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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950573
Clone id TST38A01NGRL0009_A09
Library
Length 663
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_A09. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
GTCGAGGGGAGTACGTAGGCTATGGCGCCCAAGCGAGGAGGGTCGAAGGTCATCGGTAGC
GATGCCCTCTGGAGGGCTCCTCTGGGGGAGCGACCCGTTCCAAGAATATCTTCTTCCATG
CTCTCTGTGCGTCGAGCTCCCAACTTCGACTACGCCATGAGTATCATGAAACATCCTGAC
CCTATTGGGATGGGGCTAGCTAGTGAGGCCCTTTTGGAAGCTGCTGGTCCCGATTGTATT
GTACCAGGTCAACAAAAACATGTCAAACTTCTTGGATTACAGGTTTGGCCTATCAGCACG
CCTGATTTAAATTTCAAAGCTTTGGAGCCAATAGGGCGTGAAGTGAAAACATTCTGCAGG
ATGCTGTATAGAGCTTTTGACATTATGCAAGCGCCATTCAATGAGAGATGAAAAAAAAAG
TTGGTCAGACTTACATGTTATTGCCGGCATTCTTTTCCTTTTGGAGGCTTCCAATAAAGC
GGATTCAACATCTAGCCTCGGAGCTCACATGGGTCAGCGACGCAGCAGATAGCCGACTCA
CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGTATGTATT
TTTTTGCTATTGTTGTGTTTGGCTTCCCAGTAGTTCTGACTTGCTTATTACAAGCTGGTC
TGA
■■Homology search results ■■ -
sp_hit_id P08151
Definition sp|P08151|GLI1_HUMAN Zinc finger protein GLI1 OS=Homo sapiens
Align length 90
Score (bit) 31.6
E-value 3.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950573|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_A09, 5'
         (663 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P08151|GLI1_HUMAN Zinc finger protein GLI1 OS=Homo sapiens GN...    32   3.9  
sp|O15230|LAMA5_HUMAN Laminin subunit alpha-5 OS=Homo sapiens GN...    31   6.7  

>sp|P08151|GLI1_HUMAN Zinc finger protein GLI1 OS=Homo sapiens
           GN=GLI1 PE=1 SV=1
          Length = 1106

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
 Frame = -2

Query: 395 GACIMSKALYSI-------LQNVFTSRPIGSKALKFKS----GVLIGQTCNP------RS 267
           G CI    L ++       L  +   RPIG++ LK  S    G  + +   P      RS
Sbjct: 484 GPCIAGTGLSTLRRLENLRLDQLHQLRPIGTRGLKLPSLSHTGTTVSRRVGPPVSLERRS 543

Query: 266 LTCFC*PGTIQSGPAASKRASLASPIPIGS 177
            +      +I S    S+R+SLASP P GS
Sbjct: 544 SSS----SSISSAYTVSRRSSLASPFPPGS 569


>sp|O15230|LAMA5_HUMAN Laminin subunit alpha-5 OS=Homo sapiens
           GN=LAMA5 PE=2 SV=6
          Length = 3695

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 329 GSKALKFKSGVLIGQTCNPRSLTCFC*PGTIQSGPAASKRA 207
           G ++ +   G  +GQ+C PR+  C C P T   GP  S+ A
Sbjct: 825 GCRSCRCDIGGALGQSCEPRTGVCRCRPNT--QGPTCSEPA 863
tr_hit_id A9TYC8
Definition tr|A9TYC8|A9TYC8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 131
Score (bit) 147.0
E-value 4.0e-34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950573|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_A09, 5'
         (663 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TYC8|A9TYC8_PHYPA Predicted protein OS=Physcomitrella paten...   147   4e-34
tr|A9NPV2|A9NPV2_PICSI Putative uncharacterized protein OS=Picea...   129   1e-28
tr|A5BED8|A5BED8_VITVI Putative uncharacterized protein (Chromos...   109   1e-22
tr|Q8W455|Q8W455_ARATH Putative uncharacterized protein (Putativ...   104   6e-21
tr|A2WVM6|A2WVM6_ORYSI Putative uncharacterized protein OS=Oryza...    95   3e-18
tr|B6U8W1|B6U8W1_MAIZE Putative uncharacterized protein OS=Zea m...    94   6e-18
tr|B6TT76|B6TT76_MAIZE Putative uncharacterized protein OS=Zea m...    94   6e-18
tr|Q8LJ42|Q8LJ42_ORYSJ Putative uncharacterized protein P0413G02...    92   3e-17
tr|Q0JIU7|Q0JIU7_ORYSJ Os01g0776700 protein OS=Oryza sativa subs...    92   4e-17
tr|A2ZYD5|A2ZYD5_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.034
tr|Q9I9Z7|Q9I9Z7_BAMTH Gag polyprotein (Fragment) OS=Bambusicola...    34   7.1  
tr|Q9I9Z6|Q9I9Z6_BAMTH Gag polyprotein (Fragment) OS=Bambusicola...    34   7.1  

