DK950732 |
Clone id |
TST38A01NGRL0009_H13 |
Library |
TST38 |
Length |
658 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_H13. 5' end sequence. |
Accession |
DK950732 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL489Contig1 |
Sequence |
TGCACCTCGCTCTAGCTATGGCTTCCAAGCTTGGAGTGGCCACCCCCTCCTCCTCTGCCA TGATCTCCACCAAGAGCAACTCCATCTCCTTCAGCTCACAGTTGGGCGGACAATCGCTGA ATGCCACCACTGCAGCCGCCCGCTTTCCGCACTCCCGCCCCCGCTGCCATGTCTTCCTCA TCACCAACGTGGCTGCAGAGCAGCGCCCCATCATCATCGGATTAGCTGCCGATTCTGGTT GTGGTAAGAGCACATTCATGCGCAGGCTCACAAGTGTGTTTGGTGGAGCTGCCTCGCCTC CCAAAGGCGGTAACCCGGACTCCAACACTTTAATCAGCGACACTACGACAGTAATCTGCT TGGATGACTACCATTCCCCCCACCGCACAGGGCGTAAGGAGAAAGGAAAAAAAGAGCTTG ATCCGAAAGCAAACAACTTCGACCTCATGTATGAGCAAGTGAAAGCCATCAAAGATGGCA AGCCGATTGAGAAACCTATTTACAATCATGTCAGTGGCCTTCTCGACCCCCCTGAGACGA TCGTGCCCCCGAAGATCTTTGTCATTGAGGGCCTACACCCCATGTTCGATGCTCGAGTGC GGGAGCTTCTTGATTTCAGCATTTACCTCGACATCAGTGATGAAGTCAAGTTTGCATG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P26302 |
Definition |
sp|P26302|KPPR_WHEAT Phosphoribulokinase, chloroplastic OS=Triticum aestivum |
Align length |
177 |
Score (bit) |
277.0 |
E-value |
3.0e-74 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950732|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0009_H13, 5' (658 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P26302|KPPR_WHEAT Phosphoribulokinase, chloroplastic OS=Triti... 277 3e-74 sp|P27774|KPPR_MESCR Phosphoribulokinase, chloroplastic OS=Mesem... 269 8e-72 sp|P09559|KPPR_SPIOL Phosphoribulokinase, chloroplastic OS=Spina... 263 8e-70 sp|P25697|KPPR_ARATH Phosphoribulokinase, chloroplastic OS=Arabi... 259 7e-69 sp|P19824|KPPR_CHLRE Phosphoribulokinase, chloroplastic OS=Chlam... 232 1e-60 sp|P37101|KPPR_SYNY3 Phosphoribulokinase OS=Synechocystis sp. (s... 182 1e-45 sp|P85112|KPPR_VITSX Phosphoribulokinase, chloroplastic (Fragmen... 104 4e-22 sp|Q17413|UCK_CAEEL Probable uridine-cytidine kinase OS=Caenorha... 69 2e-11 sp|P67414|URK_STRR6 Uridine kinase OS=Streptococcus pneumoniae (... 66 2e-10 sp|P67413|URK_STRPN Uridine kinase OS=Streptococcus pneumoniae G... 66 2e-10 sp|Q04KA9|URK_STRP2 Uridine kinase OS=Streptococcus pneumoniae s... 66 2e-10 sp|A8AWT2|URK_STRGC Uridine kinase OS=Streptococcus gordonii (st... 65 2e-10 sp|P27515|URK1_YEAST Uridine kinase OS=Saccharomyces cerevisiae ... 64 9e-10 sp|Q8XJI6|URK_CLOPE Uridine kinase OS=Clostridium perfringens GN... 63 1e-09 sp|Q0TPI4|URK_CLOP1 Uridine kinase OS=Clostridium perfringens (s... 63 1e-09 sp|Q8Y727|URK_LISMO Uridine kinase OS=Listeria monocytogenes GN=... 62 3e-09 sp|Q71ZH3|URK_LISMF Uridine kinase OS=Listeria monocytogenes ser... 62 3e-09 sp|Q9Z7H0|URK_CHLPN Uridine kinase OS=Chlamydia pneumoniae GN=ud... 62 3e-09 sp|Q8E0A8|URK_STRA5 Uridine kinase OS=Streptococcus agalactiae s... 61 5e-09 sp|Q3K1N1|URK_STRA1 Uridine kinase OS=Streptococcus agalactiae s... 61 5e-09 sp|Q92BL6|URK_LISIN Uridine kinase OS=Listeria innocua GN=udk PE... 61 5e-09 sp|Q9PQF9|URK_UREPA Uridine kinase OS=Ureaplasma parvum GN=udk P... 61 6e-09 sp|B1AIX1|URK_UREP2 Uridine kinase OS=Ureaplasma parvum serovar ... 