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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950629
Clone id TST38A01NGRL0009_D04
Library
Length 665
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_D04. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
GGAGATTCAGGCTTTGCTGCAAGTACTGAATGCCACTAGAAGATATAGCAGAGGTCTTTG
ATGGCCTTATTCATATATGGCAAGGTGATAGTGATAATCTTGTACCCTTTCAGATGCAAC
GAATTGTTAAAAGTCAGCTTCCCAAGATTGTGAATTTGCATGAGCTCAAAGGAGAAGGAC
ACCTGTCATGGTTTTGCTTCAACCATGCGGCCCATAGGGAGACGCTTGCAACCTTGTTCG
GTGAAGTTGAGAGTTAAACTAGTGTTTGAAGTTGTAAAGGAGATTCAGGCTTTGCTGCAA
GTACTGAATGCCACTGGAAGATACCCACCCTGGTGAAGAGCCCAAAAACTTATCTTGAAG
TAAATGGCCTTCACATGATAGTTAATGCCAGCAATACGATCGGCCTTACTTTGGAGTAGT
TGTTCCCTGTTGAATGTTCATGCCAGCAAGACAATGCTCTGTAGATTGTTTATTGTGGTG
GTATAAACTTCATCGATGAGTTTTTATGGCTATTGAGCTCAGTTTGAGACTTTTTTGTAC
TTACGTGAATGTTTTGCCATGTGGGCAAGCATATGGCAGTGTGGTAGATCTGCGCACTTG
AACTGTCAATCTTAATACAAGAAGGTTTGGAAATTTTCTCATGCAAAAAAAAAAAAAAAA
AAAAA
■■Homology search results ■■ -
sp_hit_id P43692
Definition sp|P43692|GATA5_CHICK Transcription factor GATA-5 OS=Gallus gallus
Align length 63
Score (bit) 30.4
E-value 8.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950629|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_D04, 5'
         (644 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P43692|GATA5_CHICK Transcription factor GATA-5 OS=Gallus gall...    30   8.2  

>sp|P43692|GATA5_CHICK Transcription factor GATA-5 OS=Gallus gallus
           GN=GATA5 PE=2 SV=1
          Length = 391

 Score = 30.4 bits (67), Expect = 8.2
 Identities = 21/63 (33%), Positives = 26/63 (41%)
 Frame = -3

Query: 498 HR*SLYHHNKQSTEHCLAGMNIQQGTTTPK*GRSYCWH*LSCEGHLLQDKFLGSSPGWVS 319
           H  S Y H+  +  H  AG  +   TT          +  SCE H      LG+ PGW  
Sbjct: 11  HGQSAYSHDSGNFLHSSAGSPVYVPTTRVPSVLQTLPYLQSCEPH---QSHLGNPPGWAQ 67

