DK950663 |
Clone id |
TST38A01NGRL0009_E15 |
Library |
TST38 |
Length |
657 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_E15. 5' end sequence. |
Accession |
DK950663 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
CGTTCGAGAATTCGGCTCCTGCTCCGCCCCCCGGCGCGGTCGGAAGGCAGGCGGTGGCGT TCAAAATAGCGGGAGACAAGGGCGCCCTCTACAATTGCAACTTCCTGGGCGCTCAAGACA CTCTCTACGACGACCACGGCCGCCATTACTTTGAGAATTGCTACATTCAAGGCTCCATCG ACTTCATTTTTGGGGATGGGCAATCGCTGTATAAGGGTTGCCAGTTGCGCACTTTATCAA TAAACCCAGGTTCCCTGACAGCGCAGAAGAGGGCCAGCCCCTCATCCAGAACGGGCTTCT CATTTGTTGATTGTAGAGTGGACGGTTCAGGAGTGCTGTATCTGGGGCGCGCCTGGGGAG CATACTCGCGGGTCGTCTTCTCCTACACATACTTAGGCAATGTCATCATCCCCAAAGGCT GGTACAATTGGGGTGTATCCGGCAGAGAAAAGACTGTGTATTACGGGCAGTACAAGTGCT CGGGGCCAGGGGCCAACCAGAATGGACGGGTGGCCTGGGCACATGAGCTCAGTGACGCGG AAGCTGCTCCCTTTCAATCCCTCAATTTCATCGATGGGGCGTCTTGGCTTCAATCTTGAA CATACCTCTCTCTCTCTCTCTCTCTACAAAGCAATATATATTGAAATTTTGCACCTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q43867 |
Definition |
sp|Q43867|PME1_ARATH Pectinesterase-1 OS=Arabidopsis thaliana |
Align length |
197 |
Score (bit) |
139.0 |
E-value |
1.0e-32 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950663|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0009_E15, 5' (657 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q43867|PME1_ARATH Pectinesterase-1 OS=Arabidopsis thaliana GN... 139 1e-32 sp|P83948|PME3_CITSI Pectinesterase-3 OS=Citrus sinensis PE=1 SV=1 136 8e-32 sp|P85076|PME_ACTDE Pectinesterase OS=Actinidia deliciosa PE=1 SV=1 135 2e-31 sp|Q43143|PMEU1_SOLLC Pectinesterase U1 OS=Solanum lycopersicum ... 135 2e-31 sp|O04886|PME1_CITSI Pectinesterase-1 OS=Citrus sinensis GN=PECS... 135 2e-31 sp|Q96575|PME22_SOLLC Pectinesterase-2 OS=Solanum lycopersicum G... 134 5e-31 sp|P83218|PME_DAUCA Pectinesterase OS=Daucus carota PE=1 SV=1 133 7e-31 sp|Q42534|PME2_ARATH Pectinesterase-2 OS=Arabidopsis thaliana GN... 133 7e-31 sp|P09607|PME21_SOLLC Pectinesterase-2 OS=Solanum lycopersicum G... 131 3e-30 sp|P14280|PME1_SOLLC Pectinesterase-1 OS=Solanum lycopersicum GN... 131 4e-30 sp|Q43062|PME_PRUPE Pectinesterase PPE8B OS=Prunus persica PE=2 ... 130 5e-30 sp|O04887|PME2_CITSI Pectinesterase-2 OS=Citrus sinensis GN=PECS... 127 5e-29 sp|Q96576|PME3_SOLLC Pectinesterase-3 OS=Solanum lycopersicum GN... 124 6e-28 sp|P83947|PME1_FICAW Pectinesterase OS=Ficus awkeotsang PE=1 SV=1 124 6e-28 sp|Q43111|PME3_PHAVU Pectinesterase-3 OS=Phaseolus vulgaris GN=M... 116 1e-25 sp|Q43043|PME_PETIN Pectinesterase OS=Petunia integrifolia GN=PP... 115 2e-25 sp|P41510|PME_BRANA Probable pectinesterase OS=Brassica napus GN... 114 6e-25 sp|O80722|PME4_ARATH Pectinesterase-4 OS=Arabidopsis thaliana GN... 114 6e-25 sp|Q42608|PME_BRACM Pectinesterase (Fragment) OS=Brassica campes... 