61 6e-09 sp|Q8E5Y5|URK_STRA3 Uridine kinase OS=Streptococcus agalactiae s... 61 6e-09 sp|Q9KDD8|URK_BACHD Uridine kinase OS=Bacillus halodurans GN=udk... 61 6e-09 sp|Q03K46|URK_STRTD Uridine kinase OS=Streptococcus thermophilus... 60 8e-09 sp|Q5M3V0|URK_STRT2 Uridine kinase OS=Streptococcus thermophilus... 60 8e-09 sp|Q5LZ98|URK_STRT1 Uridine kinase OS=Streptococcus thermophilus... 60 8e-09 sp|A7MHG8|URK_ENTS8 Uridine kinase OS=Enterobacter sakazakii (st... 60 8e-09 sp|A7GGE1|URK_CLOBL Uridine kinase OS=Clostridium botulinum (str... 60 8e-09
>sp|P26302|KPPR_WHEAT Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1 Length = 404
Score = 277 bits (709), Expect = 3e-74 Identities = 139/177 (78%), Positives = 153/177 (86%) Frame = +3
Query: 126 TTAAARFPHSRPRCHVFLITNVAAEQRPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPK 305 TT ++R ++R F ++ A ++PI+IGLAADSGCGKSTFMRRLTSVFGGAA PPK Sbjct: 33 TTRSSRRSNTRHGARTFQVS--CAVEQPIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPK 90
Query: 306 GGNPDSNTLISDTTTVICLDDYHSPHRTGRKEKGKKELDPKANNFDLMYEQVKAIKDGKP 485 GGNPDSNTLISDTTTVICLDDYHS RTGRKEKG LDPKAN+FDLMYEQVKAIK+GK Sbjct: 91 GGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPKANDFDLMYEQVKAIKEGKA 150
Query: 486 IEKPIYNHVSGLLDPPETIVPPKIFVIEGLHPMFDARVRELLDFSIYLDISDEVKFA 656 IEKPIYNHV+GLLDP E I PPKIFVIEGLHPM+D RVRELLDFSIYLDIS+EVKFA Sbjct: 151 IEKPIYNHVTGLLDPAELIQPPKIFVIEGLHPMYDERVRELLDFSIYLDISNEVKFA 207
>sp|P27774|KPPR_MESCR Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1 Length = 397
Score = 269 bits (688), Expect = 8e-72 Identities = 130/160 (81%), Positives = 145/160 (90%) Frame = +3
Query: 177 LITNVAAEQRPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVI 356 +IT +A + + I+IGLAADSGCGKSTFMRRLTSVFGGAA PP+GGNPDSNTLISDTTTVI Sbjct: 41 VITCLAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPRGGNPDSNTLISDTTTVI 100
Query: 357 CLDDYHSPHRTGRKEKGKKELDPKANNFDLMYEQVKAIKDGKPIEKPIYNHVSGLLDPPE 536 CLDDYHS RTGRKEKG LDP+AN+FDLMYEQVKA+K+GK +EKPIYNHV+GLLD PE Sbjct: 101 CLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKEGKAVEKPIYNHVTGLLDAPE 160
Query: 537 TIVPPKIFVIEGLHPMFDARVRELLDFSIYLDISDEVKFA 656 I PPKI VIEGLHPMFD+RVR+LLDFSIYLDIS+EVKFA Sbjct: 161 LIKPPKILVIEGLHPMFDSRVRDLLDFSIYLDISNEVKFA 200
>sp|P09559|KPPR_SPIOL Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1 Length = 402
Score = 263 bits (671), Expect = 8e-70 Identities = 127/154 (82%), Positives = 140/154 (90%) Frame = +3
Query: 195 AEQRPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYH 374 ++Q+ I+IGLAADSGCGKSTFMRRLTSVFGGAA PPKGGNPDSNTLISDTTTVICLDD+H Sbjct: 52 SQQQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDFH 111
