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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950666
Clone id TST38A01NGRL0009_E18
Library
Length 687
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_E18. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
CTCCATTTCAGTGGCGCTCCCTTCTGGAATGGTCTTCTGCAAATCGGCCACCCGATTTGG
ATCAAAAGCTTTTCATACGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTCTGCTCGG
CTTGATGCACTACTAGCTGCCTGCCTAAGGTGATCTCCATCTTTCCCTTGATCTGTGGCA
GAGGTACGATTGTCATCCTCAAGAGAGATGCATAGAAGTCTGGCTCAAAAGTTGTGTAAT
AAGGGATCTTGAAAATGGAAGGCAGCAAGAAGGCTACAAGTAGCTCTGCAGGAGTGGTCA
TTACTGAAGGTGCTGATAGCTTTTGAATTTTTGTTACCCACCCCGCTGTGATGCTACAGA
TGGCTTTCCTAAGCGAGTGTCCGAATGGTCATGCCCATGTGAACGATGGGCGTTTGTCTT
TTGAACAGCTTTCTGGATCTGTGATGCTGTACGGTGCCTCCTGTAGTGCGTTTCTCACTT
GATGTTGCACTGAAATGCTGGAGGATGTGATGCCCGTGGCAGCTCGCACGTGCACGAAGC
CCGTAGTAGCTTCTACCAGCAGCAGCCTAGAGCCGGTTGTGAGCAAAGGGTCCAATGATA
TTTCGAGCTGTAACAGCTGTGCACGAGATGGAAACACAGATTTTCCTGCTCTTTGTGATG
GCCCTTTCAACATTTTGGTAACTGTCT
■■Homology search results ■■ -
sp_hit_id Q626H5
Definition sp|Q626H5|PLX2_CAEBR Plexin-2 OS=Caenorhabditis briggsae
Align length 53
Score (bit) 34.7
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950666|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_E18, 5'
         (687 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q626H5|PLX2_CAEBR Plexin-2 OS=Caenorhabditis briggsae GN=plx-...    35   0.49 
sp|O45657|PLX2_CAEEL Plexin-2 OS=Caenorhabditis elegans GN=plx-2...    34   0.64 
sp|Q3B3Y0|PURL_PELLD Phosphoribosylformylglycinamidine synthase ...    33   1.4  
sp|Q7NHC5|TRPA_GLOVI Tryptophan synthase alpha chain OS=Gloeobac...    32   4.1  
sp|Q02294|CAC1B_RAT Voltage-dependent N-type calcium channel sub...    32   4.2  
sp|Q3ARU4|PURL_CHLCH Phosphoribosylformylglycinamidine synthase ...    31   5.4  
sp|Q9HSB9|TRPA_HALSA Tryptophan synthase alpha chain OS=Halobact...    31   7.1  
sp|Q8KD17|PURL_CHLTE Phosphoribosylformylglycinamidine synthase ...    30   9.2  
sp|Q0CJY1|MON1_ASPTN Vacuolar fusion protein mon1 OS=Aspergillus...    30   9.3  
sp|O55017|CAC1B_MOUSE Voltage-dependent N-type calcium channel s...    30   9.3  

>sp|Q626H5|PLX2_CAEBR Plexin-2 OS=Caenorhabditis briggsae GN=plx-2
           PE=3 SV=1
          Length = 1773

 Score = 34.7 bits (78), Expect = 0.49
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -3

Query: 553 EATTGFVHVRAATGITSSSISVQHQVR-NALQEAPYSITDPESCSKDKRPSFT 398
           + T     +   T + SS++S+Q++V    +Q++P+   D +SC KD RP  T
Sbjct: 47  QQTIYIASINRITSLHSSNLSIQNEVSIGPVQDSPWCSADGKSCLKDNRPFST 99


>sp|O45657|PLX2_CAEEL Plexin-2 OS=Caenorhabditis elegans GN=plx-2
           PE=1 SV=4
          Length = 1766

