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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950721
Clone id TST38A01NGRL0009_H01
Library
Length 623
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_H01. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CCCAATATTTTGAATGTTGGACAACAGCATTTAAAGTCTTTGTCAGGCTTTCAACTGAGG
CCAAGAAAGTTTGCTGGAGGCTGCTTTGATCGATCGCTTCCACTAAGGCTCCATAGGTTC
CACGTATGCGCAGATTATGGGGATAGGAGAGGCTCGGGAGCTGGTGAATTTGTCGCAGGT
TTTGTCCTGGGAGGTTTAGTGTTCGGAGCACTAGGTTACTTATTTGCACCGCAGGTTTCC
TCAAAATTGTTTGGCACAAAAGATGGAGACTTAGAAAGCTCAACGTCCCTTTCTGATGAT
GATGAAGGCATTGCGAAGACGAGACGAAACCTGAATGAAAAGATTGCGAAGTTGAATGCT
GCTATCGATAATGTTTCTGCTCAACTAAGAGCAGATAATGGTTTCACCAACACTGAAGAT
AATGTCACTGAACTCGAGTCTGCAGCTTAAACAGAGAGTTTATAGAAATCTTCACAACTT
CTCTATTGAGGTCTCCAAGGACAAAAATAACATGATTAGGAGCACAATGTTCAAGTGCCA
GTGAATTTGATGTTGCTATTGTTGAAGCTGATGTGACAACATTTATGAGATGTCAAAATG
GCAGTTCTCAGTTTTGTCAAAAA
■■Homology search results ■■ -
sp_hit_id Q921T2
Definition sp|Q921T2|TOIP1_MOUSE Torsin-1A-interacting protein 1 OS=Mus musculus
Align length 48
Score (bit) 31.2
E-value 4.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950721|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_H01, 5'
         (623 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q921T2|TOIP1_MOUSE Torsin-1A-interacting protein 1 OS=Mus mus...    31   4.5  

>sp|Q921T2|TOIP1_MOUSE Torsin-1A-interacting protein 1 OS=Mus
           musculus GN=Tor1aip1 PE=1 SV=1
          Length = 520

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 314 AMPSSSSERDVELSKSPSFVPNNFEETCGANK*PSAPNTKPPRTKPAT 171
           A PS    R+V  S+ P+ V  +FE      + P    T P + +PA+
Sbjct: 47  AHPSRRGRREVRFSEEPAEVYGDFEPRAAKERSPGGRRTPPEKFRPAS 94
tr_hit_id A9TGI6
Definition tr|A9TGI6|A9TGI6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 113
Score (bit) 53.5
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950721|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_H01, 5'
         (623 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TGI6|A9TGI6_PHYPA Predicted protein OS=Physcomitrella paten...    54   1e-05
tr|A7PKV2|A7PKV2_VITVI Chromosome chr7 scaffold_20, whole genome...    48   4e-04
tr|A9NKY1|A9NKY1_PICSI Putative uncharacterized protein OS=Picea...    46   0.002
tr|A9TS03|A9TS03_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.013
tr|A9NMG3|A9NMG3_PICSI Putative uncharacterized protein OS=Picea...    43   0.017
tr|A9PC67|A9PC67_POPTR Putative uncharacterized protein OS=Popul...    42   0.039
tr|A7PB65|A7PB65_VITVI Chromosome chr16 scaffold_10, whole genom...    42   0.039
tr|Q5D1B5|Q5D1B5_XENNE PrtB OS=Xenorhabdus nematophilus GN=prtB ...    41   0.066
tr|Q016K0|Q016K0_OSTTA Chromosome 06 contig 1, DNA sequence OS=O...    40   0.086
tr|Q9C7S3|Q9C7S3_ARATH Putative uncharacterized protein F13A11.2...    40   0.11 
tr|A5B5A2|A5B5A2_VITVI Putative uncharacterized protein OS=Vitis...    40   0.11 
tr|Q9C5U9|Q9C5U9_ARATH Putative uncharacterized protein OS=Arabi...    40   0.15 
tr|Q8W480|Q8W480_ARATH Putative uncharacterized protein OS=Arabi...    40   0.15 
tr|Q8H0X5|Q8H0X5_ARATH Putative uncharacterized protein At5g1666...    40   0.15 
tr|A8MS48|A8MS48_ARATH Uncharacterized protein At5g16660.2 OS=Ar...    40   0.15 
tr|A9PAS3|A9PAS3_POPTR Putative uncharacterized protein OS=Popul...    38   0.43 
tr|A7QPE6|A7QPE6_VITVI Chromosome chr18 scaffold_137, whole geno...    38   0.43 
tr|Q5ZF85|Q5ZF85_PLAMJ Putative uncharacterized protein OS=Plant...    38   0.56 
tr|A8J906|A8J906_CHLRE Predicted protein OS=Chlamydomonas reinha...    38   0.56 
tr|B7FGX7|B7FGX7_MEDTR Putative uncharacterized protein OS=Medic...    37   0.95 
tr|A0CW79|A0CW79_PARTE Chromosome undetermined scaffold_3, whole...    37   1.2  
tr|B4W5H5|B4W5H5_9CYAN Putative uncharacterized protein OS=Micro...    36   1.6  
tr|A8P8T4|A8P8T4_BRUMA Putative uncharacterized protein OS=Brugi...    36   2.1  
tr|B0WJC8|B0WJC8_CULQU Putative uncharacterized protein OS=Culex...    35   3.6  
tr|Q8T9E1|Q8T9E1_DROME SD04681p OS=Drosophila melanogaster GN=CG...    34   8.0  
tr|B3NEA0|B3NEA0_DROER GG16193 OS=Drosophila erecta GN=GG16193 P...    34   8.0  

