NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950687
Clone id TST38A01NGRL0009_F15
Library
Length 527
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_F15. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
ATAGGGTTGAAAAGGAATACGTGGATTTGGAATTCTCTTGTGCGAAATCATTCTGGAGAT
ATGGATGACGGCGTCGGATTGCCAGCATTGGCTGCTGTGAATGCTGCATCTTCTGAGGCC
CCTGAACTCCCATAATTAAGTCAAGTAATGTTATGAATCCTATCCGAAAGTAGGCTGCGT
GCCAAGAACATTGTCCGAGCTTTCCAAGCACAACAATTGAGGCTTACCGAATTATATGGG
ACTACAATACGAATTGTGGACGAAATGCACCGAACAAAGCATCCATCATCCACGAATGGT
GAGAATGCAAAAACTCTTCAGTCAAGCACAGCTCACAACACTGGCGAGTCGCCGACTTTT
CTTGAGGTTATGGCGCTCCTCAAACGGGTTGAGACTCCTCCGAGAATCAAAAACAGCGGT
GATTAGCATCCGGTTCCTCATCAACGTCCTTCTTTGTCTTGTTTGCCACCTTAGCCCAAG
CCTATGGGAGAAGACGCAGAGGACCGCTTGTGATTATTTGCCAGTCA
■■Homology search results ■■ -
sp_hit_id Q03463
Definition sp|Q03463|POLG_HCVJ1 Genome polyprotein OS=Hepatitis C virus genotype 1b (isolate HC-J1)
Align length 51
Score (bit) 30.8
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950687|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_F15, 5'
         (527 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03463|POLG_HCVJ1 Genome polyprotein OS=Hepatitis C virus gen...    31   4.1  
sp|Q01040|UL32_SHV21 Probable major envelope glycoprotein 68 OS=...    30   9.2  

>sp|Q03463|POLG_HCVJ1 Genome polyprotein OS=Hepatitis C virus genotype
            1b (isolate HC-J1) PE=1 SV=1
          Length = 3011

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 203  KARTMFLARSLLSDRIHNIT*LNYGSSGASEDAAFTAANAGNPTPSSISPE 51
            K RT+ L  S LS  +  +   ++GSS  S         +  P PS  SP+
Sbjct: 2329 KKRTVVLTESTLSTALAELAAKSFGSSSTSGITGDNTTTSSEPAPSGCSPD 2379


>sp|Q01040|UL32_SHV21 Probable major envelope glycoprotein 68
           OS=Saimiriine herpesvirus 2 (strain 11) GN=68 PE=3 SV=1
          Length = 436

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 449 LLCLVCHLSPSLWEKTQRTACDYLPV 526
           LLCL C  +P  W  T  TA D++ +
Sbjct: 77  LLCLTCLYAPITWTSTLMTAADFIEI 102
tr_hit_id B4JWZ0
Definition tr|B4JWZ0|B4JWZ0_DROGR GH17850 OS=Drosophila grimshawi
Align length 43
Score (bit) 35.4
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950687|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_F15, 5'
         (527 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4JWZ0|B4JWZ0_DROGR GH17850 OS=Drosophila grimshawi GN=GH1785...    35   1.8  
tr|B2Y2P1|B2Y2P1_9HEPC Polyprotein (Fragment) OS=Hepatitis C vir...    35   3.0  
tr|B2Y2M5|B2Y2M5_9HEPC Polyprotein (Fragment) OS=Hepatitis C vir...    35   3.0  
tr|A7XB19|A7XB19_9HEPC Genome polyprotein OS=Hepatitis C virus P...    35   3.0  
tr|B0WE34|B0WE34_CULQU Dipeptidyl peptidase 4 OS=Culex quinquefa...    35   3.0  
tr|B1PBL6|B1PBL6_9HEPC Polyprotein (Fragment) OS=Hepatitis C vir...    34   4.0  
tr|Q68631|Q68631_9HEPC Non-structural 5a protein (Fragment) OS=H...    33   6.7  
tr|Q68630|Q68630_9HEPC Non-structural 5a protein (Fragment) OS=H...    33   8.8  
tr|B3TKR1|B3TKR1_9HEPC Polyprotein OS=Hepatitis C virus subtype ...    33   8.8  

>tr|B4JWZ0|B4JWZ0_DROGR GH17850 OS=Drosophila grimshawi GN=GH17850
           PE=4 SV=1
          Length = 1069

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +1

Query: 223 LTELYGTTIRIVDEMHRTKHPSSTNGENAKTLQSSTAHNTGES 351
           L ELYGTT +  + ++  KHP+++ G+ A T   +TA  +  +
Sbjct: 462 LNELYGTTWQTPENIYLLKHPNASKGKTAATTTKTTASTSSST 504


