NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950735
Clone id TST38A01NGRL0009_H16
Library
Length 603
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_H16. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CAAAATTCAGATTCTGTAACTCATTACATCATTACTACTTCTCGAAGATAAGAGGAGATC
AAAACTAGAAAGGGTCTTTAACACATATCGATTACTAATCCGTCGCACCTACCAACAATC
AATTACTAGTTAATGTGTAAGGTATTTTGGTAAGTATTTGTTTGTATCAAATGTTTACAA
ATTGAAATGGTTGAAGCATTACTCTCTGGAATTGTGTTAGGTTTGATTCCAATAACCCTA
GCTGGATTATTTGTAACTGCATACCTTCAATACCGACGGGGCGATCAATTAGATATTCGA
TGAATATCTAGTTAGATATCGTCCTAAACAAAAGGGATATTTTGGGATTGGGAAGGTAAA
TGAATTAAAAATATATATGGCGAAAGCCCCCCCCCCCCTCCCACCACTATTCCTTTCGAG
TATTTTCTGTCCGTATTTCAAAAACAATTAGCAGATGTGGAAGATCGCTTCTACCACGAT
AATCTTTAGTTCTACGTCCACTTCAATTTTGGGGCGTATCGCTTAAGCAATCCCTAGCAG
TAGGCACGCCCTGCAGGATTCGAACCTACCACATCGGGTTTTGGAGACCCGCGTTCTACC
GTA
■■Homology search results ■■ -
sp_hit_id Q85FK3
Definition sp|Q85FK3|PETG_ADICA Cytochrome b6-f complex subunit 5 OS=Adiantum capillus-veneris
Align length 38
Score (bit) 75.5
E-value 2.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950735|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_H16, 5'
         (603 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FK3|PETG_ADICA Cytochrome b6-f complex subunit 5 OS=Adiant...    75   2e-13
sp|Q6YXM1|PETG_PHYPA Cytochrome b6-f complex subunit 5 OS=Physco...    73   1e-12
sp|Q85AH1|PETG_ANTFO Cytochrome b6-f complex subunit 5 OS=Anthoc...    73   1e-12
sp|A2T352|PETG_ANGEV Cytochrome b6-f complex subunit 5 OS=Angiop...    73   1e-12
sp|B1VKE4|PETG_CRYJA Cytochrome b6-f complex subunit 5 OS=Crypto...    72   3e-12
sp|Q32RH6|PETG_ZYGCR Cytochrome b6-f complex subunit 5 OS=Zygnem...    71   5e-12
sp|P12120|PETG_MARPO Cytochrome b6-f complex subunit 5 OS=Marcha...    71   5e-12
sp|B2Y1X8|PETG_WELMI Cytochrome b6-f complex subunit 5 OS=Welwit...    70   6e-12
sp|Q9TKY8|PETG_NEPOL Cytochrome b6-f complex subunit 5 OS=Nephro...    70   6e-12
sp|A6BM20|PETG_GNEPA Cytochrome b6-f complex subunit 5 OS=Gnetum...    70   8e-12
sp|P56305|PETG_CHLVU Cytochrome b6-f complex subunit 5 OS=Chlore...    70   8e-12
sp|Q8M9Y4|PETG_CHAGL Cytochrome b6-f complex subunit 5 OS=Chaeto...    70   8e-12
sp|Q32RT5|PETG_STAPU Cytochrome b6-f complex subunit 5 OS=Staura...    70   1e-11
sp|Q9MUN3|PETG_MESVI Cytochrome b6-f complex subunit 5 OS=Mesost...    69   2e-11
sp|Q1ACI5|PETG_CHAVU Cytochrome b6-f complex subunit 5 OS=Chara ...    69   2e-11
sp|Q09FU2|PETG_NANDO Cytochrome b6-f complex subunit 5 OS=Nandin...    69   2e-11
sp|A9L9B5|PETG_LEMMI Cytochrome b6-f complex subunit 5 OS=Lemna ...    69   2e-11
sp|B2XWM4|PETG_FAGEA Cytochrome b6-f complex subunit 5 OS=Fagopy...    69   2e-11
sp|P41614|PETG_PINTH Cytochrome b6-f complex subunit 5 OS=Pinus ...    68   3e-11
sp|A4QM25|PETG_PINKO Cytochrome b6-f complex subunit 5 OS=Pinus ...    68   3e-11
sp|Q8WI02|PETG_PSINU Cytochrome b6-f complex subunit 5 OS=Psilot...    67   5e-11
sp|Q09G27|PETG_PLAOC Cytochrome b6-f complex subunit 5 OS=Platan...    67   5e-11
sp|Q5SD34|PETG_HUPLU Cytochrome b6-f complex subunit 5 OS=Huperz...    67   5e-11
sp|P69463|PETG_WHEAT Cytochrome b6-f complex subunit 5 OS=Tritic...    67   7e-11
sp|Q0ZJ01|PETG_VITVI Cytochrome b6-f complex subunit 5 OS=Vitis ...    67   7e-11
sp|P69462|PETG_TOBAC Cytochrome b6-f complex subunit 5 OS=Nicoti...    67   7e-11
sp|P69461|PETG_SPIOL Cytochrome b6-f complex subunit 5 OS=Spinac...    67   7e-11
sp|Q2PMR5|PETG_SOYBN Cytochrome b6-f complex subunit 5 OS=Glycin...    67   7e-11
sp|A1E9U3|PETG_SORBI Cytochrome b6-f complex subunit 5 OS=Sorghu...    67   7e-11
sp|Q2VEF9|PETG_SOLTU Cytochrome b6-f complex subunit 5 OS=Solanu...    67   7e-11