>tr|A9TYC8|A9TYC8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_199459 PE=4 SV=1
          Length = 131

 Score =  147 bits (372), Expect = 4e-34
 Identities = 74/131 (56%), Positives = 95/131 (72%), Gaps = 2/131 (1%)
 Frame = +1

Query: 22  MAPKRGGSKVIGSDALWRAPLGERPVPRISSS-MLSVRRAPNFDYAMSIMKHPDPIGMGX 198
           MAPK+  S+    DA WRA  GE+PVPRI+   +++VR+  N+ YA+SIMKHPDPIG G 
Sbjct: 1   MAPKKRTSRFANEDAPWRALKGEKPVPRINKGGVVAVRQGANYQYAISIMKHPDPIGYGL 60

Query: 199 XXXXXXXXXGPDCIVPGQQKHVKLLGLQVWPIS-TPDLNFKALEPIGREVKTFCRMLYRA 375
                    GPDCI+PG Q+ VK+LGLQVWPI   P ++ KALEPIGRE+KT  ++L +A
Sbjct: 61  AREAYVEPAGPDCIIPGLQRPVKVLGLQVWPIPFKPVISLKALEPIGRELKTVGKLLDKA 120

Query: 376 FDIMQAPFNER 408
           FD+MQAPF+ER
Sbjct: 121 FDLMQAPFSER 131


>tr|A9NPV2|A9NPV2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 124

 Score =  129 bits (325), Expect = 1e-28
 Identities = 65/124 (52%), Positives = 86/124 (69%), Gaps = 1/124 (0%)
 Frame = +1

Query: 40  GSKVIGSDALWRAPLGERPVPRISSS-MLSVRRAPNFDYAMSIMKHPDPIGMGXXXXXXX 216
           G KV+  D  WRA    R VPRIS + +L+VR  PN +YA+SIMKHPDPIG G       
Sbjct: 4   GRKVLAEDVPWRATAKGRSVPRISQAPVLAVRHTPNSNYALSIMKHPDPIGKGLATEAFV 63

Query: 217 XXXGPDCIVPGQQKHVKLLGLQVWPISTPDLNFKALEPIGREVKTFCRMLYRAFDIMQAP 396
              GPDCIVPGQ + +KLLGLQ+WPI   ++++K ++PI RE+KT  +++  AFD+MQAP
Sbjct: 64  EPAGPDCIVPGQIRPIKLLGLQLWPI---EMDWKFMKPIAREMKTVGKLVDSAFDLMQAP 120

Query: 397 FNER 408
           F +R
Sbjct: 121 FGDR 124


>tr|A5BED8|A5BED8_VITVI Putative uncharacterized protein (Chromosome
           chr8 scaffold_106, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00000610001 PE=4 SV=1
          Length = 126

 Score =  109 bits (273), Expect = 1e-22
 Identities = 57/127 (44%), Positives = 77/127 (60%), Gaps = 1/127 (0%)
 Frame = +1

Query: 31  KRGGSKVIGSDALWRAPLGERPVPRISSS-MLSVRRAPNFDYAMSIMKHPDPIGMGXXXX 207
           KRGG   +  D  WRA    +P+P+I  S +L V + P+  YA+SIMKHP+PIG G    
Sbjct: 3   KRGGGAALQKDVPWRASPSGKPIPKIHHSPILRVSQTPSSHYALSIMKHPNPIGDGLATE 62

Query: 208 XXXXXXGPDCIVPGQQKHVKLLGLQVWPISTPDLNFKALEPIGREVKTFCRMLYRAFDIM 387
                 GPDCIVPGQ   V+LLGL+VWPI    ++ K +EP+GRE+K   + +  A D+M
Sbjct: 63  AIVEAAGPDCIVPGQVTPVRLLGLKVWPI---HIDMKFMEPVGRELKLLGKFMDSAVDLM 119

