DK950635 |
Clone id |
TST38A01NGRL0009_D10 |
Library |
TST38 |
Length |
657 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_D10. 5' end sequence. |
Accession |
DK950635 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL64Contig1 |
Sequence |
TTTTTGGATGCTAGCTCGCATGGTTCTCCAGATGAGGGGAACTATTTCTCCACGCCAGCC GTGGGATGTCATGGTGGATCTGTTCTTCTATCGTGAGCCAGAGGAAGCCAAGGAGCGTGA GGAGGAGGAAGGTGCTGCACCAGAATTTGCACCTACAGAGTATAATGCGCCTCCTACAAT TGCTGCCGTCGCAGCAGCTCCTGACCAATGGGGTGAGGGAGGTGATGCTGGAAACTGGGA GCCAGCAGTGCCAGCCGCAGCAGCTGCTGCGGTGCAGGCCCCTGCCCAAGAGTGGACTGG AGCTGCTGCTCCTGCCCAAGGATGGGATGCTGCTCCTGCTCCTGCACCTGCCCCTGCCCC GGCTCCGACTGGCACCTATTCTGCAGGCATGGCTCCTTCTGGAGCTGGATGGGATTCTGC TCCTGCTGACTGGAATCCCACTCCTCAGTAATCTTCATTATTATCAATTTTGTAGTCTTG AGTTGACTGGCCTTGGATAAAAGCAAGAGCTGTGCTTTCGGAGATATTTGAACTCTAGAT TGTCCTTTAGTCACGAGGTGCAACTTTCTTAAAAGTTGCTGGTTCAAGTTTTGATTCTAG CTACCTTTGATTGTTGTCTCTGAAAATGAGTAATGCGATGTAATATTGACAATATAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9ZSR8 |
Definition |
sp|Q9ZSR8|RSSA_BRANA 40S ribosomal protein SA OS=Brassica napus |
Align length |
31 |
Score (bit) |
61.6 |
E-value |
3.0e-09 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S9Z5 |
Definition |
tr|A9S9Z5|A9S9Z5_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
159 |
Score (bit) |
70.5 |
E-value |
9.0e-11 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950635|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0009_D10, 5' (657 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S9Z5|A9S9Z5_PHYPA Predicted protein (Fragment) OS=Physcomit... 70 9e-11 tr|A9TDH1|A9TDH1_PHYPA Predicted protein OS=Physcomitrella paten... 62 2e-08 tr|A9S4V0|A9S4V0_PHYPA Predicted protein OS=Physcomitrella paten... 62 2e-08 tr|A9T6E0|A9T6E0_PHYPA Predicted protein (Fragment) OS=Physcomit... 62 4e-08 tr|A9P0C9|A9P0C9_PICSI Putative uncharacterized protein OS=Picea... 62 4e-08 tr|A9NV56|A9NV56_PICSI Putative uncharacterized protein OS=Picea... 62 4e-08 tr|Q01CH5|Q01CH5_OSTTA B1056G08.113 gene product (ISS) OS=Ostreo... 60 1e-07 tr|A9P891|A9P891_POPTR Putative uncharacterized protein OS=Popul... 59 2e-07 tr|Q94HF0|Q94HF0_ORYSA Putative 40S Ribosomal protein OS=Oryza s... 59 3e-07 tr|Q8H3I3|Q8H3I3_ORYSJ Os07g0616600 protein OS=Oryza sativa subs... 59 3e-07 tr|Q2V4D3|Q2V4D3_ARATH Uncharacterized protein At1g72370.2 OS=Ar... 59 3e-07 tr|Q10QU9|Q10QU9_ORYSJ cDNA clone:001-007-D06, full insert seque... 59 3e-07 tr|Q10QU8|Q10QU8_ORYSJ 40S ribosomal protein SA, putative, expre... 59 3e-07 tr|Q0DUK0|Q0DUK0_ORYSJ Os03g0182600 protein (Fragment) OS=Oryza ... 59 3e-07 tr|A2YNQ0|A2YNQ0_ORYSI Putative uncharacterized protein OS=Oryza... 59 3e-07 tr|A2XHR6|A2XHR6_ORYSI Putative uncharacterized protein OS=Oryza... 59 3e-07 tr|A2XD89|A2XD89_ORYSI Putative uncharacterized protein OS=Oryza... 59 3e-07 tr|B7FID3|B7FID3_MEDTR Putative uncharacterized protein OS=Medic... 