112 1e-24 sp|Q5MFV8|PME5_ARATH Pectinesterase-5 OS=Arabidopsis thaliana GN... 110 5e-24 sp|Q5MFV6|PMEL_ARATH Probable pectinesterase VGDH2 OS=Arabidopsi... 110 8e-24 sp|Q42920|PME_MEDSA Pectinesterase OS=Medicago sativa PE=2 SV=1 105 2e-22 sp|Q12535|PME_ASPAC Pectinesterase OS=Aspergillus aculeatus GN=p... 91 4e-18 sp|P17872|PME_ASPTU Pectinesterase OS=Aspergillus tubingensis GN... 86 2e-16 sp|P58601|PME1_RALSO Pectinesterase OS=Ralstonia solanacearum GN... 66 1e-10 sp|P0C1A9|PMEA_DICD3 Pectinesterase A OS=Dickeya dadantii (strai... 65 2e-10 sp|P0C1A8|PMEA_ERWCH Pectinesterase A OS=Erwinia chrysanthemi GN... 65 4e-10 sp|P24791|PME2_RALSO Pectinesterase OS=Ralstonia solanacearum GN... 64 9e-10 sp|Q47474|PMEB_DICD3 Pectinesterase B OS=Dickeya dadantii (strai... 47 9e-05 sp|P55743|PMEB_PECCC Pectinesterase B (Fragment) OS=Pectobacteri... 39 0.018
>sp|Q43867|PME1_ARATH Pectinesterase-1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1 Length = 586
Score = 139 bits (351), Expect = 1e-32 Identities = 76/197 (38%), Positives = 110/197 (55%), Gaps = 12/197 (6%) Frame = +3
Query: 33 GAVGRQAVAFKIAGDKGALYNCNFLGAQDTLYDDHGRHYFENCYIQGSIDFIFGDGQSLY 212 GA QAVAF+ D Y C+F G QDTLY R ++ +C + G+IDFIFG ++ Sbjct: 380 GAAKHQAVAFRSGSDFSVYYQCSFDGFQDTLYPHSNRQFYRDCDVTGTIDFIFGSAAVVF 439
Query: 213 KGCQL---RTLSINPGSLTAQKRASPSSRTGFSFVDCRVDGSGVL----YLGRAWGAYSR 371 +GC++ + LS ++TAQ + P+ +G S C + +G + YLGR W +S Sbjct: 440 QGCKIMPRQPLSNQFNTITAQGKKDPNQSSGMSIQRCTISANGNVIAPTYLGRPWKEFST 499
Query: 372 VVFSYTYLGNVIIPKGWYNWGVSGRE--KTVYYGQYKCSGPGANQNGRVAWA---HELSD 536 V T +G V+ P GW +W VSG + ++ YG+YK +GPG++ RV WA +SD Sbjct: 500 TVIMETVIGAVVRPSGWMSW-VSGVDPPASIVYGEYKNTGPGSDVTQRVKWAGYKPVMSD 558
Query: 537 AEAAPFQSLNFIDGASW 587 AEAA F + GA W Sbjct: 559 AEAAKFTVATLLHGADW 575
>sp|P83948|PME3_CITSI Pectinesterase-3 OS=Citrus sinensis PE=1 SV=1 Length = 584
Score = 136 bits (343), Expect = 8e-32 Identities = 79/210 (37%), Positives = 108/210 (51%), Gaps = 15/210 (7%) Frame = +3
Query: 3 FENSAPAPPPGAVGRQAVAFKIAGDKGALYNCNFLGAQDTLYDDHGRHYFENCYIQGSID 182 F+N+A G QAVA ++ D A YNC+ L QDTLY R +F NC I G++D Sbjct: 368 FQNTA-----GPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVD 422
Query: 183 FIFGDGQSLYKGCQLRTLSINPGS---LTAQKRASPSSRTGFSFVDCR---------VDG 326 FIFG+ ++ + C + N G +TAQ RA P+ TG R V G Sbjct: 423 FIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQG 482
Query: 327 SGVLYLGRAWGAYSRVVFSYTYLGNVIIPKGWYNWGVSGREKTVYYGQYKCSGPGANQNG 506 S YLGR W YSR V + + +VI P GW+ W + T++YG+++ +G GA +G Sbjct: 483 SFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSG 542
