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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950661
Clone id TST38A01NGRL0009_E13
Library
Length 663
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_E13. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
TCCGCTTCTGCGACCCCCAATTTGAAAGGTTCTCTCTCTCTCTCTCATCACACATATCTG
CACAGCCTTTGCGACAGAGAGGTGGAGGGAGGCATGCATAGCCTTGAGAGAGGTAGGCTC
GATGATGGCATAACAGGTTGATGAGGGATGCAGGCTCCTACGAGCAGGTCCTCCTGTGGC
ATTCTCTCTCTCTCTCTCTCTCCCCTGTCCAATCAAAAGATTGGTGCAACTTCAAGTGTA
GGCAGTCCTATTGCTTCAATGTGCTCAACAATGCTGCGATAGGACCTAACAAGCCACCTG
CAGACATGCCGTCTTGGAAAGCAGCCACACAAAGAAGTCAATACTGAGATAAACAAATCA
GGTACTGGGTTTGCTGACAAGTTGGGGAGGCACACGTCCACTCTCTGCGTCGTCAACAGA
CAGGCGACCCCAACCCCCTCTCACCTCCNAAGCTCTGCCCAGCTGTTAAATGATTGATAT
CCCCTTCCTGCGCCCACTCTCCAAGTAAGCATTTTCTCGGCCTTTGCCTTCTTGGGTTCT
CTATCANGGAGCTAAAGATAACTATCANGCATGTCANAAGCAGTGAACTTTCAAAGTTCA
AGAGCCTGGCAGTATGATGTGCAGATGGCAGGTCCACATCTACACTTCAGTATGCATTTC
TCA
■■Homology search results ■■ -
sp_hit_id Q5DTZ0
Definition sp|Q5DTZ0|K1305_MOUSE Integrase catalytic domain-containing protein KIAA1305 OS=Mus musculus
Align length 53
Score (bit) 31.2
E-value 5.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950661|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_E13, 5'
         (663 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5DTZ0|K1305_MOUSE Integrase catalytic domain-containing prot...    31   5.1  
sp|Q7Z442|PK1L2_HUMAN Polycystic kidney disease protein 1-like 2...    31   6.7  
sp|A5G0M4|METE_ACICJ 5-methyltetrahydropteroyltriglutamate--homo...    30   8.7  

>sp|Q5DTZ0|K1305_MOUSE Integrase catalytic domain-containing protein
            KIAA1305 OS=Mus musculus GN=Kiaa1305 PE=1 SV=2
          Length = 1840

 Score = 31.2 bits (69), Expect = 5.1
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = -2

Query: 209  DRGERERERMPQEDLLVGACIPHQPVMPSSSLPLSRLCMPPSTSLSQRLCRYV 51
            D+G+RE E      LL G    +Q + P SS+P     +PPS+ LS  +C +V
Sbjct: 1207 DKGKRELEL----SLLQGLLGENQLLTPPSSMPRVFQPLPPSSDLSTFICVHV 1255


>sp|Q7Z442|PK1L2_HUMAN Polycystic kidney disease protein 1-like 2
           OS=Homo sapiens GN=PKD1L2 PE=1 SV=3
          Length = 2459

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = -1

Query: 225 TNLLIGQGRERERENATGGPARRSLHPSSTCYAIIEPTSLKAMHASLHLSVAKAVQICVM 46
           T  L+G GR R    ATG     ++  + T + +   + L+A  AS HL + + + I + 
Sbjct: 414 TQKLMGPGRHRLEIQATGNTTTSTISRNITVHLVELLSGLQASWASDHLELGQDLLITIS 473

Query: 45  ----RERERTFQIGG 13
                  E TF++ G
Sbjct: 474 LAQGTPEELTFEVAG 488


>sp|A5G0M4|METE_ACICJ
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase OS=Acidiphilium cryptum (strain JF-5)
           GN=metE PE=3 SV=1
          Length = 769

