DK950604 |
Clone id |
TST38A01NGRL0009_C01 |
Library |
TST38 |
Length |
619 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_C01. 5' end sequence. |
Accession |
DK950604 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL376Contig1 |
Sequence |
GATCTGGTGTCGCGGAATCGATACGGCGAGCATGGCTACTGCAGGGGCAGCGAATTCTGT AGTGCCGAGGAATAGGACAAACCCCCGCAATGGGGGGCTTGACGATGATAGTATGGCGTT TGAGACGAGTCCCGGGGTGGAAGTATACAGCACGTTCGACAGCATGGGCATTCGAGATGA GCTTCTTCGTGGAATCTATGCCTATGGTTTTGAAAAACCTTCAGCTATTCAGCAGCGTGC CATACGGCCCATCATCCAGAATCGTGATGTCATAGCGCAGGCCCAGTCTGGTACTGGGAA GACTTCCATGATTGCCCTTGCTGTGTGCCAAATTATCGACACAACTGTTAGAGAGGTGCA GGCTTTATTCCTATCCCCCACTAGAGAGCTGGCAGCTCAGACTGAAAAGAGAAGGTTAGC CATTGGTGATTATATAAATGTGCGGGCCCATTCTTGCATTGGTGGTAAAAACATTGGGGA GGATATAAGAAAGCTTGAGAACGGTGTCCATGTGGTCTCTGGAACGCCAGGAAGGGTTTA TGACATGATAAAAAGGAGGACTTTAGGAACAAGGGCCATGAAGCTTCTTGTCCTTGATGA ATCAGATGAAATGCTGAGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q10I26 |
Definition |
sp|Q10I26|RH34_ORYSJ DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sativa subsp. japonica |
Align length |
175 |
Score (bit) |
265.0 |
E-value |
1.0e-70 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QFA1 |
Definition |
tr|A7QFA1|A7QFA1_VITVI Chromosome undetermined scaffold_87, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
193 |
Score (bit) |
270.0 |
E-value |
5.0e-71 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950604|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0009_C01, 5' (619 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QFA1|A7QFA1_VITVI Chromosome undetermined scaffold_87, whol... 270 5e-71 tr|A9NUU4|A9NUU4_PICSI Putative uncharacterized protein OS=Picea... 269 1e-70 tr|B7EMG9|B7EMG9_ORYSJ cDNA clone:J033052B21, full insert sequen... 265 2e-69 tr|A3AJN1|A3AJN1_ORYSJ Putative uncharacterized protein OS=Oryza... 265 2e-69 tr|A2ZVV2|A2ZVV2_ORYSJ Putative uncharacterized protein OS=Oryza... 265 2e-69 tr|B8AKV8|B8AKV8_ORYSI Putative uncharacterized protein OS=Oryza... 263 6e-69 tr|Q2MJJ9|Q2MJJ9_MAIZE Putative RH2 protein (RNA helicase 2) (Pu... 261 3e-68 tr|B5AKW1|B5AKW1_PENAM eIF-4A OS=Pennisetum americanum PE=2 SV=1 259 1e-67 tr|A9TNS6|A9TNS6_PHYPA Predicted protein OS=Physcomitrella paten... 256 6e-67 tr|O65879|O65879_PEA Translation initiation factor OS=Pisum sati... 254 2e-66 tr|A8DX61|A8DX61_MEDSA DH OS=Medicago sativa PE=2 SV=1 254 3e-66 tr|A9U4K0|A9U4K0_PHYPA Predicted protein OS=Physcomitrella paten... 253 8e-66 tr|A5C5V5|A5C5V5_VITVI Putative uncharacterized protein OS=Vitis... 246 1e-63 tr|A8JBN7|A8JBN7_CHLRE Eukaryotic initiation factor OS=Chlamydom... 236 8e-61 tr|A4S618|A4S618_OSTLU Predicted protein OS=Ostreococcus lucimar... 234 4e-60 tr|A8D930|A8D930_9GENT ATP-dependent DEAD-box helicase OS=Apocyn... 232 1e-59 tr|Q00XK3|Q00XK3_OSTTA Putative nicotiana eukaryotic (ISS) OS=Os... 231 2e-59 tr|A2WT17|A2WT17_ORYSI Putative uncharacterized protein OS=Oryza... 231 2e-59 tr|Q3B8Q2|Q3B8Q2_RAT Similar to DEAD (Asp-Glu-Ala-Asp) box polyp... 222 2e-56 tr|A6M931|A6M931_PIG Eukaryotic translation initiation factor 4A... 222 2e-56 tr|B3SAG4|B3SAG4_TRIAD DEAD box ATP-dependent RNA helicase OS=Tr... 222 2e-56 tr|Q6IBQ2|Q6IBQ2_HUMAN DDX48 protein OS=Homo sapiens GN=DDX48 PE... 222 2e-56 tr|B7QER9|B7QER9_IXOSC DEAD box ATP-dependent RNA helicase, puta... 221 2e-56 tr|B6PI66|B6PI66_BRAFL Putative uncharacterized protein (Fragmen... 221 2e-56 tr|B6MJV0|B6MJV0_BRAFL Putative uncharacterized protein OS=Branc... 221 2e-56 tr|Q0PZE7|Q0PZE7_BOMMO EIF4AIII protein OS=Bombyx mori PE=2 SV=1 221 4e-56 tr|Q16GE2|Q16GE2_AEDAE DEAD box ATP-dependent RNA helicase OS=Ae... 220 5e-56 tr|A8WW00|A8WW00_CAEBR Putative uncharacterized protein OS=Caeno... 220 5e-56 tr|Q3UD29|Q3UD29_MOUSE Eukaryotic translation initiation factor ... 219 8e-56 tr|Q3TEZ8|Q3TEZ8_MOUSE Putative uncharacterized protein OS=Mus m... 219 8e-56
>tr|A7QFA1|A7QFA1_VITVI Chromosome undetermined scaffold_87, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037338001 PE=4 SV=1 Length = 415
Score = 270 bits (690), Expect = 5e-71 Identities = 138/193 (71%), Positives = 157/193 (81%) Frame = +2
Query: 41 AGAANSVVPRNRTNPRNGGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKP 220 A A SVVP NR RNG +DD+ + FET+ GVE +FD MGI+D+LLRGIYAYGFEKP Sbjct: 3 AAATASVVPANRGGRRNGAVDDEKLVFETTEGVEPIMSFDQMGIKDDLLRGIYAYGFEKP 62
Query: 221 SXXXXXXXXXXXXNRDVIAQAQSGTGKTSMIALAVCQIIDTTVREVQALFLSPTRELAAQ 400 S RDVIAQAQSGTGKTSMIAL VCQ++DT+ REVQAL LSPTRELA+Q Sbjct: 63 SAIQQRAVLPIIQGRDVIAQAQSGTGKTSMIALTVCQMVDTSNREVQALILSPTRELASQ 122
Query: 401 TEKRRLAIGDYINVRAHSCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAM 580 TEK LAIGD+IN++AH+CIGGK++GEDIRKLE GVH+VSGTPGRV DMIKRRTL TRA+ Sbjct: 123 TEKVILAIGDFINIQAHACIGGKSVGEDIRKLEYGVHIVSGTPGRVCDMIKRRTLRTRAI 182
Query: 581 KLLVLDESDEMLS 619 KLLVLDESDEMLS Sbjct: 183 KLLVLDESDEMLS 195
>tr|A9NUU4|A9NUU4_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 408
Score = 269 bits (687), Expect = 1e-70 Identities = 142/184 (77%), Positives = 155/184 (84%) Frame = +2
Query: 68 RNRTNPRNGGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXX 247 RNR N RN D+++ FETSPGVEV S+FD MGIRD+LLRGIY YGFEKPS Sbjct: 9 RNRNNGRNPD-GDENLIFETSPGVEVISSFDQMGIRDDLLRGIYQYGFEKPSAIQQRAVM 67
Query: 248 XXXXNRDVIAQAQSGTGKTSMIALAVCQIIDTTVREVQALFLSPTRELAAQTEKRRLAIG 427 RDVIAQAQSGTGKTSMIALAVCQIIDT++REVQAL +SPTRELAAQTEK LAIG Sbjct: 68 PIINGRDVIAQAQSGTGKTSMIALAVCQIIDTSIREVQALIVSPTRELAAQTEKVILAIG 127
Query: 428 DYINVRAHSCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLDESD 607 D+INV+AH+CIGGK+IGEDIRKLE GVHVVSGTPGRV DMIKRRTL TRA+KLLVLDESD Sbjct: 128 DFINVQAHACIGGKSIGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAVKLLVLDESD 187
Query: 608 EMLS 619 EMLS Sbjct: 188 EMLS 191
>tr|B7EMG9|B7EMG9_ORYSJ cDNA clone:J033052B21, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 404
Score = 265 bits (677), Expect = 2e-69 Identities = 132/175 (75%), Positives = 151/175 (86%) Frame = +2
Query: 92 GGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXXXXXXNRDV 271 G +DD+++ FETSPGVEV S+FD MGIRD+LLRGIYAYGFEKPS RDV Sbjct: 12 GAMDDENLTFETSPGVEVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDV 71
Query: 272 IAQAQSGTGKTSMIALAVCQIIDTTVREVQALFLSPTRELAAQTEKRRLAIGDYINVRAH 451 IAQAQSGTGKTSMI+L+VCQI+DT VREVQAL LSPTRELAAQTE+ LAIGD+IN++ H Sbjct: 72 IAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVH 131
Query: 452 SCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLDESDEML 616 +CIGGK+IGEDIRKLE+GVHVVSGTPGRV DMIKRRTL TRA+KLL+LDE+DEML Sbjct: 132 ACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEML 186
>tr|A3AJN1|A3AJN1_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_011003 PE=3 SV=1 Length = 394
Score = 265 bits (677), Expect = 2e-69 Identities = 132/175 (75%), Positives = 151/175 (86%) Frame = +2
Query: 92 GGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXXXXXXNRDV 271 G +DD+++ FETSPGVEV S+FD MGIR++LLRGIYAYGFEKPS RDV Sbjct: 12 GAMDDENLTFETSPGVEVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDV 71
Query: 272 IAQAQSGTGKTSMIALAVCQIIDTTVREVQALFLSPTRELAAQTEKRRLAIGDYINVRAH 451 IAQAQSGTGKTSMI+L+VCQI+DT VREVQAL LSPTRELAAQTE+ LAIGDYIN++ H Sbjct: 72 IAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDYINIQVH 131
Query: 452 SCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLDESDEML 616 +CIGGK+IGEDIRKLE+GVHVVSGTPGRV DMIKRRTL TRA+KLL+LDE+DEML Sbjct: 132 ACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEML 186
>tr|A2ZVV2|A2ZVV2_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_002674 PE=3 SV=1 Length = 394
Score = 265 bits (677), Expect = 2e-69 Identities = 132/175 (75%), Positives = 151/175 (86%) Frame = +2
Query: 92 GGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXXXXXXNRDV 271 G +DD+++ FETSPGVEV S+FD MGIRD+LLRGIYAYGFEKPS RDV Sbjct: 12 GAMDDENLTFETSPGVEVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDV 71
Query: 272 IAQAQSGTGKTSMIALAVCQIIDTTVREVQALFLSPTRELAAQTEKRRLAIGDYINVRAH 451 IAQAQSGTGKTSMI+L+VCQI+DT VREVQAL LSPTRELAAQTE+ LAIGD+IN++ H Sbjct: 72 IAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVH 131
Query: 452 SCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLDESDEML 616 +CIGGK+IGEDIRKLE+GVHVVSGTPGRV DMIKRRTL TRA+KLL+LDE+DEML Sbjct: 132 ACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEML 186
>tr|B8AKV8|B8AKV8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_12293 PE=4 SV=1 Length = 404
Score = 263 bits (672), Expect = 6e-69 Identities = 131/175 (74%), Positives = 151/175 (86%) Frame = +2
Query: 92 GGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXXXXXXNRDV 271 G +DD+++ FETSPGVEV S+FD MGIR++LLRGIYAYGFEKPS RDV Sbjct: 12 GAMDDENLTFETSPGVEVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDV 71
Query: 272 IAQAQSGTGKTSMIALAVCQIIDTTVREVQALFLSPTRELAAQTEKRRLAIGDYINVRAH 451 IAQAQSGTGKTSMI+L+VCQI++T VREVQAL LSPTRELAAQTE+ LAIGDYIN++ H Sbjct: 72 IAQAQSGTGKTSMISLSVCQIVNTAVREVQALILSPTRELAAQTERVMLAIGDYINIQVH 131
Query: 452 SCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLDESDEML 616 +CIGGK+IGEDIRKLE+GVHVVSGTPGRV DMIKRRTL TRA+KLL+LDE+DEML Sbjct: 132 ACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEML 186
>tr|Q2MJJ9|Q2MJJ9_MAIZE Putative RH2 protein (RNA helicase 2) (Putative uncharacterized protein) OS=Zea mays GN=RH2 PE=2 SV=1 Length = 407
Score = 261 bits (666), Expect = 3e-68 Identities = 135/191 (70%), Positives = 155/191 (81%) Frame = +2
Query: 47 AANSVVPRNRTNPRNGGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSX 226 AA + R RN +DD+++ FETSPGVEV S+FD MGI+D+LLRGIY YGFEKPS Sbjct: 2 AAPTTSRRGPGGARN--MDDENLTFETSPGVEVVSSFDQMGIKDDLLRGIYGYGFEKPSA 59
Query: 227 XXXXXXXXXXXNRDVIAQAQSGTGKTSMIALAVCQIIDTTVREVQALFLSPTRELAAQTE 406 RDVIAQAQSGTGKTSMI+L VCQI+DT VREVQAL LSPTRELA+QTE Sbjct: 60 IQQRAVLPIINGRDVIAQAQSGTGKTSMISLTVCQIVDTAVREVQALILSPTRELASQTE 119
Query: 407 KRRLAIGDYINVRAHSCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKL 586 + LAIGD++NV+ H+CIGGK+IGEDIR+LENGVHVVSGTPGRV DMIKRRTL TRA+KL Sbjct: 120 RVMLAIGDHLNVQVHACIGGKSIGEDIRRLENGVHVVSGTPGRVCDMIKRRTLRTRAIKL 179
Query: 587 LVLDESDEMLS 619 LVLDE+DEMLS Sbjct: 180 LVLDEADEMLS 190
>tr|B5AKW1|B5AKW1_PENAM eIF-4A OS=Pennisetum americanum PE=2 SV=1 Length = 407
Score = 259 bits (661), Expect = 1e-67 Identities = 128/174 (73%), Positives = 148/174 (85%) Frame = +2
Query: 98 LDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXXXXXXNRDVIA 277 +DD+++ FETSPGVEV S+FD MGI+D+LLRGIY YGFEKPS RDVIA Sbjct: 17 MDDENLTFETSPGVEVVSSFDQMGIKDDLLRGIYGYGFEKPSAIQQRAVLPIINGRDVIA 76
Query: 278 QAQSGTGKTSMIALAVCQIIDTTVREVQALFLSPTRELAAQTEKRRLAIGDYINVRAHSC 457 QAQSGTGK+SMI+L VCQI+DT VREVQAL LSPTRELA+QTEK LA+GDY+N++ H+C Sbjct: 77 QAQSGTGKSSMISLTVCQIVDTAVREVQALILSPTRELASQTEKVMLAVGDYLNIQVHAC 136
Query: 458 IGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLDESDEMLS 619 IGGK+I EDIR+LENGVHVVSGTPGRV DMIKRRTL TRA+KLLVLDE+DEMLS Sbjct: 137 IGGKSISEDIRRLENGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDEADEMLS 190
>tr|A9TNS6|A9TNS6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_60709 PE=4 SV=1 Length = 397
Score = 256 bits (655), Expect = 6e-67 Identities = 131/173 (75%), Positives = 147/173 (84%) Frame = +2
Query: 101 DDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXXXXXXNRDVIAQ 280 + +++ FETS GVEV S+FD MGIR++LLRGIYAYGFEKPS RD IAQ Sbjct: 8 EGENLVFETSAGVEVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVMPIISGRDAIAQ 67
Query: 281 AQSGTGKTSMIALAVCQIIDTTVREVQALFLSPTRELAAQTEKRRLAIGDYINVRAHSCI 460 AQSGTGKTSMIALAVCQ+IDT REVQAL LSPTRELAAQTEK LAIGD++NV+AH+CI Sbjct: 68 AQSGTGKTSMIALAVCQMIDTATREVQALILSPTRELAAQTEKVILAIGDFMNVQAHACI 127
Query: 461 GGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLDESDEMLS 619 GGK+IGEDIRKLE GVHVVSGTPGRVYDMIKRRTL TR++KLL+LDESDEMLS Sbjct: 128 GGKSIGEDIRKLEYGVHVVSGTPGRVYDMIKRRTLRTRSIKLLILDESDEMLS 180
>tr|O65879|O65879_PEA Translation initiation factor OS=Pisum sativum GN=eIF-4A PE=2 SV=1 Length = 407
Score = 254 bits (650), Expect = 2e-66 Identities = 132/191 (69%), Positives = 154/191 (80%) Frame = +2
Query: 47 AANSVVPRNRTNPRNGGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSX 226 A SVVP NR + ++ M FET+ GV+ +TF+ MGI+++LLRGIYAYGFEKPS Sbjct: 2 ATTSVVPANRGRTV---ISNEDMDFETTEGVKAIATFEGMGIKEDLLRGIYAYGFEKPSA 58
Query: 227 XXXXXXXXXXXNRDVIAQAQSGTGKTSMIALAVCQIIDTTVREVQALFLSPTRELAAQTE 406 RDVIAQAQSGTGKTSMIAL VCQ++DT+VREVQAL +SPTRELA QTE Sbjct: 59 IQQRAVAPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSVREVQALIVSPTRELATQTE 118
Query: 407 KRRLAIGDYINVRAHSCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKL 586 K LAIGD+IN++AH+CIGGK++GEDIRKLE+GVHVVSGTPGRV DMIKRRTL TRA+KL Sbjct: 119 KVILAIGDHINIQAHACIGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKL 178
Query: 587 LVLDESDEMLS 619 LVLDESDEMLS Sbjct: 179 LVLDESDEMLS 189
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