DK950549
Clone id TST38A01NGRL0008_P08
Library
Length 323
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_P08. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
AAAGTAAGTTCCATCCTCATAGATTGTGCGTGCAGAGAGAGAAGGAAGGCATGCCTGCCA
TCACTTCCCCCTGCGCCTTCCATCACTCCCTCCTCATTCGCTGGACAGACTTCATTTCAC
TCACCGAGCTATCCGTCAAGGATGGTTGTCTATATGCTTGCTCGCCTGTCAATAAGACGG
ACAATAAAACCCCCCCCAGAAACCATCTTGTCCCCCCCCGACCCCCCCACTTGCTCCCCC
CCCTTCACTCTACCCCCCCCATCCTACCCGACCAGTTACCTTCCGACTACCTACGGCACG
CACACGGCCTGTTTGCCTACCCA
■■Homology search results ■■ -
sp_hit_id P12328
Definition sp|P12328|CB21_LEMGI Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba
Align length 45
Score (bit) 32.0
E-value 0.97
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950549|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_P08, 5'
(323 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P12328|CB21_LEMGI Chlorophyll a-b binding protein of LHCII ty... 32 0.97
sp|P12332|CB21_SILPR Chlorophyll a-b binding protein, chloroplas... 31 1.7
sp|P34501|YMS5_CAEEL Uncharacterized protein K03H1.5 OS=Caenorha... 29 6.3
sp|Q8C432|RN182_MOUSE RING finger protein 182 OS=Mus musculus GN... 29 8.2
sp|Q8N6D2|RN182_HUMAN RING finger protein 182 OS=Homo sapiens GN... 29 8.2
sp|Q14114|LRP8_HUMAN Low-density lipoprotein receptor-related pr... 29 8.2

>sp|P12328|CB21_LEMGI Chlorophyll a-b binding protein of LHCII type
I, chloroplastic OS=Lemna gibba PE=3 SV=1
Length = 264

Score = 32.0 bits (71), Expect = 0.97
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +1

Query: 73 APSITPSSFAGQTSFHSPSYPSRMVVYMLARLSIRRTIKPPPETI 207
A +I S+FAGQT+ R V R S+RRT+K P++I
Sbjct: 3 ASAIQSSAFAGQTALKQRDELVRKVGVSDGRFSMRRTVKAVPQSI 47


>sp|P12332|CB21_SILPR Chlorophyll a-b binding protein, chloroplastic
(Fragment) OS=Silene pratensis PE=2 SV=2
Length = 205

Score = 31.2 bits (69), Expect = 1.7
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +1

Query: 79 SITPSSFAGQTSFHSPSYPSRMVVYMLARLSIRRTIKPPPETI 207
+I S+FAGQT + R V R+S+RRTIK PE+I
Sbjct: 5 TIQQSAFAGQTLLKPQNELVRKVGGNGGRVSMRRTIKSAPESI 47


>sp|P34501|YMS5_CAEEL Uncharacterized protein K03H1.5
OS=Caenorhabditis elegans GN=K03H1.5 PE=1 SV=2
Length = 1385

Score = 29.3 bits (64), Expect = 6.3
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1

Query: 55 LPSLPPAPSITPSSFAGQTSFHSPSYPSRMVVYMLARLSIRRTIKPP 195
+PS PP+ +P FA PS P+R+ Y A +R +PP
Sbjct: 1328 IPSQPPSSQYSPPVFAAPPP---PSQPTRLPTYTNAISQQQRQFEPP 1371


>sp|Q8C432|RN182_MOUSE RING finger protein 182 OS=Mus musculus
GN=Rnf182 PE=2 SV=1
Length = 247

Score = 28.9 bits (63), Expect = 8.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1

Query: 7 SSILIDCACRERRKACLPSLPPAPSITPSSFAGQTSFHSPSYPS 138
++IL++ C + K CLP P +TP A S SPS+ S
Sbjct: 85 NNILVNLTCGGKGKKCLPENPTELLLTPKRLA---SLVSPSHTS 125


>sp|Q8N6D2|RN182_HUMAN RING finger protein 182 OS=Homo sapiens
GN=RNF182 PE=2 SV=1
Length = 247

Score = 28.9 bits (63), Expect = 8.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1

Query: 7 SSILIDCACRERRKACLPSLPPAPSITPSSFAGQTSFHSPSYPS 138
++IL++ C + K CLP P +TP A S SPS+ S
Sbjct: 85 NNILVNLTCGGKGKKCLPENPTELLLTPKRLA---SLVSPSHTS 125


>sp|Q14114|LRP8_HUMAN Low-density lipoprotein receptor-related
protein 8 OS=Homo sapiens GN=LRP8 PE=1 SV=3
Length = 963

Score = 28.9 bits (63), Expect = 8.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1

Query: 61 SLPPAPSITPSSFAGQTSFHSPSY 132
S+P APSI+PS+ + TS HS Y
Sbjct: 789 SVPRAPSISPSTLSPATSNHSQHY 812


tr_hit_id Q3JKW7
Definition tr|Q3JKW7|Q3JKW7_BURP1 Putative uncharacterized protein OS=Burkholderia pseudomallei (strain 1710b)
Align length 70
Score (bit) 32.7
E-value 9.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950549|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_P08, 5'
(323 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q3JKW7|Q3JKW7_BURP1 Putative uncharacterized protein OS=Burkh... 33 9.2

>tr|Q3JKW7|Q3JKW7_BURP1 Putative uncharacterized protein
OS=Burkholderia pseudomallei (strain 1710b)
GN=BURPS1710b_A0627 PE=4 SV=1
Length = 1788

Score = 32.7 bits (73), Expect = 9.2
Identities = 26/70 (37%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Frame = +1

Query: 25 CACRERRKACLPSLPPA---------PSITPSSFAGQTSFHSPSYPSRMVVYMLARLSIR 177
CAC AC P+ A PS TPS F G S + PSR A +SI
Sbjct: 1062 CACHA---ACAPASACAMPAGANASSPSCTPSRFCGSKSSATTGRPSRASSAASAAVSIV 1118

Query: 178 RTIKPPPETI 207
R P ETI
Sbjct: 1119 RPAPPVVETI 1128