 Score = 34.3 bits (77), Expect = 0.64
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = -3

Query: 517 TGITSSSISVQHQVR-NALQEAPYSITDPESCSKDKRP 407
           T ++ S+ S+QH+V    +Q++P+   D +SC KD RP
Sbjct: 60  TSLSISNFSIQHEVSLGPVQDSPWCSADGKSCLKDNRP 97


>sp|Q3B3Y0|PURL_PELLD Phosphoribosylformylglycinamidine synthase 2
           OS=Pelodictyon luteolum (strain DSM 273) GN=purL PE=3
           SV=1
          Length = 761

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -3

Query: 475 RNALQEAPYSITDPESCSKDKRPSFTWA*PFGHS--LRKAICSITAGWVTKIQKLSAPSV 302
           R+ +  A ++  D    S+DKRPS     PF     L   + +I  G+V  +Q + A  +
Sbjct: 216 RDGIHGATFASEDLSEASEDKRPSVQVGDPFAEKLLLEATLEAIATGYVAGLQDMGAAGI 275

Query: 301 MTTPAEL 281
            ++ +E+
Sbjct: 276 TSSTSEM 282


>sp|Q7NHC5|TRPA_GLOVI Tryptophan synthase alpha chain OS=Gloeobacter
           violaceus GN=trpA PE=3 SV=1
          Length = 276

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 559 LVEATTGFVHVRAATGITSSSISVQHQVRNALQEAPYSITDP 434
           + E TTGFV++ + TG+T +   V   VR +L +     T P
Sbjct: 171 IAERTTGFVYLVSTTGVTGARTQVASSVRTSLAQLRALTTRP 212


>sp|Q02294|CAC1B_RAT Voltage-dependent N-type calcium channel subunit
            alpha-1B OS=Rattus norvegicus GN=Cacna1b PE=1 SV=1
          Length = 2336

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = -1

Query: 519  PRASHP---PAFQCNIK*ETHYRRHRTASQIQKAVQKTNAHRSHGHDHSDTRLGKPSVA 352
            PR SH    P     ++ E   R HR  S  +   ++   HR+H H    ++ GK   A
Sbjct: 893  PRRSHSKEAPGADTQVRCERSRRHHRRGSPEEATEREPRRHRAHRHAQDSSKEGKEGTA 951


>sp|Q3ARU4|PURL_CHLCH Phosphoribosylformylglycinamidine synthase 2
           OS=Chlorobium chlorochromatii (strain CaD3) GN=purL PE=3
           SV=1
          Length = 761

 Score = 31.2 bits (69), Expect = 5.4
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -3

Query: 475 RNALQEAPYSITDPESCSKDKRPSFTWA*PFGHS--LRKAICSITAGWVTKIQKLSAPSV 302
           R+ +  A ++  D    S++KRPS     PF     L   + +I  G+V  +Q + A  +
Sbjct: 216 RDGIHGATFASEDLSEASEEKRPSVQVGDPFAEKLLLEATLEAIETGYVVGLQDMGAAGI 275

Query: 301 MTTPAEL 281
            ++ +E+
Sbjct: 276 TSSTSEM 282


>sp|Q9HSB9|TRPA_HALSA Tryptophan synthase alpha chain
           OS=Halobacterium salinarium GN=trpA PE=3 SV=2
          Length = 276

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = -3

Query: 661 PSQRAGKSVFPSRAQLLQLEISLDPLLTTGSRLLLVEATTGFVHVRAATGITSSSISVQH 482
           P   +G      RA  L L   + P  T   R  +++ TTGFV+V+   G T +   V  
Sbjct: 130 PVDESGPLREACRAHGLDLVFVVAPTTTADRRERMLDLTTGFVYVQGRVGTTGAREEVSA 189

