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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950623
Clone id TST38A01NGRL0009_C21
Library
Length 679
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_C21. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
CTCAATGGGAAGTGATTTGGACTTTAGAAGTAAGAGCATGCTTTGTGTTTGTGTCTTGAC
TTGGAGAAAGTTCGTGAGAAAATTCTTTTAGACATCCTCAAACTCTTTCCAAGTAGACTT
GGAGATGCTACCACCCCATACTTCCAACTCCATAAAGAATCACTGGTGTCACCAAGGTGT
CAAAGAGGTATTTTTTGAGAGCCCAACATCTAATCTCTCTCGCATTGTACATGTTCTCAA
ATGCATAGTAGGTTCCCTTCTCGGCTTGCATAGCACAATATGAATCGCCGAAACCTCAAG
GCCAAGGTACTTGAAGCTCTGCACCGCGTCAAGGGGCTCTTTATTGTACACAATGCATGG
CTTCTTCTTTGTGAGACTCCCACAAGCATAACCTTTGTTACGGAGCCAAAAACAAGTAGC
TCACTATGTAAGCAAAAGTTTTCCAAGTATATCATAGGCTTTTGTGCATCTTCTAAAGTA
TGGGCCAAAAGCACTACATCATTGACATACAATGATAGCATGATCACCAAGGTGGAAAGG
TACGGAGTGTACGGTACGTAATCAGTACGTAAGGTACGTACTTCTGTACGGATCGGCCTT
TACGGTACATGACTAGTACGTAACATTTGTAACAACAAAAAGAATAGTGACTTTAGCCTT
TTTCAGCCTATACATACTA
■■Homology search results ■■ -
sp_hit_id Q86IV0
Definition sp|Q86IV0|Y7931_DICDI Putative uncharacterized protein DDB_G0274369 OS=Dictyostelium discoideum
Align length 74
Score (bit) 34.7
E-value 0.48
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950623|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_C21, 5'
         (679 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q86IV0|Y7931_DICDI Putative uncharacterized protein DDB_G0274...    35   0.48 
sp|P44308|NADR_HAEIN Transcriptional regulator nadR OS=Haemophil...    31   5.3  
sp|P83501|MSTAB_DROME Protein msta, isoform B OS=Drosophila mela...    30   9.1  

>sp|Q86IV0|Y7931_DICDI Putative uncharacterized protein DDB_G0274369
           OS=Dictyostelium discoideum GN=DDB_G0274369 PE=4 SV=1
          Length = 352

 Score = 34.7 bits (78), Expect = 0.48
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +1

Query: 277 NMNRRNLKAKVLEALHRVKGLFIVHNAWLLLCETPTSITFVTEPKTSSSLCKQKFS-KYI 453
           N N  N  +K ++  +++K  F  H   +LL + PT I  +   + S+++   +F  KY+
Sbjct: 64  NSNNFNNNSKEIKNENKIKNFF-QHLFSILLLKNPTMIQIIETLELSTNIYNIQFKLKYL 122

Query: 454 IGFCASSKVWAKST 495
           +  C SS++  KS+
Sbjct: 123 LAICVSSQIIFKSS 136


>sp|P44308|NADR_HAEIN Transcriptional regulator nadR OS=Haemophilus
           influenzae GN=nadR PE=1 SV=1
          Length = 421

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 363 KPCIVYNKEPLDAVQSFKYLGLEVSAI 283
           +P IV++ EP D     KYLGLEVS +
Sbjct: 166 EPSIVFSSEPQDKAPYEKYLGLEVSLV 192


>sp|P83501|MSTAB_DROME Protein msta, isoform B OS=Drosophila
           melanogaster GN=msta PE=2 SV=2
          Length = 448

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 303 GLEVSAIHIVLCKPRREPTMHLRTCTMRERLDVGLSKNTSLTP 175
           G E+   H +L  P    +M+LRTCT+  RL  G + + +L P
Sbjct: 65  GEELFREHTLLVGPTAHRSMNLRTCTLCYRLIPGSTDSAALCP 107
tr_hit_id B1LC78
Definition tr|B1LC78|B1LC78_THESQ Cystathionine gamma-lyase OS=Thermotoga sp. (strain RQ2)
Align length 77
Score (bit) 34.7
E-value 5.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950623|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_C21, 5'
         (679 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1LC78|B1LC78_THESQ Cystathionine gamma-lyase OS=Thermotoga s...    35   5.8  
tr|A8GIQ8|A8GIQ8_SERP5 Putative uncharacterized protein OS=Serra...    35   5.8  
tr|Q9X0Z7|Q9X0Z7_THEMA Cystathionine gamma-synthase OS=Thermotog...    34   7.5  
tr|Q0F226|Q0F226_9PROT Putative uncharacterized protein OS=Marip...    34   9.7  
tr|A6PPY6|A6PPY6_9BACT Hydrogenase, Fe-only OS=Victivallis vaden...    34   9.7  

