DK950576
Clone id TST38A01NGRL0009_A20
Library
Length 729
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_A20. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
GCCATCTTCTGTGGAGAGGTCGACACTGAAGAGCTATGGCGACCATGTCTGCGTCTCTGG
CCGTGAGCGCGCCGAGCTGCCCACCCGCAGAGCAGAGCCTCTCACAGAAGAGCTTCTCGG
GCCTCAAGGCGACCACTCTATTCGCCCTCAAGTGCGGCAATCCCCTCGCCCTCTCCAATG
GCAGCCGCATCAGCGCCATGCTGGTGTGGAAGCCGTACGACAACAAGAAGTTTGAGACTC
TGTCATATCTGCCGCAGCTGAGTAGCGAGCAGATAGCAAAGCAGGTGGACTACATGGTGC
GACAGAACTTTACCCCCTGCATCGAGTTCGACAACATTGGGAGCGTGTACCGGGAGCACT
TCCACGGGAGCGGGTACTACGATGGGAGGTACTGGGTGATGTGGAAGCTGCCCATGTTTG
GCTGCACCGACTCTGCCGCCGTTCTGCGAGAGATTACTGAGTGCGCCAAGGAGTATCCCA
AGGCCTTCATCCGGGTGCTTGGCTTCGATGCCAAGCGCCAGGTCCAGGTTGCTGGCTTCC
TCGTCCAGAAGCCTGGCCAGTAACCTCATCTGAGTTACTCCTTGGGAGACATTGATCACA
ATAATTTGGGAGGCAAATCGCCCTTTCAAAGCTTGATACGCTGTCGTTGTGGCTGCTGTT
GGCTTCATGTTTTGTCCATAAGGCATTTAGAGTATATGGACACACTTTTTGAAGAAAATG
TCCAGCATA
■■Homology search results ■■ -
sp_hit_id Q96542
Definition sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa
Align length 176
Score (bit) 190.0
E-value 6.0e-48
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950576|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_A20, 5'
(729 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 190 6e-48
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai... 187 7e-47
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch... 186 9e-47
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch... 184 3e-46
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch... 184 4e-46
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch... 183 7e-46
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai... 183 9e-46
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai... 183 9e-46
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha... 182 1e-45
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha... 182 2e-45
sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha... 181 3e-45
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha... 181 4e-45
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai... 181 5e-45
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai... 180 8e-45
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha... 180 8e-45
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai... 179 1e-44
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha... 179 1e-44
sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha... 178 2e-44
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai... 177 4e-44
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai... 176 9e-44
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha... 176 9e-44
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai... 176 1e-43
sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai... 176 1e-43
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai... 176 2e-43
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha... 176 2e-43
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha... 175 2e-43
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha... 175 3e-43
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha... 175 3e-43
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha... 175 3e-43
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai... 174 3e-43

>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
Length = 182

Score = 190 bits (483), Expect = 6e-48
Identities = 96/176 (54%), Positives = 119/176 (67%), Gaps = 5/176 (2%)
Frame = +3

Query: 42 TMSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLA--LSNGSRISAMLVW 209
+M +S V+A S QS F+ LK+T+ F + K N + SNG R+ M VW
Sbjct: 4 SMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVW 63

Query: 210 KPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDG 386
P KKFETLSYLP LSSEQ+AK+VDY++R+N PC+EF+ G VYREH GYYDG
Sbjct: 64 PPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDG 123

Query: 387 RYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 554
RYW MWKLPMFGC DS+ VL+E+ EC K YP AFIR++GFD KRQVQ+ F+ KP
Sbjct: 124 RYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
Length = 181

Score = 187 bits (474), Expect = 7e-47
Identities = 93/178 (52%), Positives = 119/178 (66%), Gaps = 5/178 (2%)
Frame = +3

Query: 36 MATMSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLAL--SNGSRISAML 203
MA++S+S + + SL+ F+GLK+ F + K N + SNG R+ M
Sbjct: 1 MASISSSAIATVNRTTSTQASLAAP-FTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMK 59

Query: 204 VWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYY 380
VW P KK+ETLSYLP LS E ++K++DY++R + PC+EF+ G VYREH H GYY
Sbjct: 60 VWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYY 119

Query: 381 DGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 554
DGRYW MWKLPMFGCTDSA V++E+ EC KEYP AFIRV+GFD RQVQ F+V KP
Sbjct: 120 DGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
PE=1 SV=2
Length = 180

Score = 186 bits (473), Expect = 9e-47
Identities = 90/175 (51%), Positives = 116/175 (66%), Gaps = 5/175 (2%)
Frame = +3

Query: 45 MSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLA--LSNGSRISAMLVWK 212
M++S+ SA Q+ F+GLK++ F K N + SNG R++ M VW
Sbjct: 1 MASSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWP 60

Query: 213 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGR 389
P KKFETLSYLP L+ ++AK+VDY++R + PC+EF+ G VYREH + GYYDGR
Sbjct: 61 PIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGR 120

Query: 390 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 554
YW MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD RQVQ F+ KP
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small chain
1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B
PE=1 SV=1
Length = 181

Score = 184 bits (468), Expect = 3e-46
Identities = 91/175 (52%), Positives = 117/175 (66%), Gaps = 5/175 (2%)
Frame = +3

Query: 45 MSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLA--LSNGSRISAMLVWK 212
M++S+ SA Q+ F+GLK++ F + K N + SNG R+S M VW
Sbjct: 1 MASSMLSSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWP 60

Query: 213 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGR 389
P KKFETLSYLP L+ ++AK+VDY++R + PC+EF+ G VYREH + GYYDGR
Sbjct: 61 PIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR 120

Query: 390 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 554
YW MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD RQVQ F+ KP
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small chain
2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B
PE=2 SV=2
Length = 181

Score = 184 bits (467), Expect = 4e-46
Identities = 92/179 (51%), Positives = 120/179 (67%), Gaps = 5/179 (2%)
Frame = +3

Query: 33 AMATMSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLA--LSNGSRISAM 200
A + S++ V++P+ Q+ F+GLK++ F + K N + SNG R+S M
Sbjct: 2 ASSMFSSTAVVTSPA-----QATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCM 56

Query: 201 LVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGY 377
VW P KKFETLSYLP LS ++AK+VDY++R + PC+EF+ G VYREH + GY
Sbjct: 57 KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 116

Query: 378 YDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 554
YDGRYW MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD RQVQ F+ KP
Sbjct: 117 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small chain
3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B
PE=1 SV=2
Length = 181

Score = 183 bits (465), Expect = 7e-46
Identities = 91/175 (52%), Positives = 116/175 (66%), Gaps = 5/175 (2%)
Frame = +3

Query: 45 MSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLA--LSNGSRISAMLVWK 212
M++S+ SA Q+ F+GLK++ F + K + SNG R+S M VW
Sbjct: 1 MASSMLSSAAVVTSPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWP 60

Query: 213 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGR 389
P KKFETLSYLP LS ++AK+VDY++R + PC+EF+ G VYREH + GYYDGR
Sbjct: 61 PIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR 120

Query: 390 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 554
YW MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD RQVQ F+ KP
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
Length = 171

Score = 183 bits (464), Expect = 9e-46
Identities = 86/156 (55%), Positives = 110/156 (70%), Gaps = 8/156 (5%)
Frame = +3

Query: 111 SFSGLKATTLF--ALKCGNPLA------LSNGSRISAMLVWKPYDNKKFETLSYLPQLSS 266
+F+GLK+T F + K N A SNG R+ M VW P+ N KFETLSYLP L+
Sbjct: 15 AFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTE 74

Query: 267 EQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYDGRYWVMWKLPMFGCTDSAAVL 446
EQ+ K+V+Y++R + PC+EFD GS+ R++ GYYDGRYWVMWKLPMFGCT+++ V+
Sbjct: 75 EQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVI 134

Query: 447 REITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 554
E+ ECAK YPKAFIRV+GFD RQVQ F+V KP
Sbjct: 135 NEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1
Length = 189

Score = 183 bits (464), Expect = 9e-46
Identities = 92/182 (50%), Positives = 123/182 (67%), Gaps = 8/182 (4%)
Frame = +3

Query: 33 AMATMSASLAVSAPSCPPAEQSLSQKSFSGLKATTLF--ALKCGNPLA------LSNGSR 188
A+++ +A AV+APS +S +F+GLK+ F + N A SNGSR
Sbjct: 7 ALSSTAAVAAVAAPSKTGNSNVVS--AFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSR 64

Query: 189 ISAMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG 368
+ M VW PY NKKFETLSYLP+L+ EQ+ K+V+Y+++ + PC+EF+ G + R + +
Sbjct: 65 VRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKRVYGNS 124

Query: 369 SGYYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQ 548
GYYDGRYWVMWKLPMFGCT+++ VL E+ ECAK YP AFIRV+GFD RQVQ F+V
Sbjct: 125 PGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVH 184

Query: 549 KP 554
KP
Sbjct: 185 KP 186


>sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2
Length = 181

Score = 182 bits (463), Expect = 1e-45
Identities = 89/175 (50%), Positives = 116/175 (66%), Gaps = 5/175 (2%)
Frame = +3

Query: 45 MSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLA--LSNGSRISAMLVWK 212
M++S+ SA Q+ F+GLK+++ F + K N + +SNG R+S M VW
Sbjct: 1 MASSMLSSAAVVTSPAQATMVAPFTGLKSSSAFPVTRKANNDITSIVSNGGRVSCMKVWP 60

Query: 213 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGR 389
P KKFETLSYLP L+ ++ K+VDY++R + PC+EF+ G VYREH GYYDGR
Sbjct: 61 PVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGR 120

Query: 390 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 554
YW MWKLP+FGCTDSA VL+E+ EC EYP AFIR++GFD RQVQ F+ KP
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKP 175


>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain
2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1
Length = 180

Score = 182 bits (461), Expect = 2e-45
Identities = 90/176 (51%), Positives = 122/176 (69%), Gaps = 4/176 (2%)
Frame = +3

Query: 39 ATMSASLAVSAPSCPPAEQSLSQKSFSGLKATTLF-ALKCGNPLA--LSNGSRISAMLVW 209
+++ +S AV+ S PA+ S+ F+GLK+T F A K + + SNG R+ M VW
Sbjct: 3 SSVLSSAAVATVSRTPAQASMVAP-FTGLKSTVGFPATKKNDDITSLASNGGRVQCMKVW 61

Query: 210 KPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDG 386
+ K++ETLSYLP L+++Q+A+QVDY++ + PC+EF+ + G VYREH + GYYDG
Sbjct: 62 PTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDG 121

Query: 387 RYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 554
RYW MWKLPMFGCTD A VL E+ EC KEYP AFIR++GFD+ RQVQ F+ KP
Sbjct: 122 RYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKP 177


tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 175
Score (bit) 305.0
E-value 3.0e-81
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950576|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_A20, 5'
(729 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c... 305 3e-81
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c... 215 2e-54
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c... 212 2e-53
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c... 211 4e-53
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c... 210 9e-53
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c... 210 9e-53
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c... 207 6e-52
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c... 197 6e-49
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c... 195 2e-48
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c... 195 3e-48
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c... 194 4e-48
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c... 194 5e-48
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c... 193 1e-47
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c... 192 2e-47
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c... 192 2e-47
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c... 191 3e-47
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c... 191 3e-47
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c... 191 3e-47
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c... 191 4e-47
tr|A9NMJ1|A9NMJ1_PICSI Ribulose bisphosphate carboxylase small c... 191 4e-47
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c... 190 9e-47
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c... 189 2e-46
tr|A9NL36|A9NL36_PICSI Ribulose bisphosphate carboxylase small c... 189 2e-46
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c... 187 8e-46
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c... 186 1e-45
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c... 186 1e-45
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c... 186 2e-45
tr|A9NM29|A9NM29_PICSI Ribulose bisphosphate carboxylase small c... 186 2e-45
tr|A9NLD6|A9NLD6_PICSI Ribulose bisphosphate carboxylase small c... 186 2e-45
tr|A9NKU8|A9NKU8_PICSI Ribulose bisphosphate carboxylase small c... 186 2e-45

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
Length = 174

Score = 305 bits (780), Expect = 3e-81
Identities = 147/175 (84%), Positives = 160/175 (91%)
Frame = +3

Query: 36 MATMSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWKP 215
MATM A++AVSAPSC A +SLS KSFSGLKA TLFA KC NPLA+SNGSRISAMLVWKP
Sbjct: 1 MATMLAAMAVSAPSCAAAAESLS-KSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKP 59

Query: 216 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYDGRYW 395
YDNKKFETLSYLP L+++QIAKQV+YMVR+ +TPCIEFD IGSVYREHFHGSGYYDGRYW
Sbjct: 60 YDNKKFETLSYLPPLTNDQIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYW 119

Query: 396 VMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKPGQ 560
+MWKLPMFGCTDS +VLREI ECAKEYP AFIRVLGFDAKRQVQVAGFLV+KP Q
Sbjct: 120 IMWKLPMFGCTDSGSVLREIAECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPSQ 174


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_87740 PE=3 SV=1
Length = 179

Score = 215 bits (548), Expect = 2e-54
Identities = 103/177 (58%), Positives = 126/177 (71%), Gaps = 3/177 (1%)
Frame = +3

Query: 33 AMATMSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWK 212
A A +S S+ +A +S S K FSGLK+TTLFA K ++ NGSR+ M VW
Sbjct: 2 ASAVVSVSIVAAASPAAVCRESSSVKQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWN 61

Query: 213 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYD 383
P KFET SYLP L+ +QIAKQVD+M++QN PCIEFD +GSV R +F G SGYYD
Sbjct: 62 PIGQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYD 121

Query: 384 GRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 554
GRYW MWKLPMFGCTDSA VLREI EC + +P ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 122 GRYWTMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARP 178


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_87752 PE=3 SV=1
Length = 179

Score = 212 bits (540), Expect = 2e-53
Identities = 102/177 (57%), Positives = 125/177 (70%), Gaps = 3/177 (1%)
Frame = +3

Query: 33 AMATMSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWK 212
A A +S S+ +A +S S K FSGLK+TTL A K ++ NGSR+ M VW
Sbjct: 2 ASAVVSVSIVAAASPASVCRESSSVKQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWN 61

Query: 213 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYD 383
P KFET SYLP L+ +QIAKQVD+M++QN PCIEFD +GSV R +F G SGYYD
Sbjct: 62 PIGQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYD 121

Query: 384 GRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 554
GRYW MWKLPMFGCTDSA VLREI EC + +P ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 122 GRYWTMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARP 178


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_221004 PE=3 SV=1
Length = 184

Score = 211 bits (537), Expect = 4e-53
Identities = 100/170 (58%), Positives = 123/170 (72%), Gaps = 3/170 (1%)
Frame = +3

Query: 54 SLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWKPYDNKKF 233
SL +A S + +S + K+FSGLK TLF+ K A+ NGSR+ M VW P KF
Sbjct: 14 SLGAAASSVAASNESATVKAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKF 73

Query: 234 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 404
ET SYLP L+ +QIAKQVDYM++QN PCIEFD +GSV R +F G SGYYDGRYW MW
Sbjct: 74 ETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 133

Query: 405 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 554
KLPMFGCTDS+ VLREI EC ++P ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 134 KLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRP 183


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
Length = 214

Score = 210 bits (534), Expect = 9e-53
Identities = 103/176 (58%), Positives = 126/176 (71%), Gaps = 3/176 (1%)
Frame = +3

Query: 36 MATMSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWKP 215
+A AS V APS +S S K+FSGLK+ TLF+ K ++ NGSR+ M VW P
Sbjct: 43 VALGGASSCVGAPS-----ESSSVKAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNP 97

Query: 216 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDG 386
KFET SYLP L+ +QIAKQVDYM++QN PCIEFD +GSV R +F G SGYYDG
Sbjct: 98 IGQPKFETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDG 157

Query: 387 RYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 554
RYW MWKLPMFGCTDS+ VLREI EC ++P ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 158 RYWTMWKLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRP 213


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
PE=2 SV=1
Length = 184

Score = 210 bits (534), Expect = 9e-53
Identities = 99/170 (58%), Positives = 123/170 (72%), Gaps = 3/170 (1%)
Frame = +3

Query: 54 SLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWKPYDNKKF 233
S+ V++ S + +S S K+FSGLK+ TLF K ++ NGSR+ M VW P KF
Sbjct: 14 SVTVASSSVAASRESSSVKAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKF 73

Query: 234 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 404
ET SYLP LS +QIA+QVDYM++QN PCIEFD +G+V R +F G SGYYDGRYW MW
Sbjct: 74 ETFSYLPPLSDDQIARQVDYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMW 133