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = -2

Query: 383 NLSANPVPDLFISVLTSLCGCF-----PRRHVCRWLVRSYRSIVEHIEAIGLPTLEV 228
           +L+A PV  +    +T L   F     PR  VCR +  + R  V  +EA GL  ++V
Sbjct: 551 SLTARPVKGMLTGPVTMLQWSFVRDDLPRETVCRQIALALRDEVADLEAAGLAIIQV 607
tr_hit_id A5C7D8
Definition tr|A5C7D8|A5C7D8_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 87
Score (bit) 45.4
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950661|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_E13, 5'
         (663 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5C7D8|A5C7D8_VITVI Putative uncharacterized protein OS=Vitis...    45   0.003
tr|A7QFS0|A7QFS0_VITVI Chromosome undetermined scaffold_89, whol...    42   0.045
tr|B2G3F3|B2G3F3_CHICK B-lec OS=Gallus gallus GN=Blec PE=4 SV=1        40   0.13 
tr|Q6ZYP6|Q6ZYP6_CHICK B-lec protein (C-type lectin-like recepto...    40   0.17 
tr|Q6ZYP3|Q6ZYP3_CHICK B-lec protein (C-type lectin-like recepto...    40   0.17 
tr|B5BSC5|B5BSC5_CHICK C-type lectin-like receptor OS=Gallus gal...    40   0.17 
tr|B5BSB1|B5BSB1_CHICK C-type lectin-like receptor OS=Gallus gal...    40   0.17 
tr|B2G3E7|B2G3E7_CHICK B-lec OS=Gallus gallus GN=Blec PE=4 SV=1        40   0.17 
tr|A5HUL1|A5HUL1_CHICK C-type lectin-like receptor (B-lec) OS=Ga...    40   0.17 
tr|B7FKL9|B7FKL9_MEDTR Putative uncharacterized protein OS=Medic...    39   0.22 
tr|B7FHJ4|B7FHJ4_MEDTR Putative uncharacterized protein OS=Medic...    37   0.84 
tr|B5BSS6|B5BSS6_CHICK C-type lectin-like receptor OS=Gallus gal...    37   1.1  
tr|A7QMK6|A7QMK6_VITVI Chromosome chr19 scaffold_126, whole geno...    37   1.1  
tr|Q9SAK5|Q9SAK5_ARATH T8K14.15 protein OS=Arabidopsis thaliana ...    36   1.9  
tr|Q94AW3|Q94AW3_ARATH At1g79430/T8K14_15 OS=Arabidopsis thalian...    35   4.2  
tr|A5ASR1|A5ASR1_VITVI Putative uncharacterized protein OS=Vitis...    35   4.2  
tr|Q76LK0|Q76LK0_COTJA C-type lectin B-lec homologous OS=Coturni...    34   7.1  
tr|B1VER4|B1VER4_CORU7 Putative ABC transport system, ATP-bindin...    34   9.2  
tr|A9V7Z4|A9V7Z4_MONBE Predicted protein OS=Monosiga brevicollis...    34   9.3  

>tr|A5C7D8|A5C7D8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_002732 PE=4 SV=1
          Length = 253

 Score = 45.4 bits (106), Expect = 0.003
 Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
 Frame = +1

Query: 205 LSNQKIGATSSVGSPIASMCSTMLR*---------DLTSHLQTCRLGKQPHKEVNTEINK 357
           L  + + A + +G P  +   T++R           L SHLQ  RLGKQPHK+ N +  K
Sbjct: 32  LHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNDQAVK 91

Query: 358 SGTGFADKLGRHTSTLCVVNRQATPTP 438
            G   A  LG          R ATPTP
Sbjct: 92  DGEKAASALGN--------QRNATPTP 110


>tr|A7QFS0|A7QFS0_VITVI Chromosome undetermined scaffold_89, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00037529001 PE=4 SV=1
          Length = 243

 Score = 41.6 bits (96), Expect = 0.045
 Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
 Frame = +1

Query: 205 LSNQKIGATSSVGSPIASMCSTMLR*---------DLTSHLQTCRLGKQPHKEVNTEINK 357
           L  + + A + +G P  +   T++R           L SHLQ  RLGKQPHK+ N +  K
Sbjct: 32  LHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNDQAVK 91

Query: 358 SGTGFADKLGRHTSTLCVVNRQATPTP 438
            G   A  LG          R ATPTP
Sbjct: 92  DGEK-ASALGN--------QRNATPTP 109


>tr|B2G3F3|B2G3F3_CHICK B-lec OS=Gallus gallus GN=Blec PE=4 SV=1
          Length = 188

 Score = 40.0 bits (92), Expect = 0.13
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -3

Query: 499 EWAQEGDINHLTAGQSXG-----GERGLGSPVC*RRREWTCASPTCQQTQYLICLS 347
           EW     ++HL   Q  G     G+ GL S  C  RR W C  P  Q+ +   C+S
Sbjct: 132 EWVNHSSLSHLFQVQGDGLCAYLGDAGLSSSHCSARRNWVCTKPALQKPRKNFCIS 187