>tr|B1LC78|B1LC78_THESQ Cystathionine gamma-lyase OS=Thermotoga sp.
           (strain RQ2) GN=TRQ2_1550 PE=3 SV=1
          Length = 379

 Score = 34.7 bits (78), Expect = 5.8
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +2

Query: 11  SDLDFRSKSMLCVCVLTWRKFVRKFF*TSSNSFQVDLEMLPPHTSNSIKNHWCHQGVKEV 190
           S L F S     VCV     + +KFF   S  F +++  +PP     ++     +  K +
Sbjct: 88  SILHFLSSGDHVVCVDEAYSWAKKFFNYLSRKFNIEISYVPPDAEKIVEA--ITKKTKLI 145

Query: 191 FFESPTSNLSRIVHVLK 241
           + ESPTS   +++ + K
Sbjct: 146 YLESPTSMRMKVIDIRK 162


>tr|A8GIQ8|A8GIQ8_SERP5 Putative uncharacterized protein OS=Serratia
           proteamaculans (strain 568) GN=Spro_3903 PE=4 SV=1
          Length = 217

 Score = 34.7 bits (78), Expect = 5.8
 Identities = 25/81 (30%), Positives = 35/81 (43%)
 Frame = +2

Query: 122 EMLPPHTSNSIKNHWCHQGVKEVFFESPTSNLSRIVHVLKCIVGSLLGLHSTI*IAETSR 301
           E L   TS + +  +  Q    V       N  R V  ++ + G   G H TI   E ++
Sbjct: 63  ESLASFTSAAYRAAFTEQTPWSVASLDKMRNPMRRVCAVEAVTGQGCGSHLTIVTLEPAQ 122

Query: 302 PRYLKLCTASRGSLLYTMHGF 364
           P+ LK C    GSLL  + GF
Sbjct: 123 PQVLKACIKHLGSLLAELPGF 143


>tr|Q9X0Z7|Q9X0Z7_THEMA Cystathionine gamma-synthase OS=Thermotoga
           maritima GN=TM_1270 PE=3 SV=1
          Length = 379

 Score = 34.3 bits (77), Expect = 7.5
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +2

Query: 11  SDLDFRSKSMLCVCVLTWRKFVRKFF*TSSNSFQVDLEMLPPHTSNSIKNHWCHQGVKEV 190
           S L F S     VCV     + +KFF   S  F +++  +PP     ++     +  K +
Sbjct: 88  SILHFLSSGDHVVCVDEAYSWAKKFFNYLSKKFDIEVSYVPPDAERIVEA--ITKKTKLI 145

Query: 191 FFESPTSNLSRIVHVLK 241
           + ESPTS   +++ + K
Sbjct: 146 YLESPTSMRMKVIDIRK 162


>tr|Q0F226|Q0F226_9PROT Putative uncharacterized protein
           OS=Mariprofundus ferrooxydans PV-1 GN=SPV1_02212 PE=4
           SV=1
          Length = 352

 Score = 33.9 bits (76), Expect = 9.7
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
 Frame = -3

Query: 596 PIRTEVRTLRTDYVPYTPYLSTLVIMLSLYVN------DVVLLAHTLEDAQKPMIYLENF 435
           P+RT V  L +DY   +PY   LVI     ++      D+ +LA TL + +K +   + +
Sbjct: 13  PLRTHVHKLLSDYQHDSPYKRALVIETMRLISSDIGNADIKMLARTLTELRKGLNVFKPY 72

Query: 434 CLHSELLVFGS 402
               ++ +FGS
Sbjct: 73  QSWRKVSIFGS 83


>tr|A6PPY6|A6PPY6_9BACT Hydrogenase, Fe-only OS=Victivallis vadensis
           ATCC BAA-548 GN=VvadDRAFT_0274 PE=4 SV=1
          Length = 676

 Score = 33.9 bits (76), Expect = 9.7
 Identities = 23/66 (34%), Positives = 34/66 (51%)
 Frame = -3

Query: 476 LEDAQKPMIYLENFCLHSELLVFGSVTKVMLVGVSQRRSHALCTIKSPLTRCRASSTLAL 297
           LE  +K  I +  FC HSEL ++G+  ++ LV +  R   A C+IK        + T A+
Sbjct: 24  LEVIRKAGIDIPTFCYHSELSIYGA-CRLCLVDIKGRGIMASCSIKPEPGMVVQTDTKAI 82

Query: 296 RFRRFI 279
           R  R I
Sbjct: 83  RNMRKI 88