Query: 405 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 554
KLPMFGCTDS+ VLREI EC YP ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 134 KLPMFGCTDSSQVLREIQECKTSYPSCWVRVLGFDSKKQVQICGFLVARP 183


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_225236 PE=3 SV=1
Length = 183

Score = 207 bits (527), Expect = 6e-52
Identities = 98/170 (57%), Positives = 125/170 (73%), Gaps = 3/170 (1%)
Frame = +3

Query: 54 SLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWKPYDNKKF 233
SLA ++P+ + S S K+FSGLK+ TLF+ + ++ NGSR+ M VW P KF
Sbjct: 14 SLAAASPAAV-SRDSTSVKAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKF 72

Query: 234 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 404
ET SYLP L+ ++IAKQVDYM++QN PCIEFD +GSV R +F G SGYYDGRYW MW
Sbjct: 73 ETFSYLPPLTDDEIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 132

Query: 405 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 554
KLPMFGCTDS+ VLREI EC ++P ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 133 KLPMFGCTDSSQVLREIQECKTQFPSCWVRVLGFDSKKQVQICGFLVSRP 182


>tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small
chain (Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_152025 PE=3 SV=1
Length = 183

Score = 197 bits (501), Expect = 6e-49
Identities = 98/181 (54%), Positives = 119/181 (65%), Gaps = 7/181 (3%)
Frame = +3

Query: 33 AMATMSASLAVSAP-------SCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRI 191
AMA++ A+ V AP S +S S K+FSGLK+ TLF+ K ++ NGSR+
Sbjct: 2 AMASIVAATTVVAPTAFAAASSAVSTSESSSVKAFSGLKSNTLFSSKAQTLSSVQNGSRV 61

Query: 192 SAMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGS 371
M VW P KFET SYLP LS + IAKQV+YM++Q PC+EFDN V R +
Sbjct: 62 QCMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSP 121

Query: 372 GYYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQK 551
GYYDGRYW MWKLPMFGC DSA VLREI EC K +P F+RVLGFD +QVQ+ GFLV +
Sbjct: 122 GYYDGRYWTMWKLPMFGCNDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVAR 181

Query: 552 P 554
P
Sbjct: 182 P 182


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_146969 PE=3 SV=1
Length = 181

Score = 195 bits (496), Expect = 2e-48
Identities = 97/180 (53%), Positives = 119/180 (66%), Gaps = 7/180 (3%)
Frame = +3

Query: 36 MATMSASLAVSAP-------SCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRIS 194
MA++ A+ V AP S +S S K+FSGLK++TLF+ K + ++ NGSR+
Sbjct: 1 MASVVATSTVVAPAAFAASSSAVSTSESTSVKAFSGLKSSTLFSSKAQSLSSVQNGSRVQ 60

Query: 195 AMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSG 374
M VW P KFET SYLP LS + IAKQVDYM++Q PC+EFDN V R + G
Sbjct: 61 CMQVWNPIGMTKFETFSYLPPLSDDAIAKQVDYMIQQKLIPCLEFDNADGVSRTNNSSPG 120

Query: 375 YYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 554
YYDGRYW MWKLPMFGC D A VLREI EC K +P F+RVLGFD +QVQ+ GFLV +P
Sbjct: 121 YYDGRYWTMWKLPMFGCQDPAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARP 180


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_115069 PE=3 SV=1
Length = 181

Score = 195 bits (495), Expect = 3e-48
Identities = 99/180 (55%), Positives = 120/180 (66%), Gaps = 7/180 (3%)
Frame = +3

Query: 36 MATMSASLAVSAPSC-----PPAEQSLSQ--KSFSGLKATTLFALKCGNPLALSNGSRIS 194
MA+ A+ AV AP+ P A S S K+FSGLK+ T+F+ K N ++ NGSR+
Sbjct: 1 MASTVAASAVVAPTAFAAASPAASTSGSTTVKAFSGLKSATVFSGKAQNSSSVQNGSRVQ 60

Query: 195 AMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSG 374
M VW P KFET SYLP LS + IAKQV+YM++Q PC+EFDN V R + G
Sbjct: 61 CMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSPG 120

Query: 375 YYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 554
YYDGRYW MWKLPMFGC DSA VLREI EC K +P F+RVLGFD +QVQ+ GFLV +P
Sbjct: 121 YYDGRYWTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARP 180