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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950650
Clone id TST38A01NGRL0009_E01
Library
Length 600
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_E01. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTGAATAGCACAACCATTGTATCGGTTGCAAGCACACATGTTGGCCATAATCAAAGGGCT
AGTTCCATCCAAAGCCCAAAAGAAATCAACAATTCTAACGCTGCCTTGGATCCCAGCATT
AGGTCTAACCCTGCTTCCAACTTTAGTTTTAGCATGTCCATACCCATTCCACATGAGCAA
GAGTGGACTATTGTGCGAAATGGGTATATTGCACCCTTACCTCGCATGCAAAGACACGAG
AGTTCCAATTTGAAATGCCCTCCATGGACACCAACCGAGCTTGAGATGTTCTTACCAGAT
TTCAATGGCCGTCCAAAGCCTTTTCCTCGCAAGGGGCATCATTGGTCTGCCTCCTTTGTG
GTAAGTGTCTAGCACAACGAAGCATATTTGAAGCTTGCAGATTTAAGAGAGGATGGCGAA
AATGATGGTGGGGTTTACGCAAAGACATCCCCTGTGGCAGAAACAAAGCTTGACAAGCAA
GACATGGAAGGCAAGCTTTCTTTACTGAAATTGCTGGGCATGGAGAAATTTACCTGTTTT
AGCATGTGATGGGTACGAGTATTCTCTGATTCACATTGTTGTACATGATGTACATTTATA
■■Homology search results ■■ -
sp_hit_id P77779
Definition sp|P77779|YBFO_ECOLI Putative uncharacterized protein ybfO OS=Escherichia coli (strain K12)
Align length 42
Score (bit) 32.7
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950650|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_E01, 5'
         (600 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P77779|YBFO_ECOLI Putative uncharacterized protein ybfO OS=Es...    33   1.4  
sp|Q9LY87|RGLG2_ARATH E3 ubiquitin-protein ligase RGLG2 OS=Arabi...    32   2.5  
sp|Q9Z726|FTSK_CHLPN DNA translocase ftsK OS=Chlamydia pneumonia...    31   4.2  
sp|P34459|YMD5_CAEEL Uncharacterized protein F54H12.5 OS=Caenorh...    31   5.5  
sp|P39970|YEN5_YEAST Uncharacterized protein YER045C OS=Saccharo...    31   5.5  
sp|Q9BX66|SRBS1_HUMAN Sorbin and SH3 domain-containing protein 1...    31   5.5  
sp|Q98LU4|GFA_RHILO Glutathione-dependent formaldehyde-activatin...    31   5.5  
sp|P34419|YLZ6_CAEEL UPF0152 protein F42H10.6 OS=Caenorhabditis ...    30   9.3  
sp|Q00GL7|PSBU_KARBR Photosystem II 12 kDa extrinsic protein, ch...    30   9.3  
sp|Q54F44|NOXC_DICDI Superoxide-generating NADPH oxidase heavy c...    30   9.3  
sp|Q800B8|NOD3C_XENTR Nodal homolog 3-C OS=Xenopus tropicalis GN...    30   9.4  

>sp|P77779|YBFO_ECOLI Putative uncharacterized protein ybfO
           OS=Escherichia coli (strain K12) GN=ybfO PE=5 SV=1
          Length = 477

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +3

Query: 189 YCAKWVYCTLTSHAKTREFQFEMPSMDTNRA*DVLTRFQWPS 314
           YC KWV   LT    T +   + P MDT  A D L +  WP+
Sbjct: 390 YCRKWVKPNLTC---TPQDDSQYPGMDTKTASDYLPQTNWPT 428


>sp|Q9LY87|RGLG2_ARATH E3 ubiquitin-protein ligase RGLG2
           OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1
          Length = 468

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
 Frame = +1

Query: 136 SNFSFSMSIPIPHEQEWTIV------RNGYIA---PLPRMQRHESSNLKCPPWTPTELEM 288
           + F+ S  + IP + + TI       RNGYI    PLP   R  SS+   P   P+ L  
Sbjct: 335 TEFALSALMEIPQQYKATIELNLLGRRNGYIPERFPLPPPMRGGSSSYNSPK--PSRLPS 392

Query: 289 FLPDFNGRPKPFPRKGHHWSAS 354
           F P       P P +G+H  +S
Sbjct: 393 FKPSV----PPHPTEGYHVRSS 410


>sp|Q9Z726|FTSK_CHLPN DNA translocase ftsK OS=Chlamydia pneumoniae
           GN=ftsK PE=2 SV=1
          Length = 806

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +1

Query: 79  KEINNSNAALDPSIRSNPASNFSFSMSIPIPHEQEWTIVRNGYIAPLPR 225
           K IN  N    PS+     + FS + S P P     TI+ +G I+PLP+
Sbjct: 214 KLINRRNYLPKPSVPFVSKNPFSCTKSQPSPRRVSETIILDGSISPLPQ 262