>sp|Q85FK3|PETG_ADICA Cytochrome b6-f complex subunit 5 OS=Adiantum
           capillus-veneris GN=petG PE=2 SV=2
          Length = 38

 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = +1

Query: 187 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDIR 300
           MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDIR
Sbjct: 1   MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDIR 38


>sp|Q6YXM1|PETG_PHYPA Cytochrome b6-f complex subunit 5
           OS=Physcomitrella patens GN=petG PE=3 SV=1
          Length = 37

 Score = 72.8 bits (177), Expect = 1e-12
 Identities = 36/37 (97%), Positives = 37/37 (100%)
 Frame = +1

Query: 187 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 297
           MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLD+
Sbjct: 1   MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37


>sp|Q85AH1|PETG_ANTFO Cytochrome b6-f complex subunit 5
           OS=Anthoceros formosae GN=petG PE=2 SV=1
          Length = 37

 Score = 72.8 bits (177), Expect = 1e-12
 Identities = 36/37 (97%), Positives = 37/37 (100%)
 Frame = +1

Query: 187 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 297
           MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLD+
Sbjct: 1   MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37


>sp|A2T352|PETG_ANGEV Cytochrome b6-f complex subunit 5
           OS=Angiopteris evecta GN=petG PE=3 SV=1
          Length = 37

 Score = 72.8 bits (177), Expect = 1e-12
 Identities = 36/37 (97%), Positives = 37/37 (100%)
 Frame = +1

Query: 187 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 297
           MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLD+
Sbjct: 1   MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37


>sp|B1VKE4|PETG_CRYJA Cytochrome b6-f complex subunit 5
           OS=Cryptomeria japonica GN=petG PE=3 SV=1
          Length = 37

 Score = 71.6 bits (174), Expect = 3e-12
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = +1

Query: 187 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 297
           M+E LLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI
Sbjct: 1   MIEVLLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 37


>sp|Q32RH6|PETG_ZYGCR Cytochrome b6-f complex subunit 5 OS=Zygnema
           circumcarinatum GN=petG PE=3 SV=1
          Length = 37

 Score = 70.9 bits (172), Expect = 5e-12
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = +1

Query: 187 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 297
           MVE LLSGIVLGLIPITLAGLFVTAYLQYRRGDQLD+
Sbjct: 1   MVEPLLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37


>sp|P12120|PETG_MARPO Cytochrome b6-f complex subunit 5
           OS=Marchantia polymorpha GN=petG PE=3 SV=1
          Length = 37

 Score = 70.9 bits (172), Expect = 5e-12
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = +1

Query: 187 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 297
           MVEALLSGIVLGLIPITL GLFVTAYLQYRRGDQLD+
Sbjct: 1   MVEALLSGIVLGLIPITLLGLFVTAYLQYRRGDQLDL 37


>sp|B2Y1X8|PETG_WELMI Cytochrome b6-f complex subunit 5
           OS=Welwitschia mirabilis GN=petG PE=3 SV=1
          Length = 37

 Score = 70.5 bits (171), Expect = 6e-12
 Identities = 35/37 (94%), Positives = 35/37 (94%)
 Frame = +1

Query: 187 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 297
           MVE LLSGIVLGLIPITL GLFVTAYLQYRRGDQLDI
Sbjct: 1   MVETLLSGIVLGLIPITLVGLFVTAYLQYRRGDQLDI 37


>sp|Q9TKY8|PETG_NEPOL Cytochrome b6-f complex subunit 5
           OS=Nephroselmis olivacea GN=petG PE=3 SV=1
          Length = 37

 Score = 70.5 bits (171), Expect = 6e-12
 Identities = 34/37 (91%), Positives = 37/37 (100%)
 Frame = +1

Query: 187 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 297
           MVEALLSGIVLGLIP+TLAGLFVTAYLQYRRGDQL++
Sbjct: 1   MVEALLSGIVLGLIPVTLAGLFVTAYLQYRRGDQLNL 37