59 3e-07 tr|B6TIC4|B6TIC4_MAIZE 40S ribosomal protein SA OS=Zea mays PE=2... 59 3e-07 tr|B6SSF3|B6SSF3_MAIZE 40S ribosomal protein SA OS=Zea mays PE=2... 59 3e-07 tr|B4FZ84|B4FZ84_MAIZE Putative uncharacterized protein OS=Zea m... 59 3e-07 tr|Q38M60|Q38M60_SOLTU Ribosome-associated protein p40-like OS=S... 57 8e-07 tr|Q308A0|Q308A0_SOLTU P40-like protein OS=Solanum tuberosum PE=... 57 8e-07 tr|B4G194|B4G194_MAIZE 40S ribosomal protein SA OS=Zea mays PE=2... 57 8e-07 tr|B4FSQ4|B4FSQ4_MAIZE Putative uncharacterized protein OS=Zea m... 57 8e-07 tr|A7P6D1|A7P6D1_VITVI Chromosome chr9 scaffold_7, whole genome ... 57 1e-06 tr|A5BUU4|A5BUU4_VITVI Putative uncharacterized protein OS=Vitis... 57 1e-06 tr|A4RUK2|A4RUK2_OSTLU Ribosomal protein Sa, component of cytoso... 57 1e-06 tr|B6T782|B6T782_MAIZE 40S ribosomal protein SA OS=Zea mays PE=2... 56 2e-06 tr|B6T6X2|B6T6X2_MAIZE 40S ribosomal protein SA OS=Zea mays PE=2... 56 2e-06
>tr|A9S9Z5|A9S9Z5_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_126323 PE=3 SV=1 Length = 305
Score = 70.5 bits (171), Expect = 9e-11 Identities = 53/159 (33%), Positives = 60/159 (37%), Gaps = 10/159 (6%) Frame = +2
Query: 2 FWMLARMVLQMRGTISPRQPWDVMVDLFFYRXXXXXXXXXXXXXXXXXXXXXXYNXXXXX 181 FW+LARMVLQMRGTIS +PWDVMVDLFFYR Y Sbjct: 167 FWLLARMVLQMRGTISAAKPWDVMVDLFFYREPDEGKDRDEEEAGAAEFAAVEY---PAP 223
Query: 182 XXXXXXXDQWG-EGGDAGNWE--XXXXXXXXXXXXXXXXEWTGXXXXXXXXXXXXXXXXX 352 QWG E +AG WE EWTG Sbjct: 224 ALGMVGDAQWGPEAAEAGQWEADASAVATGAVPAGVPAVEWTGAAVPAG----------- 272
Query: 353 XXXXXTGTYSAGMAPSG---AGWD----SAPADWNPTPQ 448 + G AP+ AGW+ +APA W P PQ Sbjct: 273 ------AGWDVGAAPAAAPPAGWETAAPAAPAGWEPAPQ 305
>tr|A9TDH1|A9TDH1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_193949 PE=3 SV=1 Length = 292
Score = 62.4 bits (150), Expect = 2e-08 Identities = 36/81 (44%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Frame = +2
Query: 2 FWMLARMVLQMRGTISPRQPWDVMVDLFFYRXXXXXXXXXXXXXXXXXXXXXXYNXXXXX 181 FW+LARMVLQMRGTIS PWDVMVDLFFYR Y Sbjct: 166 FWLLARMVLQMRGTISAAHPWDVMVDLFFYREPDEGKDREEEEGGAAEFAAVEY---AAP 222
Query: 182 XXXXXXXDQWG-EGGDAGNWE 241 QWG E +AG WE Sbjct: 223 TLALGGDAQWGPEAAEAGQWE 243
>tr|A9S4V0|A9S4V0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_105781 PE=3 SV=1 Length = 292
Score = 62.4 bits (150), Expect = 2e-08 Identities = 36/81 (44%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Frame = +2
Query: 2 FWMLARMVLQMRGTISPRQPWDVMVDLFFYRXXXXXXXXXXXXXXXXXXXXXXYNXXXXX 181 FW+LARMVLQMRGTIS PWDVMVDLFFYR Y Sbjct: 166 FWLLARMVLQMRGTISAAHPWDVMVDLFFYREPDEGKDREEEEGGAAEFAAVEY---AAP 222
Query: 182 XXXXXXXDQWG-EGGDAGNWE 241 QWG E +AG WE Sbjct: 223 TLALGGDAQWGPEAAEAGQWE 243
>tr|A9T6E0|A9T6E0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_46426 PE=3 SV=1 Length = 278
Score = 61.6 bits (148), Expect = 4e-08 Identities = 27/31 (87%), Positives = 28/31 (90%) Frame = +2
