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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950652
Clone id TST38A01NGRL0009_E03
Library
Length 658
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_E03. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CTGGATGAGGGTGCTTTCAAGATTGCCATAAAGGATAACTATGTCCGTGCAAATAGGTTC
AAGTGTGAACTGAATTCAGAACAGGTTGGTAGATTGATAAAGCTCTTCAGGCCCCTGGAC
TCCAGAGGTTTGCCAGAGCCAAAGCCTTCTAAGGAGGCAAAGAAAGATTTCACTCCAAAA
GGCAAGTTGCCACGGGGGCCGCCACCTCGGTCTCTGCGCAACAGGGGGCCTCCACCTCGT
TTTTCAGGTCCTGCTCCTCCCAGAGAACGAGTCTACAAGGACTATGCGCCGCAGTACTCT
AGGGAGCGCCATGCTTCAGAAATTATCCCCCCTAGCTATGCCCTTGGTCCAGATGTGGCC
CATGCTTTTTTTTAGTTCTCCCCCCAGAGGCACCTCAGACAAGTCCAAAAAAAGGGGGGG
GACAGGAGGGCTTATCTACTCGATCCTGTGGTTGAAGCTTCAATTGCTCGTAAACGATAC
TTGGAGGATGTTTATTTGGCGGAACAGCAAGCCTTGGCTAAAAGGCCTCTTTTACCTGAA
GTTTACAGAGATTTGGAGTACCAAAGAGAGGCCCCATATCGGGGATATGCAGATGGTTTG
CATGCACTCCCTTCCGCAGCTTTGCCTTATGATCCGCGGGGCTACTAGTCTTTGACTA
■■Homology search results ■■ -
sp_hit_id P71485
Definition sp|P71485|EMBA_MYCAV Probable arabinosyltransferase A OS=Mycobacterium avium
Align length 79
Score (bit) 34.7
E-value 0.46
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950652|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_E03, 5'
         (658 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P71485|EMBA_MYCAV Probable arabinosyltransferase A OS=Mycobac...    35   0.46 
sp|Q6AW69|CGNL1_MOUSE Cingulin-like protein 1 OS=Mus musculus GN...    35   0.46 
sp|Q0VF96|CGNL1_HUMAN Cingulin-like protein 1 OS=Homo sapiens GN...    32   2.3  
sp|P16846|UL23_HCMVA Tegument protein UL23 OS=Human cytomegalovi...    31   6.6  
sp|P56206|SYG_THET8 Glycyl-tRNA synthetase OS=Thermus thermophil...    30   8.6  

>sp|P71485|EMBA_MYCAV Probable arabinosyltransferase A
           OS=Mycobacterium avium GN=embA PE=3 SV=1
          Length = 1108

 Score = 34.7 bits (78), Expect = 0.46
 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
 Frame = -2

Query: 297 VLRRIVLVDSFSGRSRT*KT--RWRPPVAQRPRWRPPWQLAFWSEIFL-------CLLRR 145
           VL  IV +     RSR   T   WR P+A   R+RP   LA W  + L        +L  
Sbjct: 213 VLTAIVALAVLDRRSRGGGTLINWRSPIAWLSRYRPGTHLANWRRVGLATWIADAAVLAT 272

Query: 144 LWLWQTSGVQGPEELYQST 88
           L LW   G    ++ Y  T
Sbjct: 273 LLLWHVVGATSSDDGYNLT 291


>sp|Q6AW69|CGNL1_MOUSE Cingulin-like protein 1 OS=Mus musculus
            GN=Cgnl1 PE=1 SV=2
          Length = 1298

 Score = 34.7 bits (78), Expect = 0.46
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = +1

Query: 469  RKRYLEDVYLAEQQALAKRPLLPEVYRDLEYQREA 573
            ++  L+D   AE++AL KR LL +  +DLEY+ EA
Sbjct: 1014 KEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEA 1048


>sp|Q0VF96|CGNL1_HUMAN Cingulin-like protein 1 OS=Homo sapiens
            GN=CGNL1 PE=1 SV=1
          Length = 1302

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 481  LEDVYLAEQQALAKRPLLPEVYRDLEYQREA 573
            L D   A+ +AL KR LL +  +DLEY+ EA
Sbjct: 1021 LRDYQRAQDEALTKRQLLEQTLKDLEYELEA 1051


>sp|P16846|UL23_HCMVA Tegument protein UL23 OS=Human cytomegalovirus
           (strain AD169) GN=UL23 PE=3 SV=2
          Length = 284

 Score = 30.8 bits (68), Expect = 6.6
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 237 RWRPPVAQRPRWRPPWQLAF-WSEIFLCLLRRLW 139
           RWRPP   RP W+P  ++A  W +    ++RR W
Sbjct: 14  RWRPPKTSRP-WKPGQRVALVWPKDRCLVIRRRW 46