Query: 507 RVAWAH---ELSDAEAAPFQSLNFIDGASW 587 RV W S EA F +FI G+SW Sbjct: 543 RVKWKGFRVITSATEAQAFTPGSFIAGSSW 572
>sp|P85076|PME_ACTDE Pectinesterase OS=Actinidia deliciosa PE=1 SV=1 Length = 321
Score = 135 bits (340), Expect = 2e-31 Identities = 78/210 (37%), Positives = 105/210 (50%), Gaps = 15/210 (7%) Frame = +3
Query: 3 FENSAPAPPPGAVGRQAVAFKIAGDKGALYNCNFLGAQDTLYDDHGRHYFENCYIQGSID 182 FEN A G QAVA + D A Y C+F+G QDTLY R ++ C + G+ID Sbjct: 104 FENYA-----GPSKHQAVALRSGADFSAFYQCSFVGYQDTLYVHSLRQFYSECDVYGTID 158
Query: 183 FIFGDGQSLYKGCQLRTLSINPGS---LTAQKRASPSSRTGFSFVDCRVDGSGVL----- 338 FIFG+ ++ + C L N TAQ R P+ TG S ++C+V + L Sbjct: 159 FIFGNAAAVLQKCNLYARKPNENQKNIFTAQGRDDPNQNTGISILNCKVAAAADLIPVLS 218
Query: 339 ----YLGRAWGAYSRVVFSYTYLGNVIIPKGWYNWGVSGREKTVYYGQYKCSGPGANQNG 506 YLGR W YSR VF + + ++I P GW W T+YY +YK +GPG+N Sbjct: 219 SFKTYLGRPWKEYSRTVFLLSQMESLIDPAGWLEWSGDFALTTLYYREYKNTGPGSNTTA 278
Query: 507 RVAW---AHELSDAEAAPFQSLNFIDGASW 587 RV W A ++ E F NFI G+ W Sbjct: 279 RVTWPGYAVTTNETEVIQFTVGNFIQGSQW 308
>sp|Q43143|PMEU1_SOLLC Pectinesterase U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1 Length = 583
Score = 135 bits (339), Expect = 2e-31 Identities = 78/212 (36%), Positives = 110/212 (51%), Gaps = 17/212 (8%) Frame = +3
Query: 3 FENSAPAPPPGAVGRQAVAFKIAGDKGALYNCNFLGAQDTLYDDHGRHYFENCYIQGSID 182 F+N+A GA QAVA + D A Y C+ L QDTLY R +F C + G++D Sbjct: 367 FQNTA-----GASKHQAVALCVGSDLSAFYRCDMLAYQDTLYVHSNRQFFVQCLVAGTVD 421
Query: 183 FIFGDGQSLYKGCQLRTLSINPGS-----LTAQKRASPSSRTGFSFVDCRVDGSGVL--- 338 FIFG+G ++++ C + + PGS +TAQ R P+ TG CR+ + L Sbjct: 422 FIFGNGAAVFQDCDIH--ARRPGSGQKNMVTAQGRTDPNQNTGIVIQKCRIGATSDLRPV 479
Query: 339 ------YLGRAWGAYSRVVFSYTYLGNVIIPKGWYNWGVSGREKTVYYGQYKCSGPGANQ 500 YLGR W YSR V + + +VI P GW+ W + T++YG+Y +G GA Sbjct: 480 QKSFPTYLGRPWKEYSRTVIMQSSITDVIQPAGWHEWNGNFALDTLFYGEYANTGAGAPT 539
Query: 501 NGRVAW-AHEL--SDAEAAPFQSLNFIDGASW 587 +GRV W H++ S EA + FI G SW Sbjct: 540 SGRVKWKGHKVITSSTEAQAYTPGRFIAGGSW 571
>sp|O04886|PME1_CITSI Pectinesterase-1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1 Length = 584
Score = 135 bits (339), Expect = 2e-31 Identities = 78/210 (37%), Positives = 107/210 (50%), Gaps = 15/210 (7%) Frame = +3
Query: 3 FENSAPAPPPGAVGRQAVAFKIAGDKGALYNCNFLGAQDTLYDDHGRHYFENCYIQGSID 182 F+N+A G QAVA ++ D A YNC+ L QDTLY R +F NC I G++D Sbjct: 368 FQNTA-----GPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVD 422
Query: 183 FIFGDGQSLYKGCQLRTLSINPGS---LTAQKRASPSSRTGFSFVDCR---------VDG 326 FIFG+ ++ + C + N G +TAQ R P+ TG R V G Sbjct: 423 FIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQG 482
