DK950541
Clone id TST38A01NGRL0008_O24
Library
Length 588
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_O24. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
CGCAGTCCTTGCGTTGTTGGCAGTGCCGTTAGCTTTAGTGTGATGTGTCGATTTGCATGC
ACCTGAGAGAGATGCATGCTACAAAGACGAAGAGCTGGGCTGATTTGAGCGAGACAAGCC
GTGGGGAGAGGCCTTGGCTCCACAAGATCTGGGACAAATGGGCAACTGCTTCCGTTGGCA
CTGTGCTGACAGGTGCTGCCCTTCTCAACCATTTACCTGATCGCCCTTCTCGAATGTTCT
CTTTGCTGGTCGCTCAGGAGGGTTTGACATTGCAGCCACCTGACTTGCGTGCTATTGTGG
ATGGAGTGAAGTCAAAGACACTTCAAAATGATTACTTCTGGATTTGTGACGGAAAATACA
TTGTGACAACAATAAGCGAGCAGTATTTTTGTGCGAGGCGTGTAAATTCTACGGCTCATG
ATGGGGAAGGGGCTATAATTGCATGCATCACAGGCTTCATTCTGATAACCACGTATGAAG
GCTCACTTGGTGCAGCAGCAAAAGCCATGGCAGTTACAGGCTTGTTAACCGAGTACCTGG
GTCAGCACAGTTGACTGGGTGAAACTTCTTTCGTAGTCTTTCCGCATT
■■Homology search results ■■ -
sp_hit_id P35475
Definition sp|P35475|IDUA_HUMAN Alpha-L-iduronidase OS=Homo sapiens
Align length 53
Score (bit) 32.0
E-value 2.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950541|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_O24, 5'
(588 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P35475|IDUA_HUMAN Alpha-L-iduronidase OS=Homo sapiens GN=IDUA... 32 2.3
sp|Q10NX8|BGAL6_ORYSJ Beta-galactosidase 6 OS=Oryza sativa subsp... 31 4.0
sp|Q969K7|TMM54_HUMAN Transmembrane protein 54 OS=Homo sapiens G... 30 6.8
sp|Q66EM1|LEU1_YERPS 2-isopropylmalate synthase OS=Yersinia pseu... 30 6.8
sp|Q8ZIG8|LEU1_YERPE 2-isopropylmalate synthase OS=Yersinia pest... 30 6.8
sp|P26011|ITB7_MOUSE Integrin beta-7 OS=Mus musculus GN=Itgb7 PE... 30 6.8
sp|Q5T749|KPRP_HUMAN Keratinocyte proline-rich protein OS=Homo s... 30 8.9

>sp|P35475|IDUA_HUMAN Alpha-L-iduronidase OS=Homo sapiens GN=IDUA
PE=1 SV=2
Length = 653

Score = 32.0 bits (71), Expect = 2.3
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -2

Query: 152 PDLVEPRPLPTACLAQISPALRLCSMHLSQVHANRH----ITLKLTALPTTQG 6
P PRPLP + PALRL S+ L V A +L ALP TQG
Sbjct: 510 PVAAAPRPLPAGGRLTLRPALRLPSLLLVHVCARPEKPPGQVTRLRALPLTQG 562


>sp|Q10NX8|BGAL6_ORYSJ Beta-galactosidase 6 OS=Oryza sativa subsp.
japonica GN=Os03g0255100 PE=1 SV=2
Length = 858

Score = 31.2 bits (69), Expect = 4.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3

Query: 48 SICMHLREMHATKTKSWADLSETSRGERPWL 140
SIC H+ EMH + SW +TS+ + P L
Sbjct: 748 SICAHVSEMHPAQIDSWISPQQTSQTQGPAL 778


>sp|Q969K7|TMM54_HUMAN Transmembrane protein 54 OS=Homo sapiens
GN=TMEM54 PE=2 SV=1
Length = 222

Score = 30.4 bits (67), Expect = 6.8
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -2

Query: 413 RRIYTPRTKILLAYCCHNVFSVTNPEVII---LKCL*LHSIHNSTQVRW 276
R + TP+ + L YC N+ SVT+ V+I + + L ST +RW
Sbjct: 44 RYVGTPQDAVALQYCVVNILSVTSAIVVITSGIAAIVLSRYLPSTPLRW 92


>sp|Q66EM1|LEU1_YERPS 2-isopropylmalate synthase OS=Yersinia
pseudotuberculosis GN=leuA PE=3 SV=1
Length = 520

Score = 30.4 bits (67), Expect = 6.8
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +3

Query: 330 DYFWICDGKYIVTTISEQYFCARRVNSTAHDGEGAIIACITGFILITTY 476
DYF + G ++ T S + C + S A G G + A IT Y
Sbjct: 394 DYFSVQSGSSVMATASVKLVCGEEIKSEAATGNGPVDAVYQAINRITDY 442


>sp|Q8ZIG8|LEU1_YERPE 2-isopropylmalate synthase OS=Yersinia pestis
GN=leuA PE=3 SV=1
Length = 520

Score = 30.4 bits (67), Expect = 6.8
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +3

Query: 330 DYFWICDGKYIVTTISEQYFCARRVNSTAHDGEGAIIACITGFILITTY 476
DYF + G ++ T S + C + S A G G + A IT Y
Sbjct: 394 DYFSVQSGSSVMATASVKLVCGEEIKSEAATGNGPVDAVYQAINRITDY 442


>sp|P26011|ITB7_MOUSE Integrin beta-7 OS=Mus musculus GN=Itgb7 PE=1
SV=2
Length = 806

Score = 30.4 bits (67), Expect = 6.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2

Query: 518 CNCHGFCCCTK*AFIRGYQNEACDAC 441
C+ HG+C C + + GY CD C
Sbjct: 613 CSGHGYCKCNRCQCLDGYYGALCDQC 638


>sp|Q5T749|KPRP_HUMAN Keratinocyte proline-rich protein OS=Homo
sapiens GN=KPRP PE=1 SV=1
Length = 579

Score = 30.0 bits (66), Expect = 8.9
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2

Query: 173 GSSCPFVPDLVEPRPLPTAC 114
G+SCP + VEPRPLP+ C
Sbjct: 364 GASCPELRPHVEPRPLPSFC 383


tr_hit_id A7QKQ0
Definition tr|A7QKQ0|A7QKQ0_VITVI Chromosome chr2 scaffold_113, whole genome shotgun sequence OS=Vitis vinifera
Align length 140
Score (bit) 109.0
E-value 1.0e-22
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950541|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_O24, 5'
(588 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7QKQ0|A7QKQ0_VITVI Chromosome chr2 scaffold_113, whole genom... 109 1e-22
tr|B6SMS9|B6SMS9_MAIZE Putative uncharacterized protein OS=Zea m... 104 3e-21
tr|B8AZV9|B8AZV9_ORYSI Putative uncharacterized protein OS=Oryza... 103 9e-21
tr|Q8LFG8|Q8LFG8_ARATH Putative uncharacterized protein OS=Arabi... 99 2e-19
tr|Q29Q75|Q29Q75_ARATH At4g19400 OS=Arabidopsis thaliana PE=2 SV=1 99 2e-19
tr|Q60E22|Q60E22_ORYSJ Os05g0241400 protein OS=Oryza sativa subs... 87 9e-16
tr|O65711|O65711_ARATH Putative uncharacterized protein AT4g1940... 77 9e-13
tr|A5AQN9|A5AQN9_VITVI Putative uncharacterized protein OS=Vitis... 60 9e-08
tr|B7FMZ4|B7FMZ4_MEDTR Putative uncharacterized protein OS=Medic... 55 3e-06
tr|Q86KK0|Q86KK0_DICDI Putative uncharacterized protein OS=Dicty... 53 1e-05
tr|A3B1R2|A3B1R2_ORYSJ Putative uncharacterized protein OS=Oryza... 53 1e-05
tr|O42838|O42838_SACPA Putative uncharacterized protein OS=Sacch... 38 0.48
tr|Q74ER8|Q74ER8_GEOSL Subtilase domain protein OS=Geobacter sul... 37 0.63
tr|Q5BCE6|Q5BCE6_EMENI Putative uncharacterized protein OS=Emeri... 35 4.1
tr|A9B399|A9B399_HERA2 Cellulose 1,4-beta-cellobiosidase OS=Herp... 34 5.3
tr|Q6D0G8|Q6D0G8_ERWCT 2-isopropylmalate synthase OS=Erwinia car... 33 9.1
tr|Q63UX9|Q63UX9_BURPS Family C40 unassigned peptidase OS=Burkho... 33 9.1
tr|Q62JR6|Q62JR6_BURMA Lipoprotein, NLP/P60 family OS=Burkholder... 33 9.1
tr|Q3JRK0|Q3JRK0_BURP1 Lipoprotein, NLP/P60 family OS=Burkholder... 33 9.1
tr|B1VUT5|B1VUT5_STRGG Putative acyl-CoA dehydrogenase OS=Strept... 33 9.1
tr|A3NW26|A3NW26_BURP0 Lipoprotein, NlpC/P60 family OS=Burkholde... 33 9.1
tr|A3NAA8|A3NAA8_BURP6 Lipoprotein, NlpC/P60 family OS=Burkholde... 33 9.1
tr|A3MKC8|A3MKC8_BURM7 Lipoprotein, NLP/P60 family OS=Burkholder... 33 9.1
tr|A2S249|A2S249_BURM9 Lipoprotein, NLP/P60 family OS=Burkholder... 33 9.1
tr|A1V4Q3|A1V4Q3_BURMS Lipoprotein, NLP/P60 family OS=Burkholder... 33 9.1
tr|B7CNG5|B7CNG5_BURPS Lipoprotein, NlpC/P60 family OS=Burkholde... 33 9.1
tr|B2GXD2|B2GXD2_BURPS Lipoprotein, NlpC/P60 family OS=Burkholde... 33 9.1
tr|B1HJS6|B1HJS6_BURPS Lipoprotein, NlpC/P60 family OS=Burkholde... 33 9.1
tr|A9KB65|A9KB65_BURMA Lipoprotein, NLP/P60 family OS=Burkholder... 33 9.1
tr|A5XGI2|A5XGI2_BURMA Lipoprotein, NLP/P60 family OS=Burkholder... 33 9.1

>tr|A7QKQ0|A7QKQ0_VITVI Chromosome chr2 scaffold_113, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00001212001
PE=4 SV=1
Length = 147

Score = 109 bits (272), Expect = 1e-22
Identities = 54/140 (38%), Positives = 87/140 (62%), Gaps = 3/140 (2%)
Frame = +3

Query: 135 WLHKIWDKWATASVGTV---LTGAALLNHLPDRPSRMFSLLVAQEGLTLQPPDLRAIVDG 305
++ K WDKW + S+G+ L A L+N+ P PSR+ S + QEG+ +P ++ VD
Sbjct: 5 FVRKAWDKWISTSIGSSGEPLKAALLINYDPTGPSRLLSTIAEQEGIRAKPIEVNQFVDF 64

Query: 306 VKSKTLQNDYFWICDGKYIVTTISEQYFCARRVNSTAHDGEGAIIACITGFILITTYEGS 485
+K LQ++ F+I +Y+VT+I + +FCAR +N++ GEGAI+ T FIL+ Y+GS
Sbjct: 65 IKRNNLQSESFFIGQNQYLVTSIHDGWFCARCMNTSHPAGEGAIVMQTTSFILVALYDGS 124

Query: 486 LGAAAKAMAVTGLLTEYLGQ 545
+G+A++AM LG+
Sbjct: 125 IGSASRAMVDVDQFAWQLGR 144


>tr|B6SMS9|B6SMS9_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 149

Score = 104 bits (260), Expect = 3e-21
Identities = 52/128 (40%), Positives = 79/128 (61%), Gaps = 3/128 (2%)
Frame = +3

Query: 135 WLHKIWDKWATASVGTV---LTGAALLNHLPDRPSRMFSLLVAQEGLTLQPPDLRAIVDG 305
W ++W+KWA +GT + A LLN+ P PSR+ ++ QEG L D++ ++D
Sbjct: 7 WARRVWEKWAAKHIGTSGKPVQAALLLNYDPSGPSRLLPVVAEQEGTQLSALDMQPLLDF 66

Query: 306 VKSKTLQNDYFWICDGKYIVTTISEQYFCARRVNSTAHDGEGAIIACITGFILITTYEGS 485
VK LQ + F + +++VT+I E +FCAR +NST +GEG I+ I +L+T Y GS
Sbjct: 67 VKRGNLQTELFSVGLNQHLVTSIHENWFCARCINSTKPEGEGVIVMQIGACLLVTMYAGS 126

Query: 486 LGAAAKAM 509
L AA++AM
Sbjct: 127 LAAASQAM 134


>tr|B8AZV9|B8AZV9_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_19120 PE=4 SV=1
Length = 149

Score = 103 bits (256), Expect = 9e-21
Identities = 52/128 (40%), Positives = 78/128 (60%), Gaps = 3/128 (2%)
Frame = +3

Query: 135 WLHKIWDKWATASVGTV---LTGAALLNHLPDRPSRMFSLLVAQEGLTLQPPDLRAIVDG 305
W + W+KWA VG + A LLN+ P PSR+ ++ QEG L+ DL +D
Sbjct: 7 WARRSWEKWAGKHVGASGKPVKAALLLNYDPTGPSRLLPVVAEQEGTELKAVDLLPFLDF 66

Query: 306 VKSKTLQNDYFWICDGKYIVTTISEQYFCARRVNSTAHDGEGAIIACITGFILITTYEGS 485
V+ LQ ++F I +Y+VT+I E +FCAR VN+ +GEG I+ I ++L+ Y+GS
Sbjct: 67 VRRNNLQMEFFSIGSNRYLVTSIHEHWFCARCVNAVQPEGEGVIVMEIGAYLLVCMYDGS 126

Query: 486 LGAAAKAM 509
LG+A++AM
Sbjct: 127 LGSASQAM 134


>tr|Q8LFG8|Q8LFG8_ARATH Putative uncharacterized protein
OS=Arabidopsis thaliana PE=2 SV=1
Length = 148

Score = 99.0 bits (245), Expect = 2e-19
Identities = 49/141 (34%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Frame = +3

Query: 135 WLHKIWDKWATA----SVGTVLTGAALLNHLPDRPSRMFSLLVAQEGLTLQPPDLRAIVD 302
++ + WDKW T S G L A L+N+ P PSR+ S + QEG+ + P DL+ +D
Sbjct: 5 FVDRAWDKWVTTGNVGSSGNPLKAAILINYDPTGPSRLLSTIAKQEGIDIYPVDLKQFID 64

Query: 303 GVKSKTLQNDYFWICDGKYIVTTISEQYFCARRVNSTAHDGEGAIIACITGFILITTYEG 482
++ L + F + +YI+T+I E +F AR +N++ GEGAI+ ++L+ Y+G
Sbjct: 65 FMRRGNLPTETFVLGSNQYIITSIHENWFAARCLNTSQPAGEGAIVMQTAVYVLVALYDG 124

Query: 483 SLGAAAKAMAVTGLLTEYLGQ 545
S+G+A++AMA L +
Sbjct: 125 SIGSASQAMAAVDQFASQLSR 145


>tr|Q29Q75|Q29Q75_ARATH At4g19400 OS=Arabidopsis thaliana PE=2 SV=1
Length = 148

Score = 99.0 bits (245), Expect = 2e-19
Identities = 49/141 (34%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Frame = +3

Query: 135 WLHKIWDKWATA----SVGTVLTGAALLNHLPDRPSRMFSLLVAQEGLTLQPPDLRAIVD 302
++ + WDKW T S G L A L+N+ P PSR+ S + QEG+ + P DL+ +D
Sbjct: 5 FVDRAWDKWVTTGNVGSSGNPLKAAILINYDPTGPSRLLSTIAKQEGIDIYPVDLKQFID 64

Query: 303 GVKSKTLQNDYFWICDGKYIVTTISEQYFCARRVNSTAHDGEGAIIACITGFILITTYEG 482
++ L + F + +YI+T+I E +F AR +N++ GEGAI+ ++L+ Y+G
Sbjct: 65 FMRCGNLPTETFVLGSNQYIITSIHENWFAARCLNTSQPAGEGAIVMQTAVYVLVALYDG 124

Query: 483 SLGAAAKAMAVTGLLTEYLGQ 545
S+G+A++AMA L +
Sbjct: 125 SIGSASQAMAAADQFASQLSR 145


>tr|Q60E22|Q60E22_ORYSJ Os05g0241400 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0004B23.1 PE=2 SV=1
Length = 150

Score = 86.7 bits (213), Expect = 9e-16
Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Frame = +3

Query: 135 WLHKIWDKWATASVGTV---LTGAALLNHLPDRPSRMFSLLVAQEGLTLQPPDLRAIVDG 305
W + W+KWA VG + A LLN+ P PSR+ ++ QEG L+ DL +D
Sbjct: 7 WARRSWEKWAGKHVGASGKPVKAALLLNYDPTGPSRLLPVVAEQEGTELKAVDLLPFLDF 66

Query: 306 VKSKTLQNDYFWICDGKYIVTTISEQYFCARRVNSTAHDGEGAIIACITGFILI 467
V+ LQ ++F I +Y+VT+I E +FCAR VN+ +GEG I+ I ++L+
Sbjct: 67 VRRNNLQMEFFSIGSNRYLVTSIHEHWFCARCVNAVQPEGEGVIVMEIGAYLLV 120