>sp|A6BM20|PETG_GNEPA Cytochrome b6-f complex subunit 5 OS=Gnetum
           parvifolium GN=petG PE=3 SV=1
          Length = 37

 Score = 70.1 bits (170), Expect = 8e-12
 Identities = 34/37 (91%), Positives = 36/37 (97%)
 Frame = +1

Query: 187 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 297
           MVE LLSGIVLGL+PITLAGLFVTAYLQYRRGD+LDI
Sbjct: 1   MVETLLSGIVLGLVPITLAGLFVTAYLQYRRGDRLDI 37
tr_hit_id B3IWG7
Definition tr|B3IWG7|B3IWG7_TAKLE Cytochrome b6/f complex subunit V OS=Takakia lepidozioides
Align length 37
Score (bit) 72.8
E-value 1.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950735|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_H16, 5'
         (603 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3IWG7|B3IWG7_TAKLE Cytochrome b6/f complex subunit V OS=Taka...    73   1e-11
tr|Q4FFX1|Q4FFX1_GINBI Cytochrome b6/f complex subunit V (Fragme...    70   7e-11
tr|B7ZI30|B7ZI30_WELMI Cytochrome b6/f complex subunit V OS=Welw...    70   7e-11
tr|B7ZI95|B7ZI95_GNEPA Cytochrome b6/f complex subunit V OS=Gnet...    70   1e-10
tr|Q4FFW9|Q4FFW9_RANMC Cytochrome b6/f complex subunit V (Fragme...    69   3e-10
tr|B7ZIQ4|B7ZIQ4_KETDA Cytochrome b6/f complex subunit V OS=Kete...    68   4e-10
tr|B8R471|B8R471_TRISU Cytochrome b6/f complex subunit V OS=Trif...    68   5e-10
tr|Q69X69|Q69X69_ORYSJ Cytochrome b /f complex subunit 5_chlorop...    67   8e-10
tr|Q4FFX2|Q4FFX2_ACOAM Cytochrome b6/f complex subunit V (Fragme...    67   8e-10
tr|Q4FFW8|Q4FFW8_TYPLA Cytochrome b6/f complex subunit V (Fragme...    67   8e-10
tr|Q4FFW7|Q4FFW7_9ASPA Cytochrome b6/f complex subunit V (Fragme...    67   8e-10
tr|Q2Z1Q7|Q2Z1Q7_BETVU Cytochrome b6/f complex subunit 5 OS=Beta...    67   8e-10
tr|Q06R46|Q06R46_9LAMI Cytochrome b6/f complex subunit V OS=Fors...    67   8e-10
tr|Q06R20|Q06R20_9LAMI Cytochrome b6/f complex subunit V OS=Jasm...    67   8e-10
tr|Q06QZ3|Q06QZ3_9LAMI Cytochrome b6/f complex subunit V OS=Jasm...    67   8e-10
tr|Q06QW7|Q06QW7_9LAMI Cytochrome b6/f complex subunit V OS=Jasm...    67   8e-10
tr|Q06QT8|Q06QT8_9LAMI Cytochrome b6/f complex subunit V OS=Meno...    67   8e-10
tr|B7UCF4|B7UCF4_9POAL PetG OS=Typha domingensis PE=4 SV=1             67   8e-10
tr|B5AH21|B5AH21_9ROSI Cytochrome b6/f complex subunit V OS=Gony...    67   8e-10
tr|B2D072|B2D072_OLEEU Cytochrome b6/f complex subunit V OS=Olea...    67   8e-10
tr|A9QC50|A9QC50_TRACE Cytochrome b6/f complex subunit V (Fragme...    67   8e-10
tr|A9QBX6|A9QBX6_9ASTR Cytochrome b6/f complex subunit V (Fragme...    67   8e-10
tr|A9QBH9|A9QBH9_MUSAC Cytochrome b6/f complex subunit V (Fragme...    67   8e-10
tr|A9QB87|A9QB87_ELAOL Cytochrome b6/f complex subunit V (Fragme...    67   8e-10
tr|A7QCW9|A7QCW9_VITVI Cyt b6 f complex subunit V OS=Vitis vinif...    67   8e-10
tr|B7T3Y0|B7T3Y0_9ROSI Cytochrome b6/f complex subunit V OS=Mons...    67   1e-09
tr|B7T3Q9|B7T3Q9_9ROSI Cytochrome b6/f complex subunit V OS=Mons...    67   1e-09
tr|B6RRE8|B6RRE8_9CARY Cyt b6/f complex subunit V OS=Heliosperma...    66   1e-09
tr|B0LP53|B0LP53_9CARY Cyt b6/f complex subunit V OS=Silene atoc...    66   1e-09
tr|B0LP32|B0LP32_9CARY Cyt b6/f complex subunit V OS=Silene aegy...    66   1e-09

