NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950607
Clone id TST38A01NGRL0009_C04
Library
Length 676
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_C04. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
GGATCTCAGGTCGAAAAATGATGAGGCCCTTACCTTCAGAAGTAGAAATGGTATCGACTC
ATGAACCAGGGTCTGCTGTTGATGTGTGGGGAGGTGAAGGCTGGTGGGAGGGTATAATGG
TAGGAAGGAATGCCTCTGGACAAGTCAAAGTTGCTTTTCCTGCGGAGGAGTACACCGCCT
GGTTTGAAGAGTCTAAGGTTCGTATTTCAAGGGAGTGGTTTGATGGCCAGTGGCTAGCAG
TTCAACCCAATGCAAACACCATCGACAAAAATCTGGGCTTGCATAGCAATAGTCAGGAGA
AGGATAGAAATAGTTCTCCTGAATTCCAACGAGGTTGGGAAGCTGCATCTCAATCCCCCC
TCCCGGGAGTTGAAGACAGAAAGGTCATGCTACCAGATCGAGGGTTTAAGCAGCTGGTTG
CCGCAAGCTTTCCCGCAAATAAATATTCAGCCTGCCCAATTGAAGGGCTTTCTACTGATC
AAGCTCTAGAAAATCCTCCAGAAAAGGGAAAATGTCTATCCTCTCTTCACAAAGCTGCAA
CCCACCAAACTGTGACACAATCACCAATTTTATCATATTGTAAAGGTAGCACGAACCTGC
CTAACCATTGCAACAAGTATTTGGGAAAGGTTGCAGAGGCCACACCATTTGGTCTTGAAG
ATTTGAATAGCAAATG
■■Homology search results ■■ -
sp_hit_id Q3AQY2
Definition sp|Q3AQY2|ISPE_CHLCH 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Chlorobium chlorochromatii (strain CaD3)
Align length 54
Score (bit) 33.9
E-value 0.81
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950607|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_C04, 5'
         (676 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3AQY2|ISPE_CHLCH 4-diphosphocytidyl-2-C-methyl-D-erythritol ...    34   0.81 
sp|Q92734|TFG_HUMAN Protein TFG OS=Homo sapiens GN=TFG PE=1 SV=2       31   6.8  
sp|P22877|INTR_SACER Integrase OS=Saccharopolyspora erythraea GN...    31   6.8  
sp|P10354|CMGA_RAT Chromogranin-A OS=Rattus norvegicus GN=Chga P...    31   6.8  
sp|P26339|CMGA_MOUSE Chromogranin-A OS=Mus musculus GN=Chga PE=1...    31   6.8  

>sp|Q3AQY2|ISPE_CHLCH 4-diphosphocytidyl-2-C-methyl-D-erythritol
           kinase OS=Chlorobium chlorochromatii (strain CaD3)
           GN=ispE PE=3 SV=1
          Length = 288

 Score = 33.9 bits (76), Expect = 0.81
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +3

Query: 243 QPNANTIDKNLGLHSNSQEKDRNSSPEFQRGWEAASQSPLPGVEDRKVMLPDRG 404
           +PN NT+ KNL    N+     ++ P F+  +EAA     P V D K ML + G
Sbjct: 189 RPNLNTLVKNLCTTGNT-----SALPSFENDFEAAVFDHFPTVRDVKTMLMENG 237


>sp|Q92734|TFG_HUMAN Protein TFG OS=Homo sapiens GN=TFG PE=1 SV=2
          Length = 400

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 285 SNSQEKDRNSSPEFQR-GWEAASQSPLPGVEDRKVMLPDRGFKQLVAASFPANKYSA 452
           S SQ+       +FQ  G +  SQ+P P    +   LP +  +Q  A+++PA  Y+A
Sbjct: 275 SYSQQTGPQQPQQFQGYGQQPTSQAPAPAFSGQPQQLPAQPPQQYQASNYPAQTYTA 331


>sp|P22877|INTR_SACER Integrase OS=Saccharopolyspora erythraea
           GN=int PE=3 SV=1
          Length = 437

