| DK950739 |
| Clone id |
TST38A01NGRL0009_H20 |
| Library |
TST38 |
| Length |
696 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_H20. 5' end sequence. |
| Accession |
DK950739 |
| Tissue type |
prothallia |
| Developmental stage |
gametophyte |
| Contig ID |
- |
| Sequence |
GTTTCTTCGGAAGAGAAGCAGAGGAGGCCTTTCCTTCTCAGTGCACAGAGCTCGAGCTTC
TATGGAGCCCCTCGCACCTCCACTGAAGAAGTCGCGGCCAGACTTTCTATCAAACGGTGG
CAACTTGCCATCTTCTTTTCCTCTACACGCTCCTGCAGGCGACAAGCGCTTTCCGTCTTC
AGAGAGCTTTCTCTATGGTATGCCTTCCTCTCTCGTCATGTCCTTACCGTTTGAGTTGCC
TTCAGCTATGTTGTTTGATCCTCTGACCGGGAACGGAGAGGTTTCTTTGTTGTCAACGGT
GGAAGGGAAGTTTCTCCTGTAGACTGTCGCAATGGAGGATGAAAAGCTATCTTTTTTACG
TTTAACCGAGCAAGGAAAGGTTCTGTGTATATCTTGTTTCGTTATTGGAGGAAGGATAGT
TTCATGTACGGTTTATTGAAGGCTTCCCATGTTATTCCCCCTTAGGAGTTTCATTGGCTC
AGAAGTGCAGGTTTCAGCTAGAGCTTCTTTATATTGCTGATGGTTCAAGCTGTTTTGTGT
TAAACTTCTGTCTGCTTGGTGCCCGTCGAGGTTTGATAGTGACGAGGCCCTTTCTGGTGT
AGATATTTTTTAAGGCCATGGAAAGGTATTGGTAGATGGAAAGTGGTCCCAAGCAACCTC
CAGCCAGCCGCGTATTTGGGCGAGGTGTGTGTCTTT |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q54GS1 |
| Definition |
sp|Q54GS1|CL16A_DICDI Protein CLEC16A homolog OS=Dictyostelium discoideum |
| Align length |
145 |
| Score (bit) |
34.7 |
| E-value |
0.51 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950739|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_H20, 5'
(696 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q54GS1|CL16A_DICDI Protein CLEC16A homolog OS=Dictyostelium d... 35 0.51
sp|Q5NQ27|IF2_ZYMMO Translation initiation factor IF-2 OS=Zymomo... 34 0.66
sp|Q7TS99|HELT_MOUSE Hairy and enhancer of split-related protein... 34 0.66
sp|Q8CIE2|ZMIZ2_MOUSE Zinc finger MIZ domain-containing protein ... 33 1.1
sp|Q24206|BRC4_DROME Broad-complex core protein isoform 6 OS=Dro... 33 1.9
sp|Q01295|BRC1_DROME Broad-complex core protein isoforms 1/2/3/4... 33 1.9
sp|P03936|YAC9_MAIZE Transposable element activator uncharacteri... 31 5.5
sp|Q97EZ2|LACG_CLOAB 6-phospho-beta-galactosidase OS=Clostridium... 31 5.5
sp|B0BZB1|LGT_ACAM1 Prolipoprotein diacylglyceryl transferase OS... 31 5.6
sp|P06916|FIRA_PLAFF 300 kDa antigen AG231 (Fragment) OS=Plasmod... 31 7.2
sp|P37889|FBLN2_MOUSE Fibulin-2 OS=Mus musculus GN=Fbln2 PE=1 SV=1 31 7.2
sp|Q54Y98|TRA2B_DICDI Transformer-2-beta homolog OS=Dictyosteliu... 30 9.5
>sp|Q54GS1|CL16A_DICDI Protein CLEC16A homolog OS=Dictyostelium
discoideum GN=DDB_G0289943 PE=3 SV=1
Length = 1550
Score = 34.7 bits (78), Expect = 0.51
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 8/145 (5%)
Frame = -1
Query: 615 P*KISTPERASS---LSNLDGHQADRSLTQNSLNHQQYKEALAETCT-----SEPMKLLR 460
P ++ TP S+ L+N+ G + S N+ N+ T T S P KL +
Sbjct: 1274 PSRVITPIDTSNSHPLANILGSDDNISFVNNNNNNSNNNNTKKTTSTVNTPISTPHKLKK 1333
Query: 459 GNNMGSLQ*TVHETILPPITKQDIHRTFPCSVKRKKDSFSSSIATVYRRNFPSTVDNKET 280
GN S +++++ILP T +D R +V K D F++S F T+D KE
Sbjct: 1334 GNRGSSSNSSLNDSILP--TLEDHLRK---TVSPKVDMFNTSF-------FDDTLDLKE- 1380
Query: 279 SPFPVRGSNNIAEGNSNGKDMTREE 205
+ ++ + GN+N + E
Sbjct: 1381 ----LISTDELNNGNNNNNNEDNNE 1401
>sp|Q5NQ27|IF2_ZYMMO Translation initiation factor IF-2 OS=Zymomonas
mobilis GN=infB PE=3 SV=1
Length = 989
Score = 34.3 bits (77), Expect = 0.66
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = -2
Query: 326 QSTGETSLPPLTTKKPLRSRSEDQTT*LKATQTVRT*RERKAYHRESSLKTESACRLQER 147
+S G+ P + L SR E Q L+ + R +A RE LK E+ Q R
Sbjct: 194 RSGGQPRQPRTLAHRDLASRQELQARLLREAEESRLQALEEARRREDRLKQEADLEEQRR 253
Query: 146 VEEKKMASCHRLIES 102
+EEK+ +E+
Sbjct: 254 IEEKRRLEAEAKVEA 268
>sp|Q7TS99|HELT_MOUSE Hairy and enhancer of split-related protein
HELT OS=Mus musculus GN=Helt PE=1 SV=1
Length = 240
Score = 34.3 bits (77), Expect = 0.66
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Frame = +2
Query: 29 LSFSVHRARASMEPLAPPLKKSRPDFLSNGGNLPSSFPLHAPAGDKRFPSSE---SFLYG 199
L+F +AR EP PPL PDF FP H+P FP SF +
Sbjct: 118 LAFLQSKARLGAEPTFPPLSLPEPDFSYQLHAASPEFPGHSPGEATMFPQGATPGSFPWP 177
Query: 200 MPSSLVMSLPFELPSAMLFDPLTGNGEVSLLSTVEG 307
++ +LP+ L SA + P L+ ++G
Sbjct: 178 PGAARSPALPY-LSSATVPLPSPAQQHSPFLAPMQG 212
>sp|Q8CIE2|ZMIZ2_MOUSE Zinc finger MIZ domain-containing protein 2
OS=Mus musculus GN=Zmiz2 PE=2 SV=2
Length = 920
Score = 33.5 bits (75), Expect = 1.1
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 56 ASMEPLAPPLKKSRPDFLSNGGNL--PSSFPLHAPAGDKRFPSSESFLYGMPSSLVMSLP 229
A PL PP + D+ S G N P +FP P+ P+ F G P +S
Sbjct: 728 APFAPLQPPSAPTPSDYPSQGSNFMGