BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950667|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_E19, 5'
         (421 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5L6Z3|RUVA_CHLAB Holliday junction ATP-dependent DNA helicas...    29   8.6  
sp|P24038|NIRT_PSEST Denitrification system component nirT OS=Ps...    29   8.6  

>sp|Q5L6Z3|RUVA_CHLAB Holliday junction ATP-dependent DNA helicase
           ruvA OS=Chlamydophila abortus GN=ruvA PE=3 SV=2
          Length = 207

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 25/90 (27%), Positives = 38/90 (42%)
 Frame = -2

Query: 324 RKKNKSVWPFDCQFLLNLNIQLKYSCM*LAMQGKIPIGFQKSSQDRLKHSFILRLATKS* 145
           ++K   + P D Q L +     K SCM   +Q    +G+ KSS +R+             
Sbjct: 130 KQKLADLLPLDAQILASWE-PAKPSCMEEGIQALAALGYPKSSAERM------------- 175

Query: 144 NSKHFTLLPHHCISIEALHEDLDKEIQRLN 55
            ++  + LP H    E L   L K +Q LN
Sbjct: 176 IAEAMSELPDHASVAEILPIALKKNLQGLN 205


>sp|P24038|NIRT_PSEST Denitrification system component nirT
           OS=Pseudomonas stutzeri GN=nirT PE=2 SV=1
          Length = 201

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 114 HCISIEALHEDLDKEIQRLNHETLSEIEIMCRRSHLG 4
           +C S+E++  D+ K+  R  HE   E  + C   H G
Sbjct: 150 NCHSLESMSSDMQKQRARKQHEMAREDNLTCIACHKG 186

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950667|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_E19, 5'
         (421 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8DG21|Q8DG21_VIBVU TRAP-type C4-dicarboxylate transport syst...    33   9.2  
tr|Q7MMH3|Q7MMH3_VIBVY TRAP-type C4-dicarboxylate transport syst...    33   9.2  

>tr|Q8DG21|Q8DG21_VIBVU TRAP-type C4-dicarboxylate transport system,
           large permease component OS=Vibrio vulnificus
           GN=VV1_0028 PE=4 SV=1
          Length = 453

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 416 KTLLSGHERHKVLTSTPFFFFLGKTLRAGGQGKKISQFGHLIVNFF 279
           +TL +  E H  L + PFF      +  GG  K+I +F   +V +F
Sbjct: 45  QTLFNAFEGHYTLLAIPFFILASSFMSTGGVAKRIIRFAIAMVGWF 90


>tr|Q7MMH3|Q7MMH3_VIBVY TRAP-type C4-dicarboxylate transport system,
           large permease component OS=Vibrio vulnificus (strain
           YJ016) GN=VV1098 PE=4 SV=1
          Length = 453

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 416 KTLLSGHERHKVLTSTPFFFFLGKTLRAGGQGKKISQFGHLIVNFF 279
           +TL +  E H  L + PFF      +  GG  K+I +F   +V +F
Sbjct: 45  QTLFNAFEGHYTLLAIPFFILASSFMSTGGVAKRIIRFAIAMVGWF 90