DK950617 |
Clone id |
TST38A01NGRL0009_C15 |
Library |
TST38 |
Length |
428 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_C15. 5' end sequence. |
Accession |
DK950617 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL3Contig2 |
Sequence |
GAAGGGTATGTTTGTCGCTGGGTATACATACTCTTCTTGGCCTCTTCACTCTCTCCCTCT GCTGAGTATTTGCCAAGCTGAGCCAAAGAGTTGGCCTTCGCTCTGATGAGGGAGAGAGTG AAGAGGCCAAGAAGGGTATGTTTGTCGCTGGGTATACATACTAAGAAGATAGTTTGTACC CATTTTGGTTCTGTGATCTGTCCAATCGTGTGAATCACCACCACTCACTATATGCTCTCT GCAGTTGTATATGCTGCCTAGTCAGTAAATTGTGAAAGGGATATGAGGTACCAAGTTTTT AATGTTATGGTAAACCTCCATTTGTTGTATGCTGAGCAACTTGATTTGCCCATGTATCTT ACATTATTTTTATCCCCCCCCCCTGGCTCTTCTGGCCTTTTCAAAAAAAAAAAAAGGGGA AAACCCAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9ZU52 |
Definition |
sp|Q9ZU52|ALFC3_ARATH Probable fructose-bisphosphate aldolase 3, chloroplastic OS=Arabidopsis thaliana |
Align length |
25 |
Score (bit) |
38.9 |
E-value |
0.008 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950617|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0009_C15, 5' (402 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9ZU52|ALFC3_ARATH Probable fructose-bisphosphate aldolase 3,... 39 0.008 sp|Q944G9|ALFC2_ARATH Probable fructose-bisphosphate aldolase 2,... 39 0.008 sp|Q9SJU4|ALFC1_ARATH Probable fructose-bisphosphate aldolase 1,... 39 0.008 sp|Q01516|ALFC1_PEA Fructose-bisphosphate aldolase 1, chloroplas... 32 0.75 sp|Q9CCP1|UVRC_MYCLE UvrABC system protein C OS=Mycobacterium le... 30 2.8 sp|Q3IK52|RNPA_PSEHT Ribonuclease P protein component OS=Pseudoa... 30 2.8 sp|Q40677|ALFC_ORYSJ Fructose-bisphosphate aldolase, chloroplast... 30 2.8 sp|Q1B9D1|UVRC_MYCSS UvrABC system protein C OS=Mycobacterium sp... 30 3.7 sp|A1UFN2|UVRC_MYCSK UvrABC system protein C OS=Mycobacterium sp... 30 3.7 sp|A3PZ93|UVRC_MYCSJ UvrABC system protein C OS=Mycobacterium sp... 30 3.7 sp|Q89AY6|PMBA_BUCBP Protein pmbA homolog OS=Buchnera aphidicola... 30 3.7 sp|Q66G57|BTUB_YERPS Vitamin B12 transporter btuB OS=Yersinia ps... 30 4.8 sp|A7FD14|BTUB_YERP3 Vitamin B12 transporter btuB OS=Yersinia ps... 30 4.8 sp|A1T8K4|UVRC_MYCVP UvrABC system protein C OS=Mycobacterium va... 29 8.2 sp|A4TC09|UVRC_MYCGI UvrABC system protein C OS=Mycobacterium gi... 29 8.2 sp|Q6AXR8|ORAI3_RAT Protein orai-3 OS=Rattus norvegicus GN=Orai3... 29 8.3
>sp|Q9ZU52|ALFC3_ARATH Probable fructose-bisphosphate aldolase 3, chloroplastic OS=Arabidopsis thaliana GN=FBA3 PE=1 SV=1 Length = 391
Score = 38.9 bits (89), Expect = 0.008 Identities = 17/25 (68%), Positives = 21/25 (84%) Frame = +3
Query: 87 RVGLRSDEGESEEAKKGMFVAGYTY 161 ++G S EGE+E+AKKGMFV GYTY Sbjct: 367 QLGKYSAEGENEDAKKGMFVKGYTY 391
>sp|Q944G9|ALFC2_ARATH Probable fructose-bisphosphate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=FBA2 PE=1 SV=1 Length = 398
Score = 38.9 bits (89), Expect = 0.008 Identities = 17/25 (68%), Positives = 21/25 (84%) Frame = +3
Query: 87 RVGLRSDEGESEEAKKGMFVAGYTY 161 ++G + EGESEEAK+GMFV GYTY Sbjct: 374 QLGKYTGEGESEEAKEGMFVKGYTY 398