>tr|A9TGI6|A9TGI6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_169954 PE=4 SV=1
          Length = 163

 Score = 53.5 bits (127), Expect = 1e-05
 Identities = 42/113 (37%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
 Frame = +1

Query: 124 VCADYGDRRGSXXXXXXXXXXXXXXXXXXXXXXXXPQVSSKLF-GTKXXXXXXXXXXXXX 300
           V A+Y DRRG                         PQ+S  L  GT              
Sbjct: 53  VTAEYSDRRGGGAGDFLAGFLIGGAVFGALGYIFAPQISKTLEEGTSVKEDGAATKRPAR 112

Query: 301 XXX----IAKTRRNLNEKIAKLNAAIDNVSAQLRADNGFTNTEDNVTELESAA 447
                  + KTR+NLNEKIA+LNAAID+VSAQLR ++      +N  ELESAA
Sbjct: 113 YLEDDESLEKTRQNLNEKIAQLNAAIDDVSAQLRTED--VGVPNNNVELESAA 163


>tr|A7PKV2|A7PKV2_VITVI Chromosome chr7 scaffold_20, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019327001
           PE=4 SV=1
          Length = 162

 Score = 48.1 bits (113), Expect = 4e-04
 Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
 Frame = +1

Query: 229 PQVSSKLFGT--KXXXXXXXXXXXXXXXXIAKTRRNLNEKIAKLNAAIDNVSAQLRADNG 402
           PQ+S  L G   K                + KTR+ L EKIA+LN+AID+VSAQLRAD+ 
Sbjct: 88  PQISKALAGADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRADDA 147

Query: 403 FTNTEDNVTELESA 444
              +  N  E+E++
Sbjct: 148 PNGSAVNPDEIEAS 161


>tr|A9NKY1|A9NKY1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 164

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 24/43 (55%), Positives = 31/43 (72%)
 Frame = +1

Query: 316 KTRRNLNEKIAKLNAAIDNVSAQLRADNGFTNTEDNVTELESA 444
           KTR+ LNEKIA+LNAAID VS+QLRA++  +      +E E A
Sbjct: 121 KTRKTLNEKIAQLNAAIDEVSSQLRAEDDASEPAVTASEGEPA 163


>tr|A9TS03|A9TS03_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171605 PE=4 SV=1
          Length = 162

 Score = 43.1 bits (100), Expect = 0.013
 Identities = 22/41 (53%), Positives = 33/41 (80%)
 Frame = +1

Query: 319 TRRNLNEKIAKLNAAIDNVSAQLRADNGFTNTEDNVTELES 441
           TR+NLNE+IA+L+AAID+VSAQ++ D      ++ V+E+ES
Sbjct: 123 TRKNLNERIAQLSAAIDDVSAQVKND-----VQNTVSEIES 158


>tr|A9NMG3|A9NMG3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 158

 Score = 42.7 bits (99), Expect = 0.017
 Identities = 22/42 (52%), Positives = 31/42 (73%)
 Frame = +1

Query: 319 TRRNLNEKIAKLNAAIDNVSAQLRADNGFTNTEDNVTELESA 444
           TR +LNEKI++LN+AID+VS QLR  +G   ++    E+ESA
Sbjct: 116 TRNSLNEKISQLNSAIDDVSVQLRVKDGARVSDLGNREVESA 157