>sp|P56206|SYG_THET8 Glycyl-tRNA synthetase OS=Thermus thermophilus
           (strain HB8 / ATCC 27634 / DSM 579) GN=glyQS PE=1 SV=3
          Length = 506

 Score = 30.4 bits (67), Expect = 8.6
 Identities = 24/76 (31%), Positives = 34/76 (44%)
 Frame = +1

Query: 430 AYLLDPVVEASIARKRYLEDVYLAEQQALAKRPLLPEVYRDLEYQREAPYRGYADGLHAL 609
           A   DP+V+  I +KRY  D  L EQ       +L  +YR +E + E         LHAL
Sbjct: 82  ATFADPMVDNRITKKRYRLDHLLKEQ----PEEVLKRLYRAMEVEEE--------NLHAL 129

Query: 610 PSAALPYDPRGY*SLT 657
             A +    R   ++T
Sbjct: 130 VQAMMQAPERAGGAMT 145
tr_hit_id A7QX14
Definition tr|A7QX14|A7QX14_VITVI Chromosome chr14 scaffold_211, whole genome shotgun sequence OS=Vitis vinifera
Align length 58
Score (bit) 53.5
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950652|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_E03, 5'
         (658 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QX14|A7QX14_VITVI Chromosome chr14 scaffold_211, whole geno...    54   1e-05
tr|B8LQS0|B8LQS0_PICSI Putative uncharacterized protein OS=Picea...    53   1e-05
tr|B6UA70|B6UA70_MAIZE Putative uncharacterized protein OS=Zea m...    48   6e-04
tr|A7NYZ0|A7NYZ0_VITVI Chromosome chr6 scaffold_3, whole genome ...    47   8e-04
tr|A5CAT2|A5CAT2_VITVI Putative uncharacterized protein OS=Vitis...    47   8e-04
tr|B8LNW7|B8LNW7_PICSI Putative uncharacterized protein OS=Picea...    47   0.001
tr|A9NVJ6|A9NVJ6_PICSI Putative uncharacterized protein OS=Picea...    47   0.001
tr|Q67WK6|Q67WK6_ORYSJ Os06g0227200 protein OS=Oryza sativa subs...    46   0.002
tr|B8B489|B8B489_ORYSI Putative uncharacterized protein OS=Oryza...    46   0.002
tr|A3B9V7|A3B9V7_ORYSJ Putative uncharacterized protein OS=Oryza...    46   0.002
tr|A7QT80|A7QT80_VITVI Chromosome chr1 scaffold_166, whole genom...    44   0.012
tr|A5ADC6|A5ADC6_VITVI Putative uncharacterized protein OS=Vitis...    44   0.012
tr|Q84W28|Q84W28_ARATH Putative uncharacterized protein At2g3291...    41   0.057
tr|O48774|O48774_ARATH Putative uncharacterized protein At2g3291...    41   0.057
tr|Q6ZGT6|Q6ZGT6_ORYSJ Os02g0745600 protein OS=Oryza sativa subs...    40   0.097
tr|A2X9K7|A2X9K7_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.097
tr|B6T8I6|B6T8I6_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.17 
tr|A5BDJ5|A5BDJ5_VITVI Putative uncharacterized protein OS=Vitis...    36   1.8  
tr|A2Q136|A2Q136_MEDTR Putative uncharacterized protein OS=Medic...    35   3.1  
tr|B6KNK1|B6KNK1_TOXGO Putative uncharacterized protein OS=Toxop...    35   4.0  
tr|B2RY19|B2RY19_MOUSE Cgnl1 protein OS=Mus musculus GN=Cgnl1 PE...    35   5.3  
tr|B2RSU6|B2RSU6_MOUSE Cingulin-like 1 OS=Mus musculus GN=Cgnl1 ...    35   5.3  
tr|A0Q9D0|A0Q9D0_MYCA1 Probable arabinosyltransferase C OS=Mycob...    35   5.3  
tr|Q8VZG6|Q8VZG6_ARATH AT5g61910/k22g18_30 (Putative uncharacter...    34   9.1  
tr|Q3E873|Q3E873_ARATH Uncharacterized protein At5g61910.3 OS=Ar...    34   9.1  
tr|A3LWR0|A3LWR0_PICST Predicted protein OS=Pichia stipitis GN=P...    34   9.1  

>tr|A7QX14|A7QX14_VITVI Chromosome chr14 scaffold_211, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00008906001
           PE=4 SV=1
          Length = 602

 Score = 53.5 bits (127), Expect = 1e-05
 Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
 Frame = +1