>sp|P34459|YMD5_CAEEL Uncharacterized protein F54H12.5
           OS=Caenorhabditis elegans GN=F54H12.5 PE=2 SV=1
          Length = 880

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
 Frame = +1

Query: 10  TTIVSVASTHVGHNQRASSIQSPKEINNSNAALDPSIRSN-------PASNFSFSMSIPI 168
           TTI S  ST+   +  +S+  S   +    + +DP  +S+        AS+ +   SIP 
Sbjct: 366 TTISSSDSTNESSSITSSTDSSTNSMLPETSTIDPGSQSSSYSGNSLTASSTTSDPSIPN 425

Query: 169 PHEQEWTIVRNGYIAPLPRMQRHESSNLKCPPWTPTELEMFLPDFN 306
           P  +  T   N      P  Q H+ SN   PP++     M +PDF+
Sbjct: 426 PTRKRITRQPN-----YPPWQPHQPSNPNPPPFS-----MNVPDFH 461


>sp|P39970|YEN5_YEAST Uncharacterized protein YER045C
           OS=Saccharomyces cerevisiae GN=YER045C PE=1 SV=1
          Length = 489

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 49  NQRASSIQSPKEINNSNAALDPSIRSNPASNFSFSMSIPIPHEQEWTI 192
           + +A    +P+++ N +AA+ PS  SN   N      +P PHEQ   I
Sbjct: 133 SSKAQQNPNPQQVANPSAAIYPSFSSNELQN------VPQPHEQATVI 174


>sp|Q9BX66|SRBS1_HUMAN Sorbin and SH3 domain-containing protein 1
            OS=Homo sapiens GN=SORBS1 PE=1 SV=2
          Length = 1292

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 28/128 (21%), Positives = 52/128 (40%)
 Frame = +1

Query: 73   SPKEINNSNAALDPSIRSNPASNFSFSMSIPIPHEQEWTIVRNGYIAPLPRMQRHESSNL 252
            +P  + +S  AL P + +  +   S ++ +P       ++     + PLP    + + +L
Sbjct: 966  APSSLPHSRRALSPEMHAVTSEWISLTVGVP----GRRSLALTPPLPPLPEASIYNTDHL 1021

Query: 253  KCPPWTPTELEMFLPDFNGRPKPFPRKGHHWSASFVVSV*HNEAYLKLADLREDGENDGG 432
               P     L + LP  +   +P PR      A       ++ A    A L  +G  DGG
Sbjct: 1022 ALSPRASPSLSLSLPHLSWSDRPTPRSVASPLALPSPHKTYSLAPTSQASLHMNG--DGG 1079

Query: 433  VYAKTSPV 456
            V+  +S +
Sbjct: 1080 VHTPSSGI 1087


>sp|Q98LU4|GFA_RHILO Glutathione-dependent formaldehyde-activating
           enzyme OS=Rhizobium loti GN=gfa PE=3 SV=2
          Length = 189

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +1

Query: 409 EDGENDGGVYAKTSPVAETKLDKQDMEGKLSLLKLLGMEKFTCFS 543
           EDG +  G  A  S + E+ +D + M+G  + L+ +G+E + C +
Sbjct: 125 EDGWSPPGFTAFVSSIIESGVDPKRMDGIRAQLRTIGLEPYDCLN 169


>sp|P34419|YLZ6_CAEEL UPF0152 protein F42H10.6 OS=Caenorhabditis
           elegans GN=F42H10.6 PE=1 SV=2
          Length = 169

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 161 YPFHMSKSGLLCEMGILHPYLACKDTRVPI*NALHGHQ 274
           YP  ++KS L+CEM + H +L  K T       LHG Q
Sbjct: 45  YPVEVTKSKLVCEMVVQHQHLNSKGT-------LHGGQ 75


>sp|Q00GL7|PSBU_KARBR Photosystem II 12 kDa extrinsic protein,
           chloroplastic OS=Karenia brevis GN=psbU PE=2 SV=1
          Length = 159

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 496 ACLPCLACQALFLPQGMSLRKPHHHFRHPLLNLQASNML 380
           ACL C+   A F P  + + KP H  + P+++  A   L
Sbjct: 9   ACLACMGLAAAFSPATLGVNKPSHRQQAPVMSQVARREL 47


>sp|Q54F44|NOXC_DICDI Superoxide-generating NADPH oxidase heavy chain
            subunit C OS=Dictyostelium discoideum GN=noxC PE=2 SV=1
          Length = 1142