Query: 481 QVRNAL 464
              +AL
Sbjct: 190 ATPDAL 195


>sp|Q8KD17|PURL_CHLTE Phosphoribosylformylglycinamidine synthase II
           OS=Chlorobium tepidum GN=purL PE=3 SV=1
          Length = 759

 Score = 30.4 bits (67), Expect = 9.2
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -3

Query: 475 RNALQEAPYSITDPESCSKDKRPSFTWA*PFGHS--LRKAICSITAGWVTKIQKLSAPSV 302
           R+ +  A ++  D    S+DKRPS     PF     L   + +I  G V  +Q + A  +
Sbjct: 215 RDGIHGATFASEDLSEASEDKRPSVQVGDPFAEKLLLEATLEAIATGAVVGLQDMGAAGL 274

Query: 301 MTTPAEL 281
            ++ +E+
Sbjct: 275 TSSTSEM 281


>sp|Q0CJY1|MON1_ASPTN Vacuolar fusion protein mon1 OS=Aspergillus
           terreus (strain NIH 2624) GN=mon1 PE=3 SV=1
          Length = 556

 Score = 30.4 bits (67), Expect = 9.3
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
 Frame = +1

Query: 586 KGPMIFRAVTAVHEMETQIFL----LFVMALST 672
           KGP+ F A++ +HE ETQ+ L    L++  LST
Sbjct: 271 KGPLYFVAISRIHESETQLKLQLEALYMQILST 303


>sp|O55017|CAC1B_MOUSE Voltage-dependent N-type calcium channel
            subunit alpha-1B OS=Mus musculus GN=Cacna1b PE=1 SV=1
          Length = 2327

 Score = 30.4 bits (67), Expect = 9.3
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
 Frame = -1

Query: 519  PRASHP---PAFQCNIK*ETHYRRHRTASQIQKAVQKTNAHRSHGHDHSDTRLGKPSVAS 349
            PR SH    P     ++ E   R HR  S  +   ++   HR+H H    ++ G   V  
Sbjct: 887  PRRSHSKETPGADTQVRCERSRRHHRRGSPEEATEREPRRHRAHRHAQDSSKEGTAPVLV 946

Query: 348  QRG 340
             +G
Sbjct: 947  PKG 949
tr_hit_id Q1ERH4
Definition tr|Q1ERH4|Q1ERH4_PINTH Tryptophan synthase alpha subunit (Fragment) OS=Pinus thunbergii
Align length 63
Score (bit) 40.4
E-value 0.11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950666|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_E18, 5'
         (687 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1ERH4|Q1ERH4_PINTH Tryptophan synthase alpha subunit (Fragme...    40   0.11 
tr|Q1ERH5|Q1ERH5_GINBI Tryptophan synthase alpha subunit (Fragme...    37   0.91 
tr|Q1ERH3|Q1ERH3_9MAGN Tryptophan synthase alpha subunit (Fragme...    37   0.91 
tr|A9RJP2|A9RJP2_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.91 
tr|Q818Q0|Q818Q0_BACCR Putative uncharacterized protein OS=Bacil...    37   1.2  
tr|B7HB67|B7HB67_BACCE Group-specific protein OS=Bacillus cereus...    37   1.2  
tr|B5USZ4|B5USZ4_BACCE Putative uncharacterized protein OS=Bacil...    37   1.2  
tr|B6SCD0|B6SCD0_9MAGN Indole-3-glycerol phosphate lyase IGL1vs2...    36   2.0  
tr|B6SCC9|B6SCC9_9MAGN Indole-3-glycerol phosphate lyase IGL1vs1...    36   2.0  
tr|A9PGZ5|A9PGZ5_POPTR Putative uncharacterized protein OS=Popul...    36   2.0  
tr|B7IXI7|B7IXI7_BACCE Group-specific protein OS=Bacillus cereus...    36   2.6  
tr|Q7XXP5|Q7XXP5_ORYSJ Os05g0270200 protein OS=Oryza sativa subs...    35   3.4  
tr|A2Y2L0|A2Y2L0_ORYSI Putative uncharacterized protein OS=Oryza...    35   3.4  
tr|Q1ERH1|Q1ERH1_TULGE Tryptophan synthase alpha subunit (Fragme...    34   7.7  
tr|B8C4D4|B8C4D4_THAPS Predicted protein OS=Thalassiosira pseudo...    34   7.7  