Query: 1   LDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLFRP--LDSRGLPEPKPSKEAKKD 168
           L E  FK AIKDNY + N+FK EL  EQV +L+KLFRP  + S+ LP   P +   ++
Sbjct: 219 LPESIFKKAIKDNYDKTNKFKTELTMEQVKKLMKLFRPTEIHSKALPIHSPPRARARE 276


>tr|B8LQS0|B8LQS0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 394

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
 Frame = +1

Query: 1   LDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLFRPL---DSRGLPEPKPSKEAK 162
           L E  FK+AIKDNY    +FK ELN+EQV  L++LF+P+   +SRG  + +P + ++
Sbjct: 202 LSEEKFKVAIKDNYYGKKKFKFELNAEQVKNLVQLFKPVPAQNSRGPRDSRPGRPSR 258


>tr|B6UA70|B6UA70_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 507

 Score = 47.8 bits (112), Expect = 6e-04
 Identities = 24/49 (48%), Positives = 33/49 (67%)
 Frame = +1

Query: 1   LDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLFRPLDSRGLPEPKP 147
           + E +FK AIK+NY    RF  ELNS+QV RL+ +F+P+D   LP+  P
Sbjct: 265 IPESSFKHAIKENYSSKGRFTQELNSKQVQRLLAMFKPID---LPQSAP 310


>tr|A7NYZ0|A7NYZ0_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00024305001
           PE=4 SV=1
          Length = 386

 Score = 47.4 bits (111), Expect = 8e-04
 Identities = 27/50 (54%), Positives = 33/50 (66%)
 Frame = +1

Query: 1   LDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLFRPLDSRGLPEPKPS 150
           L E  FK  IKDNY + N+F CELNS+QV  L KLF+   S+G P+ K S
Sbjct: 86  LAEEKFKKVIKDNYYKKNKFNCELNSDQVKNLCKLFQAA-SKG-PKSKDS 133


>tr|A5CAT2|A5CAT2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_005395 PE=4 SV=1
          Length = 669

 Score = 47.4 bits (111), Expect = 8e-04
 Identities = 27/50 (54%), Positives = 33/50 (66%)
 Frame = +1

Query: 1   LDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLFRPLDSRGLPEPKPS 150
           L E  FK  IKDNY + N+F CELNS+QV  L KLF+   S+G P+ K S
Sbjct: 369 LAEEKFKKVIKDNYYKKNKFNCELNSDQVKNLCKLFQAA-SKG-PKSKDS 416


>tr|B8LNW7|B8LNW7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 461

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
 Frame = +1

Query: 1   LDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLFRPL---DSR 126
           L E  FK AIKDNY   N+F+ ELN++QV +L +LFRP+   DSR
Sbjct: 166 LSEDIFKKAIKDNYDGKNKFRFELNAQQVKKLSELFRPVPRFDSR 210


>tr|A9NVJ6|A9NVJ6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 458

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
 Frame = +1

Query: 1   LDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLFRPL---DSR 126
           L E  FK AIKDNY   N+F+ ELN++QV +L +LFRP+   DSR
Sbjct: 163 LSEDIFKKAIKDNYDGKNKFRFELNAQQVKKLSELFRPVPRFDSR 207


>tr|Q67WK6|Q67WK6_ORYSJ Os06g0227200 protein OS=Oryza sativa subsp.
           japonica GN=P0425F05.13 PE=2 SV=1
          Length = 704

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 25/51 (49%), Positives = 32/51 (62%)
 Frame = +1

Query: 1   LDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLFRPLDSRGLPEPKPSK 153
           L E  FK AI++NY   ++F  ELNS QV RLI LF   +S  +P+P P K
Sbjct: 336 LPESRFKDAIRENYSAKSKFNPELNSRQVHRLIALF---ESVSVPQPAPQK 383


>tr|B8B489|B8B489_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_22240 PE=4 SV=1
          Length = 704

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 25/51 (49%), Positives = 32/51 (62%)
 Frame = +1

Query: 1   LDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLFRPLDSRGLPEPKPSK 153
           L E  FK AI++NY   ++F  ELNS QV RLI LF   +S  +P+P P K
Sbjct: 336 LPESRFKDAIRENYSAKSKFNPELNSRQVHRLIALF---ESVSVPQPAPQK 383


>tr|A3B9V7|A3B9V7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019829 PE=4 SV=1
          Length = 706

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 25/51 (49%), Positives = 32/51 (62%)
 Frame = +1

Query: 1   LDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLFRPLDSRGLPEPKPSK 153
           L E  FK AI++NY   ++F  ELNS QV RLI LF   +S  +P+P P K
Sbjct: 336 LPESRFKDAIRENYSAKSKFNPELNSRQVHRLIALF---ESVSVPQPAPQK 383