Query: 327 SGVLYLGRAWGAYSRVVFSYTYLGNVIIPKGWYNWGVSGREKTVYYGQYKCSGPGANQNG 506 S YLGR W YSR V + + ++I P GW+ W + T++YG+++ SG GA +G Sbjct: 483 SFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSG 542
Query: 507 RVAWAH---ELSDAEAAPFQSLNFIDGASW 587 RV W S EA F +FI G+SW Sbjct: 543 RVKWKGFRVITSATEAQAFTPGSFIAGSSW 572
>sp|Q96575|PME22_SOLLC Pectinesterase-2 OS=Solanum lycopersicum GN=PME2 PE=3 SV=1 Length = 550
Score = 134 bits (336), Expect = 5e-31 Identities = 77/202 (38%), Positives = 104/202 (51%), Gaps = 17/202 (8%) Frame = +3
Query: 33 GAVGRQAVAFKIAGDKGALYNCNFLGAQDTLYDDHGRHYFENCYIQGSIDFIFGDGQSLY 212 G QAVA ++ DK + C QDTLY R ++ + Y+ G+IDFIFG+ ++ Sbjct: 337 GPAKHQAVALRVGADKSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTIDFIFGNAAVVF 396
Query: 213 KGCQLRTLSINPGS-----LTAQKRASPSSRTGFSFVDCRVDGSGVL---------YLGR 350 + C+L ++ PG +TAQ R P+ TG S C + S L YLGR Sbjct: 397 QKCKL--VARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGR 454
Query: 351 AWGAYSRVVFSYTYLGNVIIPKGWYNWGVSGREKTVYYGQYKCSGPGANQNGRVAWA--H 524 W YSR V +YLG +I P GW W KT+YYG++ +GPGA + RV W H Sbjct: 455 PWKKYSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYH 514
Query: 525 ELSD-AEAAPFQSLNFIDGASW 587 ++D AEA PF I G SW Sbjct: 515 CITDPAEAMPFTVAKLIQGGSW 536
>sp|P83218|PME_DAUCA Pectinesterase OS=Daucus carota PE=1 SV=1 Length = 319
Score = 133 bits (335), Expect = 7e-31 Identities = 79/212 (37%), Positives = 107/212 (50%), Gaps = 17/212 (8%) Frame = +3
Query: 3 FENSAPAPPPGAVGRQAVAFKIAGDKGALYNCNFLGAQDTLYDDHGRHYFENCYIQGSID 182 F+N+A GA QAVA ++ D A Y C+ L QD+LY R +F NC+I G++D Sbjct: 103 FQNTA-----GAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVD 157
Query: 183 FIFGDGQSLYKGCQLRTLSINPGS-----LTAQKRASPSSRTGFSFVDCRVDGSGVL--- 338 FIFG+ + + C + PGS +TAQ R P+ TG R+ + L Sbjct: 158 FIFGNAAVVLQDCDIHAR--RPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPV 215
Query: 339 ------YLGRAWGAYSRVVFSYTYLGNVIIPKGWYNWGVSGREKTVYYGQYKCSGPGANQ 500 YLGR W YSR V + + NVI P GW+ W + T+YYG+Y+ +G GA Sbjct: 216 QSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAAT 275
Query: 501 NGRVAWAH---ELSDAEAAPFQSLNFIDGASW 587 +GRV W S EA F +FI G SW Sbjct: 276 SGRVTWKGFKVITSSTEAQGFTPGSFIAGGSW 307
>sp|Q42534|PME2_ARATH Pectinesterase-2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2 Length = 587
Score = 133 bits (335), Expect = 7e-31 Identities = 76/210 (36%), Positives = 104/210 (49%), Gaps = 15/210 (7%) Frame = +3
Query: 3 FENSAPAPPPGAVGRQAVAFKIAGDKGALYNCNFLGAQDTLYDDHGRHYFENCYIQGSID 182 F+N+A G QAVA ++ D A Y C+ QDTLY R +F C+I G++D Sbjct: 371 FQNTA-----GPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVD 425