>tr|O65711|O65711_ARATH Putative uncharacterized protein AT4g19400
OS=Arabidopsis thaliana GN=AT4g19400 PE=2 SV=1
Length = 162

Score = 76.6 bits (187), Expect = 9e-13
Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 18/155 (11%)
Frame = +3

Query: 135 WLHKIWDKWATA-SVGT---------------VLTGAALLNHLPDRPSRMFSLLVAQEGL 266
++ + WDKW T +VG+ +L L+ + PSR+ S + QEG+
Sbjct: 5 FVDRAWDKWVTTGNVGSSDFEKKMKNPERKNKMLLFGDLIVGICSGPSRLLSTIAKQEGI 64

Query: 267 TLQPPDLRAIVDGVKSKTLQNDYFWICDG--KYIVTTISEQYFCARRVNSTAHDGEGAII 440
+ P DL+ +D ++ L + F + K I+T+I E +F AR +N++ GEGAI+
Sbjct: 65 DIYPVDLKQFIDFMRCGNLPTETFVLGSNQCKNIITSIHENWFAARCLNTSQPAGEGAIV 124

Query: 441 ACITGFILITTYEGSLGAAAKAMAVTGLLTEYLGQ 545
++L+ Y+GS+G+A++AMA L +
Sbjct: 125 MQTAVYVLVALYDGSIGSASQAMAAADQFASQLSR 159


>tr|A5AQN9|A5AQN9_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_022511 PE=4 SV=1
Length = 294

Score = 60.1 bits (144), Expect = 9e-08
Identities = 28/71 (39%), Positives = 46/71 (64%)
Frame = +3

Query: 255 QEGLTLQPPDLRAIVDGVKSKTLQNDYFWICDGKYIVTTISEQYFCARRVNSTAHDGEGA 434
QEG+ +P ++ VD +K LQ++ F+I +Y+VT+I + +FCAR +N++ GEGA
Sbjct: 134 QEGIRAKPIEVNQFVDFIKRNNLQSESFFIGQNQYLVTSIHDGWFCARCMNTSHPAGEGA 193

Query: 435 IIACITGFILI 467
I+ FIL+
Sbjct: 194 IVMQTASFILV 204


>tr|B7FMZ4|B7FMZ4_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=4 SV=1
Length = 96

Score = 55.1 bits (131), Expect = 3e-06
Identities = 40/139 (28%), Positives = 56/139 (40%), Gaps = 2/139 (1%)
Frame = +3

Query: 135 WLHKIWDKWATASVGT--VLTGAALLNHLPDRPSRMFSLLVAQEGLTLQPPDLRAIVDGV 308
++HK WDKWA+ ++G L A L+N P
Sbjct: 5 FVHKTWDKWASTNIGPRLPLKAALLVNFDP------------------------------ 34

Query: 309 KSKTLQNDYFWICDGKYIVTTISEQYFCARRVNSTAHDGEGAIIACITGFILITTYEGSL 488
TI E +F AR +N++ GEGAI+ +IL+ YEGS+
Sbjct: 35 --------------------TIHENWFSARCINTSKPAGEGAIVMQTAAYILVALYEGSI 74

Query: 489 GAAAKAMAVTGLLTEYLGQ 545
G A+ AMA LT LG+
Sbjct: 75 GPASCAMAAADQLTAQLGR 93


>tr|Q86KK0|Q86KK0_DICDI Putative uncharacterized protein
OS=Dictyostelium discoideum GN=DDB_0167811 PE=4 SV=1
Length = 192

Score = 53.1 bits (126), Expect = 1e-05
Identities = 30/113 (26%), Positives = 61/113 (53%)
Frame = +3

Query: 150 WDKWATASVGTVLTGAALLNHLPDRPSRMFSLLVAQEGLTLQPPDLRAIVDGVKSKTLQN 329
++K+ VG + AA+ + P ++ ++++AQ+GL ++ + I+DG+ TL
Sbjct: 65 YEKYVNQLVGKFIMSAAMFSKDFSTP-KIKNIVLAQKGLLIKVNEAIQIIDGINKGTLHQ 123

Query: 330 DYFWICDGKYIVTTISEQYFCARRVNSTAHDGEGAIIACITGFILITTYEGSL 488
+ I KYI+TT+ + + +N+ + G G II + +IL++ Y S+
Sbjct: 124 ELISISGSKYIITTVKPRSYYG--LNTNLNVGGGIIIVSLEKYILVSLYPASI 174