Query: 2 FWMLARMVLQMRGTISPRQPWDVMVDLFFYR 94 FW+LARMVLQMRGTIS PWDVMVDLFFYR Sbjct: 164 FWLLARMVLQMRGTISAAHPWDVMVDLFFYR 194
>tr|A9P0C9|A9P0C9_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 319
Score = 61.6 bits (148), Expect = 4e-08 Identities = 43/148 (29%), Positives = 46/148 (31%), Gaps = 2/148 (1%) Frame = +2
Query: 2 FWMLARMVLQMRGTISPRQPWDVMVDLFFYRXXXXXXXXXXXXXXXXXXXXXXYNXXXXX 181 FWMLARMVLQMRGTI P WD+MVDLFFYR Y Sbjct: 175 FWMLARMVLQMRGTILPGHKWDIMVDLFFYR-----EPEEAKEHEDEEAPVAEYTADYTA 229
Query: 182 XXXXXXXDQWGEGGDAGNWEXXXXXXXXXXXXXXXXEWTGXXXXXXXXXXXXXXXXXXXX 361 DQWG W +W G Sbjct: 230 PALALPGDQWGADIPDAQWGAPEPSAIPAVPALAASDWPGTAVPIAAEGWDTAPAPLPPA 289
Query: 362 XXTGTYSAGMAPSG--AGWDSAPADWNP 439 S P+ GWDSA W P Sbjct: 290 AEWNAASMPSIPAAPVPGWDSAQPGWTP 317
>tr|A9NV56|A9NV56_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 319
Score = 61.6 bits (148), Expect = 4e-08 Identities = 43/148 (29%), Positives = 46/148 (31%), Gaps = 2/148 (1%) Frame = +2
Query: 2 FWMLARMVLQMRGTISPRQPWDVMVDLFFYRXXXXXXXXXXXXXXXXXXXXXXYNXXXXX 181 FWMLARMVLQMRGTI P WD+MVDLFFYR Y Sbjct: 175 FWMLARMVLQMRGTILPGHKWDIMVDLFFYR-----EPEEAKEHEDEEAPVAEYTADYTA 229
Query: 182 XXXXXXXDQWGEGGDAGNWEXXXXXXXXXXXXXXXXEWTGXXXXXXXXXXXXXXXXXXXX 361 DQWG W +W G Sbjct: 230 PALALPGDQWGADIPDAQWGAPEPSAIPAVPALAASDWPGTAVPIAAEGWDTAPAPLPPA 289
Query: 362 XXTGTYSAGMAPSG--AGWDSAPADWNP 439 S P+ GWDSA W P Sbjct: 290 AEWNAASMPSIPAAQVPGWDSAQPGWTP 317
>tr|Q01CH5|Q01CH5_OSTTA B1056G08.113 gene product (ISS) OS=Ostreococcus tauri GN=Ot03g03270 PE=3 SV=1 Length = 313
Score = 60.1 bits (144), Expect = 1e-07 Identities = 26/31 (83%), Positives = 29/31 (93%) Frame = +2
Query: 2 FWMLARMVLQMRGTISPRQPWDVMVDLFFYR 94 +++LARMVLQMRGTISP PWDVMVDLFFYR Sbjct: 198 YYLLARMVLQMRGTISPANPWDVMVDLFFYR 228
>tr|A9P891|A9P891_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 312
Score = 59.3 bits (142), Expect = 2e-07 Identities = 26/31 (83%), Positives = 27/31 (87%) Frame = +2
Query: 2 FWMLARMVLQMRGTISPRQPWDVMVDLFFYR 94 FW+LARMVLQMRGTI P WDVMVDLFFYR Sbjct: 184 FWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 214
>tr|Q94HF0|Q94HF0_ORYSA Putative 40S Ribosomal protein OS=Oryza sativa GN=OSJNBa0032G08.18 PE=3 SV=1 Length = 305
Score = 58.9 bits (141), Expect = 3e-07 Identities = 26/31 (83%), Positives = 27/31 (87%) Frame = +2
Query: 2 FWMLARMVLQMRGTISPRQPWDVMVDLFFYR 94 FW+LARMVLQMRGTI P WDVMVDLFFYR Sbjct: 179 FWLLARMVLQMRGTILPGHKWDVMVDLFFYR 209
>tr|Q8H3I3|Q8H3I3_ORYSJ Os07g0616600 protein OS=Oryza sativa subsp. japonica GN=B1056G08.113 PE=2 SV=2 Length = 305
Score = 58.9 bits (141), Expect = 3e-07 Identities = 26/31 (83%), Positives = 27/31 (87%) Frame = +2
Query: 2 FWMLARMVLQMRGTISPRQPWDVMVDLFFYR 94 FW+LARMVLQMRGTI P WDVMVDLFFYR Sbjct: 179 FWLLARMVLQMRGTILPGHKWDVMVDLFFYR 209
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