Query: 388 QAPFNER 408
              F +R
Sbjct: 120 NKSFIDR 126


>tr|Q8W455|Q8W455_ARATH Putative uncharacterized protein (Putative
           uncharacterized protein At2g36835/T1J8.24) (Expressed
           protein) OS=Arabidopsis thaliana GN=At2g36835/T1J8.24
           PE=2 SV=1
          Length = 124

 Score =  104 bits (259), Expect = 6e-21
 Identities = 53/127 (41%), Positives = 82/127 (64%), Gaps = 1/127 (0%)
 Frame = +1

Query: 31  KRGGSKVIGSDALWRAPLGERPVPRISSS-MLSVRRAPNFDYAMSIMKHPDPIGMGXXXX 207
           K+GG+  +  DA WR   G RPVP+IS S +LS+ + P  DYA+S+MKHP+P+G G    
Sbjct: 3   KKGGA-TLAEDAPWRVSSG-RPVPKISRSPVLSISQNPETDYAISVMKHPNPVGGGFAME 60

Query: 208 XXXXXXGPDCIVPGQQKHVKLLGLQVWPISTPDLNFKALEPIGREVKTFCRMLYRAFDIM 387
                 GP+C+VPGQ   ++LLG++VWP+   +++ K LEP+G+E+K   + +  A ++M
Sbjct: 61  AVLESAGPECVVPGQVTPLRLLGVKVWPV---EVDLKFLEPVGKELKMLGKFMDNAVELM 117

Query: 388 QAPFNER 408
              F +R
Sbjct: 118 NKSFIDR 124


>tr|A2WVM6|A2WVM6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_03946 PE=4 SV=1
          Length = 162

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 5/135 (3%)
 Frame = +1

Query: 19  AMAPKRGGSKVIGSDALWRAPL----GERPVPRISSS-MLSVRRAPNFDYAMSIMKHPDP 183
           A A KR    + G DA WRA      G RPVPRI  + +L V +     YA+++MKHPDP
Sbjct: 33  AAAAKR--PHLAGDDAPWRAAATGAAGIRPVPRIHHAPVLRVAQDDYSAYALAVMKHPDP 90

Query: 184 IGMGXXXXXXXXXXGPDCIVPGQQKHVKLLGLQVWPISTPDLNFKALEPIGREVKTFCRM 363
           IG G          GP+CIVPGQQ  ++LLGL+VWP+   D+  K LEP GRE+ +  + 
Sbjct: 91  IGEGLAMEAMVEAAGPECIVPGQQAPLRLLGLKVWPL---DIEMKFLEPFGRELHSMKKF 147

Query: 364 LYRAFDIMQAPFNER 408
           + ++  +M +  + +
Sbjct: 148 MDKSCSVMDSSMSNK 162


>tr|B6U8W1|B6U8W1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 149

 Score = 94.4 bits (233), Expect = 6e-18
 Identities = 54/135 (40%), Positives = 82/135 (60%), Gaps = 10/135 (7%)
 Frame = +1

Query: 19  AMAPKRGGSKVI--GSDALWRAPL------GERPVPRIS-SSMLSVR-RAPNFDYAMSIM 168
           +++P  G  + +  G DA WRA        G RPVPRI+ +S+L V  +  +  YA++IM
Sbjct: 13  SISPHAGSKRPLLAGDDAPWRATAATSAGQGIRPVPRINHASVLRVSTQEDSAAYALAIM 72

Query: 169 KHPDPIGMGXXXXXXXXXXGPDCIVPGQQKHVKLLGLQVWPISTPDLNFKALEPIGREVK 348
           KHPDPIG G          GP+CIVPGQQ  ++L+GL+VWP+   D++ K LEP GRE+ 
Sbjct: 73  KHPDPIGEGLAMEAFAEAAGPECIVPGQQAPLRLMGLKVWPV---DIDMKFLEPFGRELH 129

Query: 349 TFCRMLYRAFDIMQA 393
           +  + + ++  +M +
Sbjct: 130 SMKKFMDKSCSVMDS 144


>tr|B6TT76|B6TT76_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 161

 Score = 94.4 bits (233), Expect = 6e-18
 Identities = 54/135 (40%), Positives = 82/135 (60%), Gaps = 10/135 (7%)
 Frame = +1

Query: 19  AMAPKRGGSKVI--GSDALWRAPL------GERPVPRIS-SSMLSVR-RAPNFDYAMSIM 168
           +++P  G  + +  G DA WRA        G RPVPRI+ +S+L V  +  +  YA++IM
Sbjct: 25  SISPHAGSKRPLLAGDDAPWRATAATSAGQGIRPVPRINHASVLRVSTQEDSAAYALAIM 84

Query: 169 KHPDPIGMGXXXXXXXXXXGPDCIVPGQQKHVKLLGLQVWPISTPDLNFKALEPIGREVK 348
           KHPDPIG G          GP+CIVPGQQ  ++L+GL+VWP+   D++ K LEP GRE+ 
Sbjct: 85  KHPDPIGEGLAMEAFAEAAGPECIVPGQQAPLRLMGLKVWPV---DIDMKFLEPFGRELH 141

Query: 349 TFCRMLYRAFDIMQA 393
           +  + + ++  +M +
Sbjct: 142 SMKKFMDKSCSVMDS 156


>tr|Q8LJ42|Q8LJ42_ORYSJ Putative uncharacterized protein P0413G02.21
           OS=Oryza sativa subsp. japonica GN=P0413G02.21 PE=4 SV=1
          Length = 150

 Score = 92.0 bits (227), Expect = 3e-17
 Identities = 54/121 (44%), Positives = 72/121 (59%), Gaps = 5/121 (4%)
 Frame = +1

Query: 19  AMAPKRGGSKVIGSDALWRAPL----GERPVPRISSS-MLSVRRAPNFDYAMSIMKHPDP 183
           A A KR    + G DA WRA      G RPVPRI  + +L V +     YA+++MKHPDP
Sbjct: 33  AAAAKR--PHLAGDDAPWRAAATGAAGIRPVPRIHHAPVLRVAQDDYSAYALAVMKHPDP 90

Query: 184 IGMGXXXXXXXXXXGPDCIVPGQQKHVKLLGLQVWPISTPDLNFKALEPIGREVKTFCRM 363
           IG G          GP+CIVPGQQ  ++LLGL+VWP+   D+  K LEP GRE+ +  ++
Sbjct: 91  IGEGLAMEAMVEAAGPECIVPGQQAPLRLLGLKVWPL---DIEMKFLEPFGRELHSMKKV 147

Query: 364 L 366
           +
Sbjct: 148 M 148


>tr|Q0JIU7|Q0JIU7_ORYSJ Os01g0776700 protein OS=Oryza sativa subsp.
           japonica GN=Os01g0776700 PE=4 SV=1
          Length = 153

 Score = 91.7 bits (226), Expect = 4e-17
 Identities = 54/120 (45%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
 Frame = +1

Query: 19  AMAPKRGGSKVIGSDALWRAPL----GERPVPRISSS-MLSVRRAPNFDYAMSIMKHPDP 183
           A A KR    + G DA WRA      G RPVPRI  + +L V +     YA+++MKHPDP
Sbjct: 33  AAAAKR--PHLAGDDAPWRAAATGAAGIRPVPRIHHAPVLRVAQDDYSAYALAVMKHPDP 90

Query: 184 IGMGXXXXXXXXXXGPDCIVPGQQKHVKLLGLQVWPISTPDLNFKALEPIGREVKTFCRM 363
           IG G          GP+CIVPGQQ  ++LLGL+VWP+   D+  K LEP GRE+ +  ++
Sbjct: 91  IGEGLAMEAMVEAAGPECIVPGQQAPLRLLGLKVWPL---DIEMKFLEPFGRELHSMKKL 147


>tr|A2ZYD5|A2ZYD5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_003557 PE=4 SV=1
          Length = 62

 Score = 42.0 bits (97), Expect = 0.034
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +1

Query: 226 GPDCIVPGQQKHVKLLGLQV--WPISTPDLNFKALEPIGREVKTFCRM 363
           GP+CIVPGQQ      G QV  W +   D+  K LEP GRE+ +  ++
Sbjct: 9   GPECIVPGQQAPAAAAGPQVLLWLVWPLDIEMKFLEPFGRELHSMKKL 56