>tr|Q1ERH4|Q1ERH4_PINTH Tryptophan synthase alpha subunit (Fragment)
           OS=Pinus thunbergii GN=PtTSA PE=2 SV=1
          Length = 172

 Score = 40.4 bits (93), Expect = 0.11
 Identities = 20/63 (31%), Positives = 35/63 (55%)
 Frame = -3

Query: 622 AQLLQLEISLDPLLTTGSRLLLVEATTGFVHVRAATGITSSSISVQHQVRNALQEAPYSI 443
           A  ++L +   P   T    L+VEA+ GF+++ + TG+T +  S++ +V   LQE   + 
Sbjct: 85  ANKIELVLLTTPTTPTERMKLIVEASEGFIYLASITGVTGARASIESRVELLLQEIKKAT 144

Query: 442 TDP 434
           T P
Sbjct: 145 TKP 147


>tr|Q1ERH5|Q1ERH5_GINBI Tryptophan synthase alpha subunit (Fragment)
           OS=Ginkgo biloba GN=GbTSA PE=2 SV=1
          Length = 172

 Score = 37.4 bits (85), Expect = 0.91
 Identities = 18/63 (28%), Positives = 35/63 (55%)
 Frame = -3

Query: 622 AQLLQLEISLDPLLTTGSRLLLVEATTGFVHVRAATGITSSSISVQHQVRNALQEAPYSI 443
           A  ++L +   P   T    ++VEA+ GF+++ + TG+T +  SV+ +V + L +   + 
Sbjct: 85  ANKIELVLLTTPTTPTERMKMIVEASEGFIYLVSITGVTGARASVESRVESLLYDIKKAT 144

Query: 442 TDP 434
           T P
Sbjct: 145 TKP 147


>tr|Q1ERH3|Q1ERH3_9MAGN Tryptophan synthase alpha subunit (Fragment)
           OS=Magnolia praecocissima GN=MpTSA PE=2 SV=1
          Length = 172

 Score = 37.4 bits (85), Expect = 0.91
 Identities = 19/60 (31%), Positives = 34/60 (56%)
 Frame = -3

Query: 613 LQLEISLDPLLTTGSRLLLVEATTGFVHVRAATGITSSSISVQHQVRNALQEAPYSITDP 434
           ++L +   P   T     +VEA+ GFV++ ++TG+T +  SV  +V++ LQE   +   P
Sbjct: 88  IELVLLTTPTTPTHRMKAIVEASEGFVYLVSSTGVTGARASVSGKVQSLLQEIKEATAKP 147


>tr|A9RJP2|A9RJP2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_115585 PE=3 SV=1
          Length = 268

 Score = 37.4 bits (85), Expect = 0.91
 Identities = 22/75 (29%), Positives = 37/75 (49%)
 Frame = -3

Query: 661 PSQRAGKSVFPSRAQLLQLEISLDPLLTTGSRLLLVEATTGFVHVRAATGITSSSISVQH 482
           P +   K    S A  L+L +   P        ++ +A+ GFV++ + TG+T +  SVQ 
Sbjct: 133 PLEETDKLRERSVANGLELILLTTPTTPKSRMKIIAKASQGFVYLVSLTGVTGARTSVQS 192

Query: 481 QVRNALQEAPYSITD 437
           +V   L+E    +TD
Sbjct: 193 RVETLLKELKEQVTD 207


>tr|Q818Q0|Q818Q0_BACCR Putative uncharacterized protein OS=Bacillus
           cereus (strain ATCC 14579 / DSM 31) GN=BC_4196 PE=4 SV=1
          Length = 106