>tr|A9PC67|A9PC67_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 176

 Score = 41.6 bits (96), Expect = 0.039
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
 Frame = +1

Query: 229 PQVSSKLFGT--KXXXXXXXXXXXXXXXXIAKTRRNLNEKIAKLNAAIDNVSAQLRADNG 402
           PQ+S  L GT  K                + KTR+ L EKI +LN+AID+VS+QLR+++ 
Sbjct: 102 PQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKILAEKIEQLNSAIDDVSSQLRSEDA 161

Query: 403 FTNTEDNVTELESA 444
                 +  ++E+A
Sbjct: 162 PNGASVHSDDIEAA 175


>tr|A7PB65|A7PB65_VITVI Chromosome chr16 scaffold_10, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00013966001
           PE=4 SV=1
          Length = 158

 Score = 41.6 bits (96), Expect = 0.039
 Identities = 31/130 (23%), Positives = 46/130 (35%), Gaps = 3/130 (2%)
 Frame = +1

Query: 19  GQQHLKSLSGFQLRPRKFAGG---CFDRSLPLRLHRFHVCADYGDRRGSXXXXXXXXXXX 189
           G  HLK+   +  +P  F         R     + +  VCA++                 
Sbjct: 12  GGSHLKARELWSTKPNSFGKTPRLMIQRKSNRNVRKLSVCAEHNGGNKGGGGDFVAGFLL 71

Query: 190 XXXXXXXXXXXXXPQVSSKLFGTKXXXXXXXXXXXXXXXXIAKTRRNLNEKIAKLNAAID 369
                        PQ+   L                    + KTR+ LN KI++LN+AID
Sbjct: 72  GGAVFGTLAYVFAPQIRRSLLNEDEYGFRRAKRPMYYDEGLEKTRQTLNAKISQLNSAID 131

Query: 370 NVSAQLRADN 399
           NVS++LR  N
Sbjct: 132 NVSSRLRGGN 141


>tr|Q5D1B5|Q5D1B5_XENNE PrtB OS=Xenorhabdus nematophilus GN=prtB
           PE=3 SV=2
          Length = 591

 Score = 40.8 bits (94), Expect = 0.066
 Identities = 28/91 (30%), Positives = 45/91 (49%)
 Frame = -2

Query: 289 GTLSFLSLHLLCQTILRKPAVQISNLVLRTLNLPGQNLRQIHQLPSLSYPHNLRIRGTYG 110
           G +  +SL +L Q + + P  + SNL LR+ NL   NLR    + +L     LR R  +G
Sbjct: 163 GAIILISLAILNQWLSQAPLAEASNLSLRSANLASTNLRNAEVIEALGMLPALRHR-WFG 221

Query: 109 ALVEAIDQSSLQQTFLASVESLTKTLNAVVQ 17
                ++   +     AS+ +LTKT+   +Q
Sbjct: 222 LHERFLNFQHIASERSASITALTKTVRMALQ 252


>tr|Q016K0|Q016K0_OSTTA Chromosome 06 contig 1, DNA sequence
           OS=Ostreococcus tauri GN=Ot06g04000 PE=4 SV=1
          Length = 128

 Score = 40.4 bits (93), Expect = 0.086
 Identities = 27/68 (39%), Positives = 35/68 (51%)
 Frame = +1

Query: 229 PQVSSKLFGTKXXXXXXXXXXXXXXXXIAKTRRNLNEKIAKLNAAIDNVSAQLRADNGFT 408
           PQ+S  L G K                +  TRRNLNEKIA LN+AIDN S++  A++G  
Sbjct: 45  PQLSKTLLGGKRALSKALDEESEDE--LESTRRNLNEKIAALNSAIDNFSSE--AESGIE 100

Query: 409 NTEDNVTE 432
            T   + E
Sbjct: 101 KTVTKLGE 108


>tr|Q9C7S3|Q9C7S3_ARATH Putative uncharacterized protein F13A11.2
           (Putative uncharacterized protein At1g42960)
           OS=Arabidopsis thaliana GN=At1g42960 PE=2 SV=1
          Length = 168

 Score = 40.0 bits (92), Expect = 0.11
 Identities = 20/46 (43%), Positives = 33/46 (71%)
 Frame = +1

Query: 310 IAKTRRNLNEKIAKLNAAIDNVSAQLRADNGFTNTEDNVTELESAA 447
           + KTR+ L EKIA+LN+AID+VS+QL++++       +  E+E+ A
Sbjct: 123 LEKTRKVLAEKIAQLNSAIDDVSSQLKSEDTPNGAALSTDEIEATA 168