>tr|B2Y2P1|B2Y2P1_9HEPC Polyprotein (Fragment) OS=Hepatitis C virus
            GN=pol PE=4 SV=1
          Length = 2956

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = -1

Query: 203  KARTMFLARSLLSDRIHNIT*LNYGSSGASEDAAFTAANAGNPTPSSISPE 51
            K RT+ L  S LS  +  +   ++GSS  S  AA  A  +  P PSS +P+
Sbjct: 2329 KKRTVVLTESKLSIALAELATKSFGSSSTSGIAADNATTSSEPAPSSCAPD 2379


>tr|B2Y2M5|B2Y2M5_9HEPC Polyprotein (Fragment) OS=Hepatitis C virus
            GN=pol PE=4 SV=1
          Length = 3000

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = -1

Query: 203  KARTMFLARSLLSDRIHNIT*LNYGSSGASEDAAFTAANAGNPTPSSISPE 51
            K RT+ L  S LS  +  +   ++GSS  S  AA  A  +  P PSS +P+
Sbjct: 2329 KKRTVVLTESKLSIALAELATKSFGSSSTSGIAADNATTSSEPAPSSCAPD 2379


>tr|A7XB19|A7XB19_9HEPC Genome polyprotein OS=Hepatitis C virus PE=4
            SV=1
          Length = 3011

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = -1

Query: 203  KARTMFLARSLLSDRIHNIT*LNYGSSGASEDAAFTAANAGNPTPSSISPE 51
            K RT+ L  S LS  +  +   ++GSS  S  AA  A  +  P PSS +P+
Sbjct: 2329 KKRTVVLTESKLSIALAELATKSFGSSSTSGIAADNATTSSEPAPSSCAPD 2379


>tr|B0WE34|B0WE34_CULQU Dipeptidyl peptidase 4 OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ005491 PE=4 SV=1
          Length = 745

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 21/54 (38%), Positives = 29/54 (53%)
 Frame = -1

Query: 185 LARSLLSDRIHNIT*LNYGSSGASEDAAFTAANAGNPTPSSISPE*FRTREFQI 24
           L  +LL D++ N T  NY S   S D ++ AA    PTPS    + FRT + Q+
Sbjct: 413 LTCNLLKDKLSNETPCNYASVAFSPDFSYFAAICSGPTPS--YSQIFRTADLQL 464


>tr|B1PBL6|B1PBL6_9HEPC Polyprotein (Fragment) OS=Hepatitis C virus
           PE=4 SV=1
          Length = 1043

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -1

Query: 203 KARTMFLARSLLSDRIHNIT*LNYGSSGASEDAAFTAANAGNPTPSSISPE 51
           K RT+ L  S LS  +  +   ++GSS  S   A +A  +  P PS  SP+
Sbjct: 384 KKRTVVLTESTLSTALAELATKSFGSSSTSGVVADSATTSSEPVPSGCSPD 434


>tr|Q68631|Q68631_9HEPC Non-structural 5a protein (Fragment)
           OS=Hepatitis C virus GN=NS5a PE=4 SV=1
          Length = 116

 Score = 33.5 bits (75), Expect = 6.7
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -1

Query: 203 KARTMFLARSLLSDRIHNIT*LNYGSSGASEDAAFTAANAGNPTPSSISPE 51
           K RTM L  S LS  +  +   ++GSS  S  AA  A  +  P PS   P+
Sbjct: 37  KKRTMVLTESNLSTALAELATKSFGSSSTSGIAADNATTSSEPAPSGRPPD 87


>tr|Q68630|Q68630_9HEPC Non-structural 5a protein (Fragment)
           OS=Hepatitis C virus GN=NS5a PE=4 SV=1
          Length = 116

 Score = 33.1 bits (74), Expect = 8.8
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -1

Query: 203 KARTMFLARSLLSDRIHNIT*LNYGSSGASEDAAFTAANAGNPTPSSISPE 51
           K RTM L  S LS  +  +   ++GSS  S  AA +   +  P PS   P+
Sbjct: 37  KKRTMVLTESNLSTALAELATKSFGSSSTSGIAADSTTTSSEPAPSGCPPD 87


>tr|B3TKR1|B3TKR1_9HEPC Polyprotein OS=Hepatitis C virus subtype 1a
            PE=4 SV=1
          Length = 3011

 Score = 33.1 bits (74), Expect = 8.8
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 203  KARTMFLARSLLSDRIHNIT*LNYGSSGASEDAAFTAANAGNPTPSSISPE 51
            K RT+ L  S +S  +  +   ++GSS  S      A  +  PTPS  SP+
Sbjct: 2329 KKRTVVLTESTVSTALAELATKSFGSSSTSGITGDNATTSSEPTPSGCSPD 2379