>sp|Q9SJU4|ALFC1_ARATH Probable fructose-bisphosphate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=FBA1 PE=1 SV=2 Length = 399
Score = 38.9 bits (89), Expect = 0.008 Identities = 17/25 (68%), Positives = 21/25 (84%) Frame = +3
Query: 87 RVGLRSDEGESEEAKKGMFVAGYTY 161 ++G + EGESEEAK+GMFV GYTY Sbjct: 375 QLGKYTGEGESEEAKEGMFVKGYTY 399
>sp|Q01516|ALFC1_PEA Fructose-bisphosphate aldolase 1, chloroplastic (Fragment) OS=Pisum sativum PE=1 SV=1 Length = 356
Score = 32.3 bits (72), Expect = 0.75 Identities = 14/25 (56%), Positives = 19/25 (76%) Frame = +3
Query: 87 RVGLRSDEGESEEAKKGMFVAGYTY 161 ++G +GESEEAKK +FV GY+Y Sbjct: 332 QLGKYYGDGESEEAKKELFVKGYSY 356
>sp|Q9CCP1|UVRC_MYCLE UvrABC system protein C OS=Mycobacterium leprae GN=uvrC PE=3 SV=1 Length = 647
Score = 30.4 bits (67), Expect = 2.8 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 7/40 (17%) Frame = +1
Query: 97 FALMRERVKRPRRVCLS-------LGIHTKKIVCTHFGSV 195 FA+ R KR +R+ S LG H +K + THFGS+ Sbjct: 570 FAITYHRSKRSKRMTASALDSVPGLGAHRRKALVTHFGSI 609
>sp|Q3IK52|RNPA_PSEHT Ribonuclease P protein component OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rnpA PE=3 SV=1 Length = 140
Score = 30.4 bits (67), Expect = 2.8 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Frame = -3
Query: 136 PFLASSLSPSSERRPTLWLSLANTQ-----QRERVKRPRRVCIPSDKHTL 2 PF P+ + +P L L++A + QR R+KR R C +KH + Sbjct: 31 PFFTLLAKPNDQDQPRLGLTVAKKRVKKACQRNRIKRLARECFRLNKHNI 80
>sp|Q40677|ALFC_ORYSJ Fructose-bisphosphate aldolase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os11g0171300 PE=1 SV=2 Length = 388
Score = 30.4 bits (67), Expect = 2.8 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = +3
Query: 87 RVGLRSDEGESEEAKKGMFVAGYTY 161 ++G + +GE+ EAK+GMFV Y Y Sbjct: 364 QLGKYTSDGEAAEAKEGMFVKNYVY 388
>sp|Q1B9D1|UVRC_MYCSS UvrABC system protein C OS=Mycobacterium sp. (strain MCS) GN=uvrC PE=3 SV=1 Length = 676
Score = 30.0 bits (66), Expect = 3.7 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 7/40 (17%) Frame = +1
Query: 97 FALMRERVKRPRRVCLS-------LGIHTKKIVCTHFGSV 195 FA+ R KR +R+ S LG H +K + THFGSV Sbjct: 582 FAITYHRSKRSKRMTASALDSVRGLGEHRRKALVTHFGSV 621
>sp|A1UFN2|UVRC_MYCSK UvrABC system protein C OS=Mycobacterium sp. (strain KMS) GN=uvrC PE=3 SV=1 Length = 676
Score = 30.0 bits (66), Expect = 3.7 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 7/40 (17%) Frame = +1
Query: 97 FALMRERVKRPRRVCLS-------LGIHTKKIVCTHFGSV 195 FA+ R KR +R+ S LG H +K + THFGSV Sbjct: 582 FAITYHRSKRSKRMTASALDSVRGLGEHRRKALVTHFGSV 621
>sp|A3PZ93|UVRC_MYCSJ UvrABC system protein C OS=Mycobacterium sp. (strain JLS) GN=uvrC PE=3 SV=1 Length = 676
Score = 30.0 bits (66), Expect = 3.7 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 7/40 (17%) Frame = +1
Query: 97 FALMRERVKRPRRVCLS-------LGIHTKKIVCTHFGSV 195 FA+ R KR +R+ S LG H +K + THFGSV Sbjct: 582 FAITYHRSKRSKRMTASALDSVRGLGEHRRKALVTHFGSV 621
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q8GV31 |
Definition |
tr|Q8GV31|Q8GV31_SOLBR Plastidic aldolase (Fragment) OS=Solanum brevidens |
Align length |
25 |
Score (bit) |
41.2 |
E-value |
0.026 |
Report |
|