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 294  TRFQWPSKAFSSQGASLVCLLCGKCLAQRSIFEACRF 404
            T FQ+ SK +S +  S+ C  CG     + ++E CR+
Sbjct: 1090 TIFQYYSKKYSGESISVFC--CGPSQLSKELYEKCRY 1124
tr_hit_id B0D443
Definition tr|B0D443|B0D443_LACBS NAD-aldehyde dehydrogenase OS=Laccaria bicolor (strain S238N-H82)
Align length 70
Score (bit) 35.4
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950650|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_E01, 5'
         (600 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0D443|B0D443_LACBS NAD-aldehyde dehydrogenase OS=Laccaria bi...    35   2.6  
tr|A3WQP3|A3WQP3_9GAMM Acylaminoacyl-peptidase OS=Idiomarina bal...    35   4.4  
tr|Q2JUV9|Q2JUV9_SYNJA ATP-dependent DNA helicase PcrA OS=Synech...    34   7.5  
tr|Q7XL55|Q7XL55_ORYSJ OSJNBa0056L23.2 protein OS=Oryza sativa s...    34   7.5  
tr|Q54BK4|Q54BK4_DICDI Putative uncharacterized protein OS=Dicty...    33   9.8  

>tr|B0D443|B0D443_LACBS NAD-aldehyde dehydrogenase OS=Laccaria
           bicolor (strain S238N-H82) GN=LACBIDRAFT_248281 PE=4
           SV=1
          Length = 519

 Score = 35.4 bits (80), Expect = 2.6
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
 Frame = -1

Query: 231 LHAR*GCNI---PISH----NSPLLLMWNGYGHAKTKVGSRVRPNAGIQGSVRIVDFFWA 73
           LH +  C+I    I H    ++ +L     YGHA    G+ V P   I  SV   DF W 
Sbjct: 345 LHTKAACDIYDKTIQHLQAIDADILTGGKRYGHASLSAGNFVEPTIAIPKSVNPKDFIWK 404

Query: 72  LDGTSPLIMA 43
            +  +P++ A
Sbjct: 405 TETFAPILNA 414


>tr|A3WQP3|A3WQP3_9GAMM Acylaminoacyl-peptidase OS=Idiomarina
           baltica OS145 GN=OS145_04935 PE=4 SV=1
          Length = 664

 Score = 34.7 bits (78), Expect = 4.4
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
 Frame = +1

Query: 19  VSVASTHVGHNQRASSIQSPKEINNSNAALDPSIRSNPASNFSFSMSIPIPHEQE----W 186
           ++++++ V   +R   +Q+  ++     A  P++  +         S+ I H+Q+    W
Sbjct: 1   MTLSASAVAQTERTLQLQNVFDLEY---AASPALHPSGDYGVFVRQSMDIKHDQKTGRLW 57

Query: 187 TIVRNGYIAPLPRMQRHESSNLKCPPWTPTELEM-FLPDFNGRPK 318
           T+  NG I PL     HE S    P W+P    + F+ D +G P+
Sbjct: 58  TVKPNGDIRPLTGDSAHEWS----PVWSPDGKRLAFISDASGSPQ 98


>tr|Q2JUV9|Q2JUV9_SYNJA ATP-dependent DNA helicase PcrA
           OS=Synechococcus sp. (strain JA-3-3Ab) GN=pcrA PE=4 SV=1
          Length = 776

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 220 PRMQRHESSNLKCPPWTPTELEMFLPDFNGR 312
           PR  R+  SN K   WTP +LE   P+F GR
Sbjct: 170 PRSVRYAISNAKNQGWTPADLERHQPNFRGR 200


>tr|Q7XL55|Q7XL55_ORYSJ OSJNBa0056L23.2 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0056L23.2 PE=4 SV=2
          Length = 535

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 27/96 (28%), Positives = 37/96 (38%)
 Frame = +1

Query: 37  HVGHNQRASSIQSPKEINNSNAALDPSIRSNPASNFSFSMSIPIPHEQEWTIVRNGYIAP 216
           H GH  R   +        +   + P + SNP  N S   S  + HE+ W    NG I  
Sbjct: 418 HSGHYARRRQVTRLVVTGANAVPVRPHVNSNPYGNLSEVDSEDMKHEKFW----NGSITE 473

Query: 217 LPRMQRHESSNLKCPPWTPTELEMFLPDFNGRPKPF 324
           LP   +   S  K  PW+ +  E       G+ K F
Sbjct: 474 LP---QPSLSQPKGAPWSKSGEEKIPSATGGQAKQF 506


>tr|Q54BK4|Q54BK4_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0192024 PE=4 SV=1
          Length = 2014

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
 Frame = +1

Query: 46  HNQRASSIQSPKEINNSNAALDPSIRSNPASNFSFSMSIPIPHEQEWTIVRNGYIA-PLP 222
           +NQ   + Q+ +  NN+N   + +  +N  +N + + + PI      + V    +A  LP
Sbjct: 304 NNQNNQNNQNNQNSNNNNNNNNNNNNNNNNNNNNINTASPITQTSPTSSVSPLSLANKLP 363

Query: 223 RMQRHESSNLKCPPWTPTELEMFLPDFNGRPKPFPRKGHH 342
           + Q+H+++N    P TP    +  P  N  P   P  G H
Sbjct: 364 QQQQHQNNNNLQAPQTPNSGPITTP--NQHPTSTPAHGPH 401