Query: 318 SSG 310
           SSG
Sbjct: 68  SSG 70
tr_hit_id A9SYY0
Definition tr|A9SYY0|A9SYY0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 65
Score (bit) 70.5
E-value 8.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950629|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_D04, 5'
         (644 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SYY0|A9SYY0_PHYPA Predicted protein (Fragment) OS=Physcomit...    70   8e-11
tr|A9TMK5|A9TMK5_PHYPA Predicted protein (Fragment) OS=Physcomit...    65   3e-09
tr|A9RWR3|A9RWR3_PHYPA Predicted protein OS=Physcomitrella paten...    64   8e-09
tr|Q10N00|Q10N00_ORYSJ Os03g0288300 protein OS=Oryza sativa subs...    58   6e-07
tr|B8ALK4|B8ALK4_ORYSI Putative uncharacterized protein OS=Oryza...    58   6e-07
tr|A3AGU6|A3AGU6_ORYSJ Putative uncharacterized protein OS=Oryza...    58   6e-07
tr|B4F8S1|B4F8S1_MAIZE Putative uncharacterized protein OS=Zea m...    55   5e-06
tr|Q9LYY8|Q9LYY8_ARATH Putative uncharacterized protein F9G14_28...    52   3e-05
tr|A7PSZ2|A7PSZ2_VITVI Chromosome chr8 scaffold_29, whole genome...    52   3e-05
tr|Q9SJM9|Q9SJM9_ARATH Expressed protein OS=Arabidopsis thaliana...    51   5e-05
tr|Q84VY8|Q84VY8_ARATH At2g36290 (Putative uncharacterized prote...    51   5e-05
tr|Q9M382|Q9M382_ARATH Putative uncharacterized protein F24B22.2...    50   1e-04
tr|Q6L459|Q6L459_SOLDE Hydrolase, alpha/beta fold family protein...    50   1e-04
tr|Q4PSL3|Q4PSL3_ARATH Hydrolase OS=Arabidopsis thaliana GN=At3g...    50   1e-04
tr|A7QFC6|A7QFC6_VITVI Chromosome undetermined scaffold_87, whol...    50   2e-04
tr|A7NZE5|A7NZE5_VITVI Chromosome chr6 scaffold_3, whole genome ...    50   2e-04
tr|A5AYH5|A5AYH5_VITVI Putative uncharacterized protein OS=Vitis...    50   2e-04
tr|Q9STM1|Q9STM1_ARATH Putative uncharacterized protein T29H11_7...    48   4e-04
tr|A7PPF0|A7PPF0_VITVI Chromosome chr8 scaffold_23, whole genome...    47   8e-04
tr|A5BIU5|A5BIU5_VITVI Putative uncharacterized protein (Fragmen...    47   8e-04
tr|Q9C914|Q9C914_ARATH Putative uncharacterized protein F1O17.4 ...    47   0.001
tr|A7QLK2|A7QLK2_VITVI Chromosome undetermined scaffold_119, who...    47   0.001
tr|A5ARM5|A5ARM5_VITVI Putative uncharacterized protein OS=Vitis...    47   0.001
tr|Q9C915|Q9C915_ARATH Putative uncharacterized protein F1O17.3 ...    46   0.002
tr|Q8LBQ8|Q8LBQ8_ARATH Putative uncharacterized protein OS=Arabi...    46   0.002
tr|Q9SJF9|Q9SJF9_ARATH T27G7.1 (Fragment) OS=Arabidopsis thalian...    45   0.004
tr|Q9SGC8|Q9SGC8_ARATH T23G18.18 OS=Arabidopsis thaliana PE=4 SV=1     45   0.004
tr|Q9C913|Q9C913_ARATH Putative uncharacterized protein F1O17.5 ...    45   0.004
tr|Q8LFG4|Q8LFG4_ARATH Putative uncharacterized protein OS=Arabi...    45   0.004
tr|Q10SN6|Q10SN6_ORYSJ cDNA, clone: J100028A19, full insert sequ...    45   0.004

>tr|A9SYY0|A9SYY0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_137721 PE=4 SV=1
          Length = 428

 Score = 70.5 bits (171), Expect = 8e-11
 Identities = 34/65 (52%), Positives = 41/65 (63%)
 Frame = +3

Query: 57  FDGLIHIWQGDSDNLVPFQMQRIVKSQLPKIVNLHELKGEGHLSWFCFNHAAHRETLATL 236
           F G IHI+ G  D LVP  M +  K  LP+ V+LH L+G GH SWFC+  + HRE    L
Sbjct: 266 FTGPIHIYHGAEDALVPLTMSQHAKRMLPQ-VHLHVLEGHGHFSWFCYCDSCHRELFKAL 324

Query: 237 FGEVE 251
           FGEVE
Sbjct: 325 FGEVE 329


>tr|A9TMK5|A9TMK5_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_2950 PE=4 SV=1
          Length = 327

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 34/64 (53%), Positives = 39/64 (60%)
 Frame = +3

Query: 57  FDGLIHIWQGDSDNLVPFQMQRIVKSQLPKIVNLHELKGEGHLSWFCFNHAAHRETLATL 236
           F G IHI+ G  D +VP  M    K  LP+ V LH+L+GEGH SWF      HRE L TL
Sbjct: 263 FSGPIHIFHGTEDKVVPLVMSEYAKRILPQ-VELHKLQGEGHYSWFFNCDHCHRELLKTL 321

Query: 237 FGEV 248
           FGEV
Sbjct: 322 FGEV 325


>tr|A9RWR3|A9RWR3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_206327 PE=4 SV=1
          Length = 583

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 33/64 (51%), Positives = 39/64 (60%)
 Frame = +3

Query: 57  FDGLIHIWQGDSDNLVPFQMQRIVKSQLPKIVNLHELKGEGHLSWFCFNHAAHRETLATL 236
           F G IHI+ G  D +VP  M   VK  LP+ V LH+L+GEGH SW+      HRE   TL
Sbjct: 432 FFGPIHIFHGTEDKIVPLVMSEYVKRVLPQ-VELHKLEGEGHYSWYFNCDHCHRELFKTL 490

Query: 237 FGEV 248
           FGEV
Sbjct: 491 FGEV 494


>tr|Q10N00|Q10N00_ORYSJ Os03g0288300 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0288300 PE=2 SV=1
          Length = 536

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 28/62 (45%), Positives = 37/62 (59%)
 Frame = +3