 Score = 37.0 bits (84), Expect = 1.2
 Identities = 14/48 (29%), Positives = 30/48 (62%)
 Frame = -3

Query: 379 HSLRKAICSITAGWVTKIQKLSAPSVMTTPAELLVAFLLPSIFKIPYY 236
           H++ K +  +  G +   Q +  PS+M T + +LV+F++ +I+ +PY+
Sbjct: 58  HAISKTLTGVETGEIKPFQIVLTPSIMGTLSLVLVSFIITAIYYLPYF 105


>tr|B7HB67|B7HB67_BACCE Group-specific protein OS=Bacillus cereus
           B4264 GN=BCB4264_A4306 PE=4 SV=1
          Length = 106

 Score = 37.0 bits (84), Expect = 1.2
 Identities = 14/48 (29%), Positives = 30/48 (62%)
 Frame = -3

Query: 379 HSLRKAICSITAGWVTKIQKLSAPSVMTTPAELLVAFLLPSIFKIPYY 236
           H++ K +  +  G +   Q +  PS+M T + +LV+F++ +I+ +PY+
Sbjct: 58  HAISKTLTGVETGEIKPFQIVLTPSIMGTLSLVLVSFIITAIYYLPYF 105


>tr|B5USZ4|B5USZ4_BACCE Putative uncharacterized protein OS=Bacillus
           cereus AH1134 GN=BCAH1134_4285 PE=4 SV=1
          Length = 106

 Score = 37.0 bits (84), Expect = 1.2
 Identities = 14/48 (29%), Positives = 30/48 (62%)
 Frame = -3

Query: 379 HSLRKAICSITAGWVTKIQKLSAPSVMTTPAELLVAFLLPSIFKIPYY 236
           H++ K +  +  G +   Q +  PS+M T + +LV+F++ +I+ +PY+
Sbjct: 58  HAISKTLTGVETGEIKPFQIVLTPSIMGTLSLVLVSFIITAIYYLPYF 105


>tr|B6SCD0|B6SCD0_9MAGN Indole-3-glycerol phosphate lyase IGL1vs2
           OS=Consolida orientalis PE=2 SV=1
          Length = 319

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 19/60 (31%), Positives = 33/60 (55%)
 Frame = -3

Query: 613 LQLEISLDPLLTTGSRLLLVEATTGFVHVRAATGITSSSISVQHQVRNALQEAPYSITDP 434
           ++L +   P   T     +VEA+ GFV++ ++ G+T S  SV  +V++ LQE   +   P
Sbjct: 201 IELILLTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGSRASVSSRVQSLLQEIKEASNKP 260


>tr|B6SCC9|B6SCC9_9MAGN Indole-3-glycerol phosphate lyase IGL1vs1
           OS=Consolida orientalis PE=2 SV=1
          Length = 319

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 19/60 (31%), Positives = 33/60 (55%)
 Frame = -3

Query: 613 LQLEISLDPLLTTGSRLLLVEATTGFVHVRAATGITSSSISVQHQVRNALQEAPYSITDP 434
           ++L +   P   T     +VEA+ GFV++ ++ G+T S  SV  +V++ LQE   +   P
Sbjct: 201 IELILLTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGSRASVSSRVQSLLQEIKETSNKP 260


>tr|A9PGZ5|A9PGZ5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 151

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = -3

Query: 613 LQLEISLDPLLTTGSRLLLVEATTGFVHVRAATGITSSSISVQHQVRNALQEAPYSITDP 434
           L+L +   P   T     +VEA  GFV++ ++ G+T +  SV  +V+  L++   S T P
Sbjct: 64  LELVLLTTPTTPTERMKAIVEAADGFVYLVSSVGVTGARASVSDRVQTLLRDIKESTTKP 123