>tr|B3IWG7|B3IWG7_TAKLE Cytochrome b6/f complex subunit V OS=Takakia
           lepidozioides GN=petG PE=4 SV=1
          Length = 37

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 36/37 (97%), Positives = 37/37 (100%)
 Frame = +1

Query: 187 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 297
           MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLD+
Sbjct: 1   MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37


>tr|Q4FFX1|Q4FFX1_GINBI Cytochrome b6/f complex subunit V (Fragment)
           OS=Ginkgo biloba GN=petG PE=4 SV=1
          Length = 37

 Score = 70.5 bits (171), Expect = 7e-11
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = +1

Query: 187 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 297
           M+EAL SGIVLGLIPITLAGLFVTAYLQYRRGDQLDI
Sbjct: 1   MIEALPSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 37


>tr|B7ZI30|B7ZI30_WELMI Cytochrome b6/f complex subunit V
           OS=Welwitschia mirabilis GN=petG PE=4 SV=1
          Length = 37

 Score = 70.5 bits (171), Expect = 7e-11
 Identities = 35/37 (94%), Positives = 35/37 (94%)
 Frame = +1

Query: 187 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 297
           MVE LLSGIVLGLIPITL GLFVTAYLQYRRGDQLDI
Sbjct: 1   MVETLLSGIVLGLIPITLVGLFVTAYLQYRRGDQLDI 37


>tr|B7ZI95|B7ZI95_GNEPA Cytochrome b6/f complex subunit V OS=Gnetum
           parvifolium GN=petG PE=4 SV=1
          Length = 37

 Score = 70.1 bits (170), Expect = 1e-10
 Identities = 34/37 (91%), Positives = 36/37 (97%)
 Frame = +1

Query: 187 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 297
           MVE LLSGIVLGL+PITLAGLFVTAYLQYRRGD+LDI
Sbjct: 1   MVETLLSGIVLGLVPITLAGLFVTAYLQYRRGDRLDI 37


>tr|Q4FFW9|Q4FFW9_RANMC Cytochrome b6/f complex subunit V (Fragment)
           OS=Ranunculus macranthus GN=petG PE=4 SV=1
          Length = 37

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 33/37 (89%), Positives = 35/37 (94%)
 Frame = +1

Query: 187 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 297
           M+E LL GIVLGLIPITLAGLFVTAYLQYRRGDQLD+
Sbjct: 1   MIEVLLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37


>tr|B7ZIQ4|B7ZIQ4_KETDA Cytochrome b6/f complex subunit V
           OS=Keteleeria davidiana GN=petG PE=4 SV=1
          Length = 37

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 34/37 (91%), Positives = 35/37 (94%)
 Frame = +1

Query: 187 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 297
           M+EAL SGIVLGLIPITLAGLFVTAY QYRRGDQLDI
Sbjct: 1   MIEALPSGIVLGLIPITLAGLFVTAYSQYRRGDQLDI 37


>tr|B8R471|B8R471_TRISU Cytochrome b6/f complex subunit V
           OS=Trifolium subterraneum GN=petG PE=4 SV=1
          Length = 37

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 33/37 (89%), Positives = 34/37 (91%)
 Frame = +1

Query: 187 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 297
           M+E  L GIVLGLIPITLAGLFVTAYLQYRRGDQLDI
Sbjct: 1   MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 37


>tr|Q69X69|Q69X69_ORYSJ Cytochrome b /f complex subunit
           5_chloroplast OS=Oryza sativa subsp. japonica
           GN=P0642B07.26 PE=4 SV=1
          Length = 37

 Score = 67.0 bits (162), Expect = 8e-10
 Identities = 32/37 (86%), Positives = 34/37 (91%)
 Frame = +1

Query: 187 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 297
           M+E  L GIVLGLIPITLAGLFVTAYLQYRRGDQLD+
Sbjct: 1   MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37


>tr|Q4FFX2|Q4FFX2_ACOAM Cytochrome b6/f complex subunit V (Fragment)
           OS=Acorus americanus GN=petG PE=4 SV=1
          Length = 37

 Score = 67.0 bits (162), Expect = 8e-10
 Identities = 32/37 (86%), Positives = 34/37 (91%)
 Frame = +1

Query: 187 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 297
           M+E  L GIVLGLIPITLAGLFVTAYLQYRRGDQLD+
Sbjct: 1   MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37


>tr|Q4FFW8|Q4FFW8_TYPLA Cytochrome b6/f complex subunit V (Fragment)
           OS=Typha latifolia GN=petG PE=4 SV=1
          Length = 37

 Score = 67.0 bits (162), Expect = 8e-10
 Identities = 32/37 (86%), Positives = 34/37 (91%)
 Frame = +1

Query: 187 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 297
           M+E  L GIVLGLIPITLAGLFVTAYLQYRRGDQLD+
Sbjct: 1   MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37