>tr|Q6ZYP6|Q6ZYP6_CHICK B-lec protein (C-type lectin-like receptor)
           OS=Gallus gallus GN=B-lec PE=2 SV=1
          Length = 188

 Score = 39.7 bits (91), Expect = 0.17
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -3

Query: 499 EWAQEGDINHLTAGQSXG-----GERGLGSPVC*RRREWTCASPTCQQTQYLICLS 347
           EW     ++HL   Q  G     G+ GL S  C  RR W C  P  Q+ +   C+S
Sbjct: 132 EWVNRSPLSHLFQVQGDGLCAYLGDAGLSSSHCSARRNWVCTKPALQKPRKNFCIS 187


>tr|Q6ZYP3|Q6ZYP3_CHICK B-lec protein (C-type lectin-like receptor)
           OS=Gallus gallus GN=B-lec PE=2 SV=1
          Length = 188

 Score = 39.7 bits (91), Expect = 0.17
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -3

Query: 499 EWAQEGDINHLTAGQSXG-----GERGLGSPVC*RRREWTCASPTCQQTQYLICLS 347
           EW     ++HL   Q  G     G+ GL S  C  RR W C  P  Q+ +   C+S
Sbjct: 132 EWVNRSPLSHLFQVQGDGLCAYLGDAGLSSSHCSTRRNWVCTKPALQKPRKNFCIS 187


>tr|B5BSC5|B5BSC5_CHICK C-type lectin-like receptor OS=Gallus gallus
           GN=Blec1 PE=4 SV=1
          Length = 188

 Score = 39.7 bits (91), Expect = 0.17
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -3

Query: 499 EWAQEGDINHLTAGQSXG-----GERGLGSPVC*RRREWTCASPTCQQTQYLICLS 347
           EW     ++HL   Q  G     G+ GL S  C  RR W C  P  Q+ +   C+S
Sbjct: 132 EWVNRSPLSHLFQVQGDGLCAYLGDAGLSSSHCSARRNWVCTKPALQKPRKNFCIS 187


>tr|B5BSB1|B5BSB1_CHICK C-type lectin-like receptor OS=Gallus gallus
           GN=Blec1 PE=4 SV=1
          Length = 188

 Score = 39.7 bits (91), Expect = 0.17
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -3

Query: 499 EWAQEGDINHLTAGQSXG-----GERGLGSPVC*RRREWTCASPTCQQTQYLICLS 347
           EW     ++HL   Q  G     G+ GL S  C  RR W C  P  Q+ +   C+S
Sbjct: 132 EWVNRSPLSHLFQVQGDGLCAYLGDAGLSSSHCSARRNWVCTKPALQKPRKNFCIS 187


>tr|B2G3E7|B2G3E7_CHICK B-lec OS=Gallus gallus GN=Blec PE=4 SV=1
          Length = 188

 Score = 39.7 bits (91), Expect = 0.17
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -3

Query: 499 EWAQEGDINHLTAGQSXG-----GERGLGSPVC*RRREWTCASPTCQQTQYLICLS 347
           EW     ++HL   Q  G     G+ GL S  C  RR W C  P  Q+ +   C+S
Sbjct: 132 EWVNRSPLSHLFQVQGDGLCAYLGDAGLSSSHCSARRNWVCTKPALQKPRKNFCIS 187


>tr|A5HUL1|A5HUL1_CHICK C-type lectin-like receptor (B-lec)
           OS=Gallus gallus GN=Blec1 PE=4 SV=1
          Length = 188

 Score = 39.7 bits (91), Expect = 0.17
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -3

Query: 499 EWAQEGDINHLTAGQSXG-----GERGLGSPVC*RRREWTCASPTCQQTQYLICLS 347
           EW     ++HL   Q  G     G+ GL S  C  RR W C  P  Q+ +   C+S
Sbjct: 132 EWVNRSPLSHLFQVQGDGLCAYLGDAGLSSSHCSARRNWVCTKPALQKPRKNFCIS 187


>tr|B7FKL9|B7FKL9_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 345

 Score = 39.3 bits (90), Expect = 0.22
 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
 Frame = +1

Query: 205 LSNQKIGATSSVGSPIASMCSTMLR*---------DLTSHLQTCRLGKQPHKEVNTEINK 357
           L  + + A + +G P  +   T++R           L SHLQ  RLGKQPHKE N +  K
Sbjct: 46  LHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNEQSIK 105

Query: 358 SGTGF-ADKLGRHTST 402
            G    A +L R+T T
Sbjct: 106 DGMRVSAFELQRNTGT 121