Query: 183 FIFGDGQSLYKGCQLRTLSINPGS---LTAQKRASPSSRTGFSFVDCRVDGSGVL----- 338 FIFG+ ++ + C + N G +TAQ R+ P+ TG +CR+ G+ L Sbjct: 426 FIFGNAAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTSDLLAVKG 485
Query: 339 ----YLGRAWGAYSRVVFSYTYLGNVIIPKGWYNWGVSGREKTVYYGQYKCSGPGANQNG 506 YLGR W YSR V + + +VI P+GW+ W S T+ Y +Y G GA Sbjct: 486 TFPTYLGRPWKEYSRTVIMQSDISDVIRPEGWHEWSGSFALDTLTYREYLNRGGGAGTAN 545
Query: 507 RVAWAHE---LSDAEAAPFQSLNFIDGASW 587 RV W SD EA PF + FI G W Sbjct: 546 RVKWKGYKVITSDTEAQPFTAGQFIGGGGW 575
>sp|P09607|PME21_SOLLC Pectinesterase-2 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2 Length = 550
Score = 131 bits (330), Expect = 3e-30 Identities = 77/202 (38%), Positives = 103/202 (50%), Gaps = 17/202 (8%) Frame = +3
Query: 33 GAVGRQAVAFKIAGDKGALYNCNFLGAQDTLYDDHGRHYFENCYIQGSIDFIFGDGQSLY 212 G QAVA ++ DK + C QDTLY R ++ + Y+ G+IDFIFG+ ++ Sbjct: 337 GPAKHQAVALRVGADKSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTIDFIFGNAAVVF 396
Query: 213 KGCQLRTLSINPGS-----LTAQKRASPSSRTGFSFVDCRVDGSGVL---------YLGR 350 + CQL ++ PG +TAQ R P+ TG S C + S L YLGR Sbjct: 397 QKCQL--VARKPGKYQQNMVTAQGRTDPNQATGTSIQFCDIIASPDLKPVVKEFPTYLGR 454
Query: 351 AWGAYSRVVFSYTYLGNVIIPKGWYNWGVSGREKTVYYGQYKCSGPGANQNGRVAWA--H 524 W YSR V +YLG +I P GW W KT+YYG++ +GPGA + RV W H Sbjct: 455 PWKKYSRTVVMESYLGGLIDPSGWAEWHGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYH 514
Query: 525 ELSD-AEAAPFQSLNFIDGASW 587 ++D AEA F I G SW Sbjct: 515 VITDPAEAMSFTVAKLIQGGSW 536
>sp|P14280|PME1_SOLLC Pectinesterase-1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5 Length = 546
Score = 131 bits (329), Expect = 4e-30 Identities = 75/202 (37%), Positives = 103/202 (50%), Gaps = 17/202 (8%) Frame = +3
Query: 33 GAVGRQAVAFKIAGDKGALYNCNFLGAQDTLYDDHGRHYFENCYIQGSIDFIFGDGQSLY 212 G QAVA ++ D + C QDTLY R ++ + Y+ G++DFIFG+ ++ Sbjct: 333 GPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVF 392
Query: 213 KGCQLRTLSINPGS-----LTAQKRASPSSRTGFSFVDCRVDGSGVL---------YLGR 350 + CQL ++ PG +TAQ R P+ TG S C + S L YLGR Sbjct: 393 QKCQL--VARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGR 450
Query: 351 AWGAYSRVVFSYTYLGNVIIPKGWYNWGVSGREKTVYYGQYKCSGPGANQNGRVAWA--H 524 W YSR V +YLG +I P GW W KT+YYG++ +GPGA + RV W H Sbjct: 451 PWKEYSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYH 510
Query: 525 ELSD-AEAAPFQSLNFIDGASW 587 ++D A+A PF I G SW Sbjct: 511 VITDPAKAMPFTVAKLIQGGSW 532
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q53WM8 |
Definition |
tr|Q53WM8|Q53WM8_ORYSJ Pectinesterase OS=Oryza sativa subsp. japonica |
Align length |
195 |
Score (bit) |
280.0 |
E-value |
4.0e-74 |
Report |
|