BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950634|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_D09, 5'
         (633 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46400|RPOD_RHOCA RNA polymerase sigma factor rpoD OS=Rhodoba...    30   7.9  

>sp|P46400|RPOD_RHOCA RNA polymerase sigma factor rpoD
           OS=Rhodobacter capsulatus GN=rpoD PE=2 SV=1
          Length = 674

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +2

Query: 371 KHDAGCPSDALIDVEEDVDDGCRGGIRICISLCRPALLKPREVCSIDTPEKAPLCDIDRC 550
           ++DA     + ID EED DD     +    +  +P +L+  E+ + D  + A + D+   
Sbjct: 230 EYDADGNPISRIDEEEDDDDSSNMSLAAMEAALKPKVLETLELIARDYAKLAEMQDLRMS 289

Query: 551 GT---DGKSSGADEASH 592
            T   DG  S A+EA++
Sbjct: 290 ATLNEDGTFSVAEEAAY 306

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950634|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_D09, 5'
         (633 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5TT59|Q5TT59_ANOGA AGAP003576-PA OS=Anopheles gambiae GN=AGA...    37   0.76 
tr|B6NRD7|B6NRD7_BRAFL Putative uncharacterized protein OS=Branc...    37   0.99 
tr|A0DTS8|A0DTS8_PARTE Chromosome undetermined scaffold_63, whol...    35   2.9  
tr|Q2I6M7|Q2I6M7_9DELT Epidermal growth factor domain-containing...    34   6.4  

>tr|Q5TT59|Q5TT59_ANOGA AGAP003576-PA OS=Anopheles gambiae
           GN=AGAP003576 PE=4 SV=1
          Length = 922

 Score = 37.4 bits (85), Expect = 0.76
 Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
 Frame = +2

Query: 317 SADSTLSITQTCIPRRH-VKHDAGCPSDAL----IDVEEDVDDGCRGGIRICISLCRPAL 481
           +A+S   I  TC  ++H V H +G    A      D++ +   G   GI I I    PA 
Sbjct: 521 AANSLQLICSTC--KKHMVGHISGLMEIARCLDSFDIQSESAIGLLKGISIIIGRLPPAQ 578

Query: 482 LKP--REVCSIDTPEKAPLCDIDRCGTDGKSSGADEASHPWLS*AALYFAH 628
           L P  +E+CS      + L + D  G DGK S +D A   WL   A  + H
Sbjct: 579 LTPAMQELCSFQVEALSRLANGDDDGLDGKKSRSDPAF--WLDRLASIYRH 627


>tr|B6NRD7|B6NRD7_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_98194 PE=4 SV=1
          Length = 2375

 Score = 37.0 bits (84), Expect = 0.99
 Identities = 35/119 (29%), Positives = 46/119 (38%), Gaps = 13/119 (10%)
 Frame = +2

Query: 278  CQQYPDCYGGKVVSAD----------STLSIT--QTCIPRRHVKHDAGC-PSDALIDVEE 418
            C   PDC  G+    +          +T+S+T   TC P   V     C P+D L D + 
Sbjct: 1815 CDGTPDCPRGEDEGKNCENMTTAIPMTTVSVTLPTTCAPEEFVCETGDCLPADKLCDGQP 1874

Query: 419  DVDDGCRGGIRICISLCRPALLKPREVCSIDTPEKAPLCDIDRCGTDGKSSGADEASHP 595
            D  DG       CI  C PA  +  +   ID    + LCD    G+     G DE   P
Sbjct: 1875 DCPDGSDEKDEYCIVTCAPAQFQCPDGTCIDI---SWLCD----GSVDCEDGTDELDCP 1926


>tr|A0DTS8|A0DTS8_PARTE Chromosome undetermined scaffold_63, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00020127001 PE=4 SV=1
          Length = 1228

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
 Frame = +2

Query: 236 CDRGSQISSTG--PC*CQQYPDCYGGKVVSADSTLSITQTCIPRRHVKHDAGCPSDALID 409
           CD G+  S+ G   C   QY +C GG   S D       TC+          CP + ++ 
Sbjct: 58  CDDGNLSSNDGCTSCKVDQYYECSGGSPTSPD-------TCVKT--------CP-NGIVS 101

Query: 410 VEEDVDDGCRGGIRICISLCRPALLKPREVCSIDTPEKAPLCDIDRCGTDGKSSGADE 583
             E+ DDG       C  LC   ++    VC  D   +  +C +D CG +GKS   +E
Sbjct: 102 GSEECDDGNNASGDGCY-LC---IIAMGFVC--DNSVQPSVCGVDVCG-NGKSHSLNE 152


>tr|Q2I6M7|Q2I6M7_9DELT Epidermal growth factor domain-containing
           protein OS=uncultured delta proteobacterium DeepAnt-1F12
           PE=4 SV=1
          Length = 1063

 Score = 34.3 bits (77), Expect = 6.4
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 488 PREVCSIDTPEKAPLC-DIDRCGTDGKSSG 574
           P+ V  +DTPE +P+C DID C TD    G
Sbjct: 119 PQFVTCVDTPEDSPVCTDIDECATDNGGCG 148