Query: 375 SPHRTGRKEKGKKELDPKANNFDLMYEQVKAIKDGKPIEKPIYNHVSGLLDPPETIVPPK 554 S R GRK + LDPKAN+FDLMYEQVKA+K+GK ++KPIYNHVSGLLDPPE I PPK Sbjct: 112 SLDRNGRKVEKVTALDPKANDFDLMYEQVKALKEGKAVDKPIYNHVSGLLDPPELIQPPK 171
Query: 555 IFVIEGLHPMFDARVRELLDFSIYLDISDEVKFA 656 I VIEGLHPM+DARVRELLDFSIYLDIS+EVKFA Sbjct: 172 ILVIEGLHPMYDARVRELLDFSIYLDISNEVKFA 205
>sp|P25697|KPPR_ARATH Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=1 SV=1 Length = 395
Score = 259 bits (663), Expect = 7e-69 Identities = 127/158 (80%), Positives = 138/158 (87%) Frame = +3
Query: 183 TNVAAEQRPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICL 362 T + Q I+IGLAADSGCGKSTFMRRLTSVFGGAA PPKGGNPDSNTLISDTTTVICL Sbjct: 42 TLITCAQETIVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICL 101
Query: 363 DDYHSPHRTGRKEKGKKELDPKANNFDLMYEQVKAIKDGKPIEKPIYNHVSGLLDPPETI 542 DDYHS R GRKE+ LDP+AN+FDLMYEQVKA+K+G +EKPIYNHV+GLLDPPE I Sbjct: 102 DDYHSLDRYGRKEQKVTALDPRANDFDLMYEQVKALKNGIAVEKPIYNHVTGLLDPPELI 161
Query: 543 VPPKIFVIEGLHPMFDARVRELLDFSIYLDISDEVKFA 656 PPKI VIEGLHPMFD RVR+LLDFSIYLDIS+EVKFA Sbjct: 162 QPPKILVIEGLHPMFDERVRDLLDFSIYLDISNEVKFA 199
>sp|P19824|KPPR_CHLRE Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=1 Length = 375
Score = 232 bits (592), Expect = 1e-60 Identities = 110/155 (70%), Positives = 125/155 (80%) Frame = +3
Query: 192 AAEQRPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDY 371 A + + ++IGLAADSGCGKSTFMRR+TS+FGG PP GGNPDSNTLISD TTVICLDDY Sbjct: 31 ADKDKTVVIGLAADSGCGKSTFMRRMTSIFGGVPKPPAGGNPDSNTLISDMTTVICLDDY 90
Query: 372 HSPHRTGRKEKGKKELDPKANNFDLMYEQVKAIKDGKPIEKPIYNHVSGLLDPPETIVPP 551 H R GRK KG L P+A NFDLMY QVKA+K+GK ++KPIYNHVSGL+D PE I P Sbjct: 91 HCLDRNGRKVKGVTALAPEAQNFDLMYNQVKALKEGKSVDKPIYNHVSGLIDAPEKIESP 150
Query: 552 KIFVIEGLHPMFDARVRELLDFSIYLDISDEVKFA 656 I VIEGLHP +D RV ELLDF IYLDISD++KFA Sbjct: 151 PILVIEGLHPFYDKRVAELLDFKIYLDISDDIKFA 185
>sp|P37101|KPPR_SYNY3 Phosphoribulokinase OS=Synechocystis sp. (strain PCC 6803) GN=prk PE=2 SV=1 Length = 332
Score = 182 bits (463), Expect = 1e-45 Identities = 89/149 (59%), Positives = 107/149 (71%) Frame = +3
Query: 204 RPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYHSPH 383 R ++IG+A DSGCGKSTF+RRLT +FG + TVICLDDYHS Sbjct: 7 RVVLIGVAGDSGCGKSTFLRRLTDLFG-----------------EEFMTVICLDDYHSLD 49
Query: 384 RTGRKEKGKKELDPKANNFDLMYEQVKAIKDGKPIEKPIYNHVSGLLDPPETIVPPKIFV 563 R GRK G LDP+ANNFDLMYEQ+K +K G+ I KPIYNH +GLLDPPE + P K+ V Sbjct: 50 RQGRKAAGVTALDPRANNFDLMYEQIKTLKSGQSIMKPIYNHETGLLDPPEKVEPNKVVV 109
Query: 564 IEGLHPMFDARVRELLDFSIYLDISDEVK 650 IEGLHP++D RVREL+DF +YLDIS+EVK Sbjct: 110 IEGLHPLYDERVRELVDFGVYLDISEEVK 138
>sp|P85112|KPPR_VITSX Phosphoribulokinase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1 Length = 89
Score = 104 bits (260), Expect = 4e-22 Identities = 57/92 (61%), Positives = 68/92 (73%), Gaps = 7/92 (7%) Frame = +3