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = +3

Query: 126 RNASGQVKVAFPAEEYTAWFEESKVR------ISREWFDGQWLAVQPNANTID 266
           ++ +G+  V  P + +    +  K++         EW DG+W+  QPN   ID
Sbjct: 304 KSRAGRRTVTLPDQLFDLILKHEKLQGAERELAGTEWHDGEWMFTQPNGKPID 356


>sp|P10354|CMGA_RAT Chromogranin-A OS=Rattus norvegicus GN=Chga PE=1
           SV=1
          Length = 466

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
 Frame = +3

Query: 186 EESKVRISREWFDGQWLAVQPNANTI------------DKNLGLHSNSQEKD-RNSSPEF 326
           EE + R+SREW D +W  +   A  +            D+++ L   ++    R+  P+ 
Sbjct: 346 EEEEERLSREWEDKRWSRMDQLAKELTAEKRLEGEDDPDRSMKLSFRARAYGFRDPGPQL 405

Query: 327 QRGWEAASQ 353
           +RGW  +S+
Sbjct: 406 RRGWRPSSR 414


>sp|P26339|CMGA_MOUSE Chromogranin-A OS=Mus musculus GN=Chga PE=1
           SV=1
          Length = 463

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
 Frame = +3

Query: 186 EESKVRISREWFDGQWLAVQPNANTI------------DKNLGLHSNSQEKD-RNSSPEF 326
           EE + R+SREW D +W  +   A  +            D+++ L   ++    R+  P+ 
Sbjct: 343 EEEEERLSREWEDKRWSRMDQLAKELTAEKRLEGEDDPDRSMKLSFRTRAYGFRDPGPQL 402

Query: 327 QRGWEAASQ 353
           +RGW  +S+
Sbjct: 403 RRGWRPSSR 411
tr_hit_id Q9SX21
Definition tr|Q9SX21|Q9SX21_ARATH F24J5.18 protein OS=Arabidopsis thaliana
Align length 133
Score (bit) 49.3
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950607|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_C04, 5'
         (676 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SX21|Q9SX21_ARATH F24J5.18 protein OS=Arabidopsis thaliana ...    49   2e-04
tr|Q8L7Q0|Q8L7Q0_ARATH Putative uncharacterized protein At1g6858...    49   2e-04
tr|A9RX43|A9RX43_PHYPA Predicted protein OS=Physcomitrella paten...    47   8e-04
tr|A7R7D9|A7R7D9_VITVI Chromosome undetermined scaffold_1717, wh...    42   0.027
tr|A7R4U7|A7R4U7_VITVI Chromosome undetermined scaffold_783, who...    42   0.027
tr|Q69J34|Q69J34_ORYSJ cDNA clone:J033106K01, full insert sequen...    42   0.035
tr|Q0D4S5|Q0D4S5_ORYSJ Os07g0607300 protein OS=Oryza sativa subs...    42   0.035
tr|Q6ZKB4|Q6ZKB4_ORYSJ Putative uncharacterized protein OJ1124_B...    41   0.079
tr|Q0J5J1|Q0J5J1_ORYSJ Os08g0431100 protein (Fragment) OS=Oryza ...    41   0.079
tr|A7P367|A7P367_VITVI Chromosome chr1 scaffold_5, whole genome ...    41   0.079
tr|A5B418|A5B418_VITVI Putative uncharacterized protein OS=Vitis...    41   0.079
tr|A3BTD5|A3BTD5_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.079
tr|A2YVG7|A2YVG7_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.079
tr|A2YNJ7|A2YNJ7_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.10 
tr|A7Q958|A7Q958_VITVI Chromosome chr19 scaffold_66, whole genom...    38   0.51 
tr|A5BC10|A5BC10_VITVI Putative uncharacterized protein OS=Vitis...    38   0.51 
tr|Q9ZPZ3|Q9ZPZ3_ARATH T31J12.4 OS=Arabidopsis thaliana GN=T31J1...    37   0.87 
tr|Q67YH5|Q67YH5_ARATH Putative uncharacterized protein At1g0932...    37   0.87 
tr|Q500V5|Q500V5_ARATH At1g09320 OS=Arabidopsis thaliana PE=2 SV=1     37   0.87 
tr|Q69N36|Q69N36_ORYSJ Agenet domain-containing protein / bromo-...    37   1.1  
tr|B5V3Z7|B5V3Z7_BACCE Minor structural protein OS=Bacillus cere...    35   3.3  
tr|Q9FM78|Q9FM78_ARATH Genomic DNA, chromosome 5, P1 clone:MDF20...    35   3.3  
tr|Q8W109|Q8W109_ARATH AT5g55600/MDF20_4 OS=Arabidopsis thaliana...    35   3.3  
tr|B8BF69|B8BF69_ORYSI Putative uncharacterized protein OS=Oryza...    35   3.3  
tr|A9TI19|A9TI19_PHYPA Predicted protein OS=Physcomitrella paten...    35   4.3  
tr|Q5BB61|Q5BB61_EMENI Putative uncharacterized protein OS=Emeri...    35   4.3  
tr|Q97K01|Q97K01_CLOAB Phage-related protein, YqbO B.subtilis ho...    35   5.6  
tr|B0VRR9|B0VRR9_ACIBS Putative uncharacterized protein OS=Acine...    35   5.6  
tr|B0VAX5|B0VAX5_ACIBY Putative uncharacterized protein OS=Acine...    35   5.6  
tr|B7IBX7|B7IBX7_ACIBA Putative VGR-related protein OS=Acinetoba...    35   5.6  

>tr|Q9SX21|Q9SX21_ARATH F24J5.18 protein OS=Arabidopsis thaliana
           GN=F24J5.18 PE=4 SV=1
          Length = 625

 Score = 49.3 bits (116), Expect = 2e-04
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
 Frame = +3

Query: 3   ISGRKMMRPL--PSEVEMVSTHEPGSAVDVXXXXXXXXXIMVGRNASGQVKVAFPAEEYT 176
           I GRK++RP+  PS+   V     G  VDV         I+V   +  + +V  P E+  
Sbjct: 409 IKGRKVVRPMLKPSKENDVCVIGVGMPVDVWWCDGWWEGIVVQEVSEEKFEVYLPGEKKM 468

Query: 177 AWFEESKVRISREWFDGQWLAVQPNANTIDKNLGLHSNSQEKDRNSSPEFQRGWEAASQS 356
           + F  + +R SREW D +WL ++  ++ +   L L    + + ++       G      S
Sbjct: 469 SAFHRNDLRQSREWLDDEWLNIRSRSDIVSSVLSLTKKKEMEVKHDEKSSDVGVCNGRMS 528

Query: 357 PLPGVEDRKVMLP 395
           P    + R + LP
Sbjct: 529 PKTEAK-RTISLP 540


>tr|Q8L7Q0|Q8L7Q0_ARATH Putative uncharacterized protein At1g68580
           (At1g68580) OS=Arabidopsis thaliana GN=At1g68580 PE=2
           SV=1
          Length = 648

 Score = 49.3 bits (116), Expect = 2e-04
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
 Frame = +3

Query: 3   ISGRKMMRPL--PSEVEMVSTHEPGSAVDVXXXXXXXXXIMVGRNASGQVKVAFPAEEYT 176
           I GRK++RP+  PS+   V     G  VDV         I+V   +  + +V  P E+  
Sbjct: 432 IKGRKVVRPMLKPSKENDVCVIGVGMPVDVWWCDGWWEGIVVQEVSEEKFEVYLPGEKKM 491

Query: 177 AWFEESKVRISREWFDGQWLAVQPNANTIDKNLGLHSNSQEKDRNSSPEFQRGWEAASQS 356
           + F  + +R SREW D +WL ++  ++ +   L L    + + ++       G      S
Sbjct: 492 SAFHRNDLRQSREWLDDEWLNIRSRSDIVSSVLSLTKKKEMEVKHDEKSSDVGVCNGRMS 551

Query: 357 PLPGVEDRKVMLP 395
           P    + R + LP
Sbjct: 552 PKTEAK-RTISLP 563


>tr|A9RX43|A9RX43_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_120611 PE=4 SV=1
          Length = 530

 Score = 47.4 bits (111), Expect = 8e-04
 Identities = 24/87 (27%), Positives = 41/87 (47%)
 Frame = +3

Query: 3   ISGRKMMRPLPSEVEMVSTHEPGSAVDVXXXXXXXXXIMVGRNASGQVKVAFPAEEYTAW 182
           ++GR  +RP  S          G AVD          I++ + +SG ++V FP E  T  
Sbjct: 408 VAGRTTVRPFASFNVSAGECNIGQAVDAWWNDGWWEGIIINKESSGDIQVYFPGEGDTCS 467

Query: 183 FEESKVRISREWFDGQWLAVQPNANTI 263
           F+   +R SR+W +  W+ +  N + +
Sbjct: 468 FKIEDLRTSRDWVNDSWIDLLCNPDAV 494


>tr|A7R7D9|A7R7D9_VITVI Chromosome undetermined scaffold_1717, whole
            genome shotgun sequence OS=Vitis vinifera
            GN=GSVIVT00009956001 PE=4 SV=1
          Length = 2059

 Score = 42.4 bits (98), Expect = 0.027
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = +3

Query: 6    SGRKMMRPLPSEVEMVSTHEPGSAVDVXXXXXXXXXIM--VGRNASGQVKVAFPAEEYTA 179
            +GR  +RP P E     T E G+AVD          ++  VG + +  ++V  P E    
Sbjct: 1871 AGRLTIRPFPPEDCTEYTFEVGAAVDAWWGDGWWEGVVTRVGISGNDSLQVYLPGEGKLL 1930

Query: 180  WFEESKVRISREWFDGQWLAVQ 245
             FE+  +R SR+W   +W+ ++
Sbjct: 1931 TFEKKNLRTSRDWVGNKWVELK 1952


>tr|A7R4U7|A7R4U7_VITVI Chromosome undetermined scaffold_783, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00004702001 PE=4 SV=1
          Length = 638

 Score = 42.4 bits (98), Expect = 0.027
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = +3

Query: 6   SGRKMMRPLPSEVEMVSTHEPGSAVDVXXXXXXXXXIM--VGRNASGQVKVAFPAEEYTA 179
           +GR  +RP P E     T E G+AVD          ++  VG + +  ++V  P E    
Sbjct: 450 AGRLTIRPFPPEDCTEYTFEVGAAVDAWWGDGWWEGVVTRVGISGNDSLQVYLPGEGKLL 509

Query: 180 WFEESKVRISREWFDGQWLAVQ 245
            FE+  +R SR+W   +W+ ++
Sbjct: 510 TFEKKNLRTSRDWVGNKWVELK 531


>tr|Q69J34|Q69J34_ORYSJ cDNA clone:J033106K01, full insert sequence
           OS=Oryza sativa subsp. japonica GN=OSJNBa0072I06.22-1
           PE=2 SV=1
          Length = 636

 Score = 42.0 bits (97), Expect = 0.035
 Identities = 23/108 (21%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
 Frame = +3

Query: 12  RKMMRPLPSEVEMVSTHE--PGSAVDVXXXXXXXXXIMVGRN--ASGQVKVAFPAEEYTA 179
           R+ +RP P +  +       PG+AVDV         ++V  +  ++  +++ FP E + +
Sbjct: 452 RRRVRPRPQQNSLADGTNLLPGAAVDVWQFSGWWEGVLVSADNISADSLQIYFPGENFFS 511

Query: 180 WFEESKVRISREWFDGQWLAVQPNANTIDKNLGLHSNSQEKDRNSSPE 323
             +   +RIS++W    W+ ++   + + K   +   +++ D  +S E
Sbjct: 512 VCQLKNLRISKDWVKSHWVDIEMKPDVLSKIPSVGVQTRQPDNLTSVE 559


>tr|Q0D4S5|Q0D4S5_ORYSJ Os07g0607300 protein OS=Oryza sativa subsp.
           japonica GN=Os07g0607300 PE=4 SV=1
          Length = 346

 Score = 42.0 bits (97), Expect = 0.035
 Identities = 23/108 (21%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
 Frame = +3

Query: 12  RKMMRPLPSEVEMVSTHE--PGSAVDVXXXXXXXXXIMVGRN--ASGQVKVAFPAEEYTA 179
           R+ +RP P +  +       PG+AVDV         ++V  +  ++  +++ FP E + +
Sbjct: 162 RRRVRPRPQQNSLADGTNLLPGAAVDVWQFSGWWEGVLVSADNISADSLQIYFPGENFFS 221

Query: 180 WFEESKVRISREWFDGQWLAVQPNANTIDKNLGLHSNSQEKDRNSSPE 323
             +   +RIS++W    W+ ++   + + K   +   +++ D  +S E
Sbjct: 222 VCQLKNLRISKDWVKSHWVDIEMKPDVLSKIPSVGVQTRQPDNLTSVE 269


>tr|Q6ZKB4|Q6ZKB4_ORYSJ Putative uncharacterized protein
           OJ1124_B05.16 (Putative uncharacterized protein
           OJ1111_B08.7) OS=Oryza sativa subsp. japonica
           GN=OJ1124_B05.16 PE=4 SV=1
          Length = 684

 Score = 40.8 bits (94), Expect = 0.079
 Identities = 24/77 (31%), Positives = 37/77 (48%)
 Frame = +3

Query: 3   ISGRKMMRPLPSEVEMVSTHEPGSAVDVXXXXXXXXXIMVGRNASGQVKVAFPAEEYTAW 182
           I  R M+RP     +   + + GS VD          I++ +    +++V FP E+  A 
Sbjct: 461 IPERPMVRPYHVHSKDPCSFDAGSIVDAWWNSGWWEGIVLQQGNDRRLQVYFPGEKQIAD 520

Query: 183 FEESKVRISREWFDGQW 233
           F E  +R SREW  G+W
Sbjct: 521 FCEDDLRHSREWAGGKW 537


>tr|Q0J5J1|Q0J5J1_ORYSJ Os08g0431100 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os08g0431100 PE=4 SV=1
          Length = 596

 Score = 40.8 bits (94), Expect = 0.079
 Identities = 24/77 (31%), Positives = 37/77 (48%)
 Frame = +3

Query: 3   ISGRKMMRPLPSEVEMVSTHEPGSAVDVXXXXXXXXXIMVGRNASGQVKVAFPAEEYTAW 182
           I  R M+RP     +   + + GS VD          I++ +    +++V FP E+  A 
Sbjct: 373 IPERPMVRPYHVHSKDPCSFDAGSIVDAWWNSGWWEGIVLQQGNDRRLQVYFPGEKQIAD 432

Query: 183 FEESKVRISREWFDGQW 233
           F E  +R SREW  G+W
Sbjct: 433 FCEDDLRHSREWAGGKW 449


>tr|A7P367|A7P367_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030322001
           PE=4 SV=1
          Length = 382

 Score = 40.8 bits (94), Expect = 0.079
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +3

Query: 3   ISGRKMMRPLP--SEVEMVS-THEPGSAVDVXXXXXXXXXIMVGRNASGQVKVAFPAEEY 173
           I GR  +RP P  S    VS   + GS VD          I+V + +  ++ V FP E+ 
Sbjct: 166 ICGRTTIRPPPPGSNKGRVSWAFDVGSVVDAWWHDGWWEGIVVQKESEDRIHVYFPGEKQ 225

Query: 174 TAWFEESKVRISREWFDGQW 233
              F  S +R S EW++  W
Sbjct: 226 ELVFGRSDLRHSEEWYENSW 245