEKVLESSGNNLDSAIRSLNELRLSSDVVANALNFSNDNSA-- 563 +FP+MD Q++E+ +E G++LDSAIR LN+LRL S AN + S N + Sbjct: 54 -------AIFPDMDRQILERAIEECGDDLDSAIRCLNQLRLES---ANKNSDSATNQSPV 103
Query: 564 ----PNLTLGQEGVANQSA-VLN 617 PN+ Q+G A + VLN Sbjct: 104 VIQEPNVEPQQQGSAKEEPNVLN 126
>tr|Q8H1Q3|Q8H1Q3_ARATH Putative uncharacterized protein At5g32440 OS=Arabidopsis thaliana GN=At5g32440 PE=2 SV=1 Length = 264
Score = 75.1 bits (183), Expect = 3e-12 Identities = 53/143 (37%), Positives = 77/143 (53%), Gaps = 10/143 (6%) Frame = +3
Query: 219 MSAVVCGKRSLFDEI---HPPIPKRLRCGGGTSPVRFASLRSGSPVGSCEACXXXXXXXX 389 MSA+VCGKRSLF+++ PP+ K+LRC +S RF+ P+ + Sbjct: 1 MSAIVCGKRSLFEDLAAASPPVSKKLRCFSSSSSSRFSP-----PIPPSSSLLLDHLA-- 53
Query: 390 XXXXXXRTLFPEMDGQLIEKVLESSGNNLDSAIRSLNELRLSSDVVANALNFSNDNSA-- 563 +FP+MD Q++E+ +E G++LDSAIR LN+LRL S AN + S N + Sbjct: 54 -------AIFPDMDKQILERAIEECGDDLDSAIRCLNQLRLES---ANKNSDSATNQSPV 103
Query: 564 ----PNLTLGQEGVANQSA-VLN 617 PN+ Q+G A + VLN Sbjct: 104 VIQEPNVEPQQQGSAKEEPNVLN 126
>tr|B3H6U1|B3H6U1_ARATH Uncharacterized protein At5g32440.2 OS=Arabidopsis thaliana GN=At5g32440 PE=4 SV=1 Length = 187
Score = 75.1 bits (183), Expect = 3e-12 Identities = 53/143 (37%), Positives = 77/143 (53%), Gaps = 10/143 (6%) Frame = +3
Query: 219 MSAVVCGKRSLFDEI---HPPIPKRLRCGGGTSPVRFASLRSGSPVGSCEACXXXXXXXX 389 MSA+VCGKRSLF+++ PP+ K+LRC +S RF+ P+ + Sbjct: 1 MSAIVCGKRSLFEDLAAASPPVSKKLRCFSSSSSSRFSP-----PIPPSSSLLLDHLA-- 53
Query: 390 XXXXXXRTLFPEMDGQLIEKVLESSGNNLDSAIRSLNELRLSSDVVANALNFSNDNSA-- 563 +FP+MD Q++E+ +E G++LDSAIR LN+LRL S AN + S N + Sbjct: 54 -------AIFPDMDKQILERAIEECGDDLDSAIRCLNQLRLES---ANKNSDSATNQSPV 103
Query: 564 ----PNLTLGQEGVANQSA-VLN 617 PN+ Q+G A + VLN Sbjct: 104 VIQEPNVEPQQQGSAKEEPNVLN 126
>tr|B6TIC6|B6TIC6_MAIZE CUE domain containing protein OS=Zea mays PE=2 SV=1 Length = 282
Score = 71.6 bits (174), Expect = 4e-11 Identities = 53/132 (40%), Positives = 72/132 (54%), Gaps = 5/132 (3%) Frame = +3
Query: 219 MSAVVCGKRS---LFDEIHPPIPKRLRCGGGTSPVRFASLRSGSPVGSCEACXXXXXXXX 389 MSAVVCGKRS DE+ PP P +P R S RS S GS + Sbjct: 1 MSAVVCGKRSSSIFADELLPPSPTSPHSSHQPAPKR--SRRSPSHRGSSDG-----HRRE 53
Query: 390 XXXXXXRTLFPEMDGQLIEKVLESSGNNLDSAIRSLNELRL-SSDVVANALNFSNDNSAP 566 LFP+MD QL+EK LE+SG++LDSAI+SLN LRL S++ + ++ F ++N Sbjct: 54 ALVHHLLLLFPDMDPQLLEKALEASGDDLDSAIKSLNLLRLESAEAILSSTGFKSENGQH 113
Query: 567 N-LTLGQEGVAN 599 + EG++N Sbjct: 114 TAIQPAVEGISN 125
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