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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950560
Clone id TST38A01NGRL0008_P19
Library
Length 806
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_P19. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
CACAGCCCCTACAAGACCGTATGGTGTGCACTCTCAAGGGGCTTCTGGCAGAGGGTGAAC
CGCACCGCCTGCGAATCCACTCTGCCTATCTCTTGTTTCTGTTGGGTAAGCTTGATGGCG
AGTGCATCCGTCTTATTCAAGTCATCCAGCCTCGCCATGAAGTTTTCTGGTATGAGTCAG
AAAAGAAGATGCTGGACTTCTTTTACGACCACTTCTACAAGGCCACAGGACATCGACGTC
GCCCTCGCTACCCCGACATTGTTCGTCCAGATGACACACTGTCTATTCAGCCTCGCGTTC
TCCCGGCCGATTTTGTTGACAATATTAACCTCGAAAATATTAACCCAGATCAGGACGACG
ACATTATCAAGCCCACCTATCGAGGTTGCATGCCAGCTTTGTTCAAGTTCTAGCTGTTGC
AATTGTGATGTAACCGAACTGCATTTTCCCAAGGACAAATTAAGCCAAAACCCACCCGGC
GGTTGGGGCTCAGGAGTCAGGACTAGGTGATGCGATGCGGAAGGGTGGGATCTACGGTGG
GAGGATTGTGGGCCGTGGTCCTGGACAGTGCTGGAAATTGCAACCCTTCCCACCCTTCCT
TAGGGGTCTAGCCTTGCACATGCATGGCACTTTTGTGATAGGGCTTTCCCGATGAAAGAG
CATGCCCTTTCAAAAGGCCCCTTCCCCATTAAACGGGTTCCTTTTAAAAATAACCCCTTC
CCTAAGGAATTTGCAAGTTTTTGAAAAATGGCCCTTTCCCAAAGAATAAAATTTCCTATA
AAAAAATTAACCCCCAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q869Y7
Definition sp|Q869Y7|ODO2_DICDI Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Dictyostelium discoideum
Align length 94
Score (bit) 36.2
E-value 0.22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950560|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_P19, 5'
         (795 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q869Y7|ODO2_DICDI Dihydrolipoyllysine-residue succinyltransfe...    36   0.22 
sp|Q0B0A0|UVRC_SYNWW UvrABC system protein C OS=Syntrophomonas w...    36   0.28 
sp|Q9NX45|SOLH2_HUMAN Spermatogenesis- and oogenesis-specific ba...    31   6.9  

>sp|Q869Y7|ODO2_DICDI Dihydrolipoyllysine-residue
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex, mitochondrial OS=Dictyostelium
           discoideum GN=odhB PE=1 SV=1
          Length = 439

 Score = 36.2 bits (82), Expect = 0.22
 Identities = 30/94 (31%), Positives = 44/94 (46%)
 Frame = -2

Query: 392 HATSIGGLDNVVVLIWVNIFEVNIVNKIGRENARLNRQCVIWTNNVGVARATSMSCGLVE 213
           H    G +   V    + + E  IVN    EN       +++ NNV +  A S   GLV 
Sbjct: 262 HGVKFGFMSAFVKASTIALKEQPIVNASVEEND------IVYHNNVNINVAVSAPRGLVV 315

Query: 212 VVVKEVQHLLF*LIPENFMARLDDLNKTDALAIK 111
            V++  ++L F  I E  + RL  L + DALAI+
Sbjct: 316 PVIRNCENLSFADI-EKEIGRLSGLARNDALAIE 348


>sp|Q0B0A0|UVRC_SYNWW UvrABC system protein C OS=Syntrophomonas
           wolfei subsp. wolfei (strain Goettingen) GN=uvrC PE=3
           SV=1
          Length = 601

 Score = 35.8 bits (81), Expect = 0.28
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
 Frame = +3

Query: 33  LKGLLAEGEPHRLRIHSAYLLFLLGKLDGECIRLIQVIQPRH------EVFWY-----ES 179
           ++ L   GE  ++ + S Y L L+G L GE   L+ V + R       + FW      E 
Sbjct: 231 IQSLRQLGEKQKIELASPYELDLVGMLSGEKENLVLVFKVRSGKIVGKDTFWLKRPIQED 290

Query: 180 EKKMLDFFYDHFY 218
           E + ++FF  H+Y
Sbjct: 291 ENEAMEFFIKHYY 303


>sp|Q9NX45|SOLH2_HUMAN Spermatogenesis- and oogenesis-specific basic
           helix-loop-helix-containing protein 2 OS=Homo sapiens
           GN=SOHLH2 PE=2 SV=2
          Length = 425

 Score = 31.2 bits (69), Expect = 6.9
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
 Frame = -2

Query: 383 SIGGLDNVVVLIWVNIFEVNIVNKIGRENARLNRQCVIWTNNVGVARATSMSCGLVEVVV 204
           ++G L + V  ++ NI EV I     +E A L   C+   N V +   +S+S   +E + 
Sbjct: 28  TVGYLADTVQKLFANIAEVTITISDTKEAAALLDDCIF--NMVLLKVPSSLSAEELEAIK 85

