DK950551
Clone id TST38A01NGRL0008_P10
Library
Length 639
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_P10. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
CGCTTGTCTACGCATCCGAAATAGAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCAGACATGGCATTGTGCTCGCGTAGACGGCTCCAATGAGACCGCGCTCGGCGTGTGAT
CGGAGGTGGGAGCAGACCATTGGAGCAGGTCGAGGAGGCAGCAGCAGAGAAGGAGAAGCT
GGGTTATGGCGTCTGCATCTTACTCCTATCAAGTCCCTTTCATGTGCGTCTCGCTCTGTA
TGTGCTTTCATCTATGCTCGGCCTCTCTGTTGCAAGACCTAGGAGTGGATCTCTCTTTTA
CTCGACCTCGGCTTCAGGAACTCCGCCCCGCAGACGACAGCAGAATTACCAGTGCTGGGA
ATGGTATACCTTCATCCACATCCATACCCTCACCCTCACCCTCACCCTCACCTTCACCTT
CACCTTCACCTTCACCTTCACCTTCACCATCGCCCGCCCTGGTGCATACACACACATACA
CACCCACTCCCTCATACACAATCCCTTCGCAAGCACCCATTCCCCTCAGCGGCTCCAGTC
AACAACCTCGCGAGTCTGCATTTCACAGGCGTGGCAGAATCCTGCCTTTGTCCTGGTATC
CATTGCAGGCACCCTCCAAGCTCTGATTGCACTCTTCCT
■■Homology search results ■■ -
sp_hit_id A3DNA4
Definition sp|A3DNA4|RL3_STAMF 50S ribosomal protein L3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)
Align length 32
Score (bit) 30.4
E-value 8.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950551|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_P10, 5'
(639 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A3DNA4|RL3_STAMF 50S ribosomal protein L3P OS=Staphylothermus... 30 8.1
sp|O31458|GAMA_BACSU Probable glucosamine-6-phosphate deaminase ... 30 8.1

>sp|A3DNA4|RL3_STAMF 50S ribosomal protein L3P OS=Staphylothermus
marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl3p
PE=3 SV=1
Length = 395

Score = 30.4 bits (67), Expect = 8.1
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3

Query: 519 IPLSGSSQQPRESAFHRRGRILPLSWYPLQAP 614
I L GS PR+ R I P SWYPL+AP
Sbjct: 351 IMLHGSIIGPRKRLLVLRHPIRPPSWYPLEAP 382


>sp|O31458|GAMA_BACSU Probable glucosamine-6-phosphate deaminase 2
OS=Bacillus subtilis GN=gamA PE=3 SV=1
Length = 249

Score = 30.4 bits (67), Expect = 8.1
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = -1

Query: 375 MKVYHSQHW*FCCRLRGGVPEAEVE*KRDPLLGLAT 268
MK+ ++H+ C+L + + +++ K+D +LGLAT
Sbjct: 1 MKILIAEHYEELCKLSAAIIKEQIQAKKDAVLGLAT 36


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950551|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_P10, 5'
(639 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******