Query: 267 LTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYHSPHRTGRKEKGKKELDPKANNFDL 446 LTSVFGGAA PP+GGNPDSNTLISDTTTVICLDDYHS ++G LDP+AN+FDL Sbjct: 1 LTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDYHS------LDRGVTALDPRANDFDL 54
Query: 447 MYEQVK-----AIKDGKPIEKPIY--NHVSGL 521 MYEQVK A D + +++ IY +H+S L Sbjct: 55 MYEQVKKPDFDAYIDPQKLDELIYVESHLSNL 86
>sp|Q17413|UCK_CAEEL Probable uridine-cytidine kinase OS=Caenorhabditis elegans GN=B0001.4 PE=2 SV=2 Length = 248
Score = 68.9 bits (167), Expect = 2e-11 Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 7/153 (4%) Frame = +3
Query: 207 PIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYHSPHR 386 P++IG+A + CGKST + R+ N ++N S I HS +R Sbjct: 8 PLLIGVAGGTSCGKSTIVERIIE------------NLNANAKQSGRQIDIVHLSLHSFYR 55
Query: 387 TGRKEK------GKKELD-PKANNFDLMYEQVKAIKDGKPIEKPIYNHVSGLLDPPETIV 545 E+ GK D P NFDL+ E ++ + DGK +E P Y+ ++ ++ T+ Sbjct: 56 ELSAEEKILAREGKFNFDHPDQINFDLLAETLQNMIDGKTVEIPKYDMITSSMNGTVTVE 115
Query: 546 PPKIFVIEGLHPMFDARVRELLDFSIYLDISDE 644 P K+ +IEG+ ++D RVR+LL ++++ + E Sbjct: 116 PAKVIIIEGILLLYDERVRKLLSTKLFVEKNAE 148
>sp|P67414|URK_STRR6 Uridine kinase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=udk PE=3 SV=1 Length = 212
Score = 65.9 bits (159), Expect = 2e-10 Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 4/155 (2%) Frame = +3
Query: 198 EQRPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYHS 377 + RPIIIG+ SG GK++ R + S F PD + ++I D Y+ Sbjct: 2 QNRPIIIGVTGGSGGGKTSVSRAILSHF-----------PD------EKISMIEHDSYYK 44
Query: 378 P--HRTGRKEKGKKELD-PKANNFDLMYEQVKAIKDGKPIEKPIYNHVSGLLDPPETIVP 548 H T +E+ K D P A + DLM EQ+K + G+P++ P Y++ Sbjct: 45 DQSHLTF-EERVKTNYDHPFAFDTDLMIEQIKELLAGRPVDIPTYDYTEHTRSSKTYRQE 103
Query: 549 PK-IFVIEGLHPMFDARVRELLDFSIYLDISDEVK 650 P+ +F++EG+ + D R+R+L+D I++D D+V+ Sbjct: 104 PQDVFIVEGILVLEDKRLRDLMDIKIFVDTDDDVR 138
>sp|P67413|URK_STRPN Uridine kinase OS=Streptococcus pneumoniae GN=udk PE=3 SV=1 Length = 212
Score = 65.9 bits (159), Expect = 2e-10 Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 4/155 (2%) Frame = +3
Query: 198 EQRPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYHS 377 + RPIIIG+ SG GK++ R + S F PD + ++I D Y+ Sbjct: 2 QNRPIIIGVTGGSGGGKTSVSRAILSHF-----------PD------EKISMIEHDSYYK 44
Query: 378 P--HRTGRKEKGKKELD-PKANNFDLMYEQVKAIKDGKPIEKPIYNHVSGLLDPPETIVP 548 H T +E+ K D P A + DLM EQ+K + G+P++ P Y++ Sbjct: 45 DQSHLTF-EERVKTNYDHPFAFDTDLMIEQIKELLAGRPVDIPTYDYTEHTRSSKTYRQE 103
Query: 549 PK-IFVIEGLHPMFDARVRELLDFSIYLDISDEVK 650 P+ +F++EG+ + D R+R+L+D I++D D+V+ Sbjct: 104 PQDVFIVEGILVLEDKRLRDLMDIKIFVDTDDDVR 138
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5BE19 |
Definition |
tr|A5BE19|A5BE19_VITVI Phosphoribulokinase OS=Vitis vinifera |
Align length |
202 |
Score (bit) |
277.0 |
E-value |
5.0e-73 |
Report |
|