Query: 57  FDGLIHIWQGDSDNLVPFQMQRIVKSQLPKIVNLHELKGEGHLSWFCFNHAAHRETLATL 236
           F G IHIWQG  D +VP  +   V+  +P    +H+L  EGH S+FCF    HR+  +TL
Sbjct: 436 FLGPIHIWQGMDDRVVPPSVTEYVRRVVPG-ATVHKLLDEGHFSYFCFCDECHRQIFSTL 494

Query: 237 FG 242
           FG
Sbjct: 495 FG 496


>tr|B8ALK4|B8ALK4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_11090 PE=4 SV=1
          Length = 476

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 28/62 (45%), Positives = 37/62 (59%)
 Frame = +3

Query: 57  FDGLIHIWQGDSDNLVPFQMQRIVKSQLPKIVNLHELKGEGHLSWFCFNHAAHRETLATL 236
           F G IHIWQG  D +VP  +   V+  +P    +H+L  EGH S+FCF    HR+  +TL
Sbjct: 376 FLGPIHIWQGMDDRVVPPSVTEYVRRVVPG-ATVHKLLDEGHFSYFCFCDECHRQIFSTL 434

Query: 237 FG 242
           FG
Sbjct: 435 FG 436


>tr|A3AGU6|A3AGU6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_010018 PE=4 SV=1
          Length = 470

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 28/62 (45%), Positives = 37/62 (59%)
 Frame = +3

Query: 57  FDGLIHIWQGDSDNLVPFQMQRIVKSQLPKIVNLHELKGEGHLSWFCFNHAAHRETLATL 236
           F G IHIWQG  D +VP  +   V+  +P    +H+L  EGH S+FCF    HR+  +TL
Sbjct: 370 FLGPIHIWQGMDDRVVPPSVTEYVRRVVPG-ATVHKLLDEGHFSYFCFCDECHRQIFSTL 428

Query: 237 FG 242
           FG
Sbjct: 429 FG 430


>tr|B4F8S1|B4F8S1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 533

 Score = 54.7 bits (130), Expect = 5e-06
 Identities = 27/62 (43%), Positives = 36/62 (58%)
 Frame = +3

Query: 57  FDGLIHIWQGDSDNLVPFQMQRIVKSQLPKIVNLHELKGEGHLSWFCFNHAAHRETLATL 236
           F G IHIWQG  D +V   +   V+  +P    +H+L  EGH S+FCF    HR+  +TL
Sbjct: 432 FLGPIHIWQGMDDRVVSPAVAEFVRRVVPG-ATVHKLLDEGHFSYFCFCDECHRQIFSTL 490

Query: 237 FG 242
           FG
Sbjct: 491 FG 492


>tr|Q9LYY8|Q9LYY8_ARATH Putative uncharacterized protein F9G14_280
           (At5g02970/F9G14_280) OS=Arabidopsis thaliana
           GN=F9G14_280 PE=2 SV=1
          Length = 514

 Score = 52.0 bits (123), Expect = 3e-05
 Identities = 23/59 (38%), Positives = 33/59 (55%)
 Frame = +3

Query: 69  IHIWQGDSDNLVPFQMQRIVKSQLPKIVNLHELKGEGHLSWFCFNHAAHRETLATLFGE 245
           IHIWQG  D + P  M   +   +P+   +H+++ EGH S+F F    HR+    LFGE
Sbjct: 433 IHIWQGMEDRVAPPSMSDYISRMIPE-ATVHKIRNEGHFSFFYFCDECHRQIFYALFGE 490


>tr|A7PSZ2|A7PSZ2_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023144001
           PE=4 SV=1
          Length = 480

 Score = 52.0 bits (123), Expect = 3e-05
 Identities = 27/58 (46%), Positives = 34/58 (58%)
 Frame = +3

Query: 69  IHIWQGDSDNLVPFQMQRIVKSQLPKIVNLHELKGEGHLSWFCFNHAAHRETLATLFG 242
           IHIWQG  D +VP  M   V S++     +H+L  EGH S+F F    HR+ L TLFG
Sbjct: 404 IHIWQGMDDEVVPPPMTDYV-SRILAGATVHKLPNEGHFSYFVFCDECHRQILTTLFG 460


>tr|Q9SJM9|Q9SJM9_ARATH Expressed protein OS=Arabidopsis thaliana
           GN=At2g36290 PE=2 SV=1
          Length = 364

 Score = 51.2 bits (121), Expect = 5e-05
 Identities = 24/52 (46%), Positives = 34/52 (65%)
 Frame = +3

Query: 30  MPLEDIAEVFDGLIHIWQGDSDNLVPFQMQRIVKSQLPKIVNLHELKGEGHL 185
           M LE++    +G +H+WQGD D LVP  +QR +  +LP I + HE+ G GHL
Sbjct: 291 MELENLFPNNEGSVHLWQGDDDVLVPVTLQRYIAKKLPWI-HYHEIPGAGHL 341