Query: 203 -------KEVQHLLF*LIPENFMARLDDLNKTDALAIKLTQQK 96
                  K    L   +IPENF   +       AL   LT +K
Sbjct: 86  LIRFGKKKNTHSLFVFIIPENFKGCISGHGMDIALTEPLTMEK 128
tr_hit_id A5K7K9
Definition tr|A5K7K9|A5K7K9_PLAVI Putative uncharacterized protein OS=Plasmodium vivax
Align length 105
Score (bit) 38.9
E-value 0.41
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950560|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_P19, 5'
         (795 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5K7K9|A5K7K9_PLAVI Putative uncharacterized protein OS=Plasm...    39   0.41 
tr|B1IDS3|B1IDS3_CLOBK Metallo-beta-lactamase family protein OS=...    36   2.7  
tr|B1Q6B9|B1Q6B9_CLOBO Metallo-beta-lactamase family protein OS=...    35   4.6  
tr|B1KW97|B1KW97_CLOBM Metallo-beta-lactamase family protein OS=...    35   6.0  

>tr|A5K7K9|A5K7K9_PLAVI Putative uncharacterized protein
           OS=Plasmodium vivax GN=PVX_095145 PE=4 SV=1
          Length = 2581

 Score = 38.9 bits (89), Expect = 0.41
 Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
 Frame = +3

Query: 75  IHSAYLLFLLGKLDGECIRLIQVIQPRHEVFWYESEKKMLDFFYDHFYKATGHRRRPRYP 254
           + SAYL+F+      +CI              Y+S KK L F             +P Y 
Sbjct: 699 LKSAYLMFI--NTSNQCIDRFSEKNDFANTANYKSRKKKLMFLL--------LTSKPYYD 748

Query: 255 DIVRPDDTLSIQPR-VLPADFVDNINLENINPDQDDDIIKPTYRG 386
           D  R DD LSI P  V    +V+ I+         DD+I+ TY+G
Sbjct: 749 DEERTDDLLSITPNDVAIIKYVNKIDERKYGSTHTDDVIELTYKG 793


>tr|B1IDS3|B1IDS3_CLOBK Metallo-beta-lactamase family protein
           OS=Clostridium botulinum (strain Okra / Type B1)
           GN=CLD_0099 PE=4 SV=1
          Length = 410

 Score = 36.2 bits (82), Expect = 2.7
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = +3

Query: 135 IQVIQPRHEVFWYESEKKMLDFFYDHFYKATGHRRRPRYPDIVRPDDTLSIQPRVLPADF 314
           I++I P H +   E+ KK +D  YD   K T   ++         ++T  I   +     
Sbjct: 216 IEIIAPSHGLILRENAKKFIDI-YDEMSKNTNVDKKVLILYSTMTNNTKKISELIKEHFE 274

Query: 315 VDNINLE--NINPDQDDDIIK 371
            DNIN E  N+N   D+DI+K
Sbjct: 275 KDNINAELINVNKTSDEDILK 295


>tr|B1Q6B9|B1Q6B9_CLOBO Metallo-beta-lactamase family protein
           OS=Clostridium botulinum NCTC 2916 GN=CBN_0705 PE=4 SV=1
          Length = 410

 Score = 35.4 bits (80), Expect = 4.6
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +3

Query: 135 IQVIQPRHEVFWYESEKKMLDFFYDHFYKATGHRRRPRYPDIVRPDDTLSIQPRVLPADF 314
           I++I P H     E+ KK +D  YD   K T   ++         ++T  I   +     
Sbjct: 216 IEIIAPSHGFILRENAKKFIDI-YDEMSKNTNVDKKVLILYSTMTNNTKKISELIKEHFE 274

Query: 315 VDNINLE--NINPDQDDDIIK 371
            DNIN E  N+N   D+DI+K
Sbjct: 275 KDNINAELINVNKTSDEDILK 295


>tr|B1KW97|B1KW97_CLOBM Metallo-beta-lactamase family protein
           OS=Clostridium botulinum (strain Loch Maree / Type A3)
           GN=CLK_0059 PE=4 SV=1
          Length = 410

 Score = 35.0 bits (79), Expect = 6.0
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +3

Query: 135 IQVIQPRHEVFWYESEKKMLDFFYDHFYKATGHRRRPRYPDIVRPDDTLSIQPRVLPADF 314
           I++I P H     E+ KK +D  YD   K T   ++         ++T  I   +     
Sbjct: 216 IEIIAPSHGFILRENAKKFIDI-YDEMSKNTNIDKKVLILYSTMTNNTKKISELIKGHFQ 274

Query: 315 VDNINLE--NINPDQDDDIIK 371
            DNIN E  N+N   D+DI+K
Sbjct: 275 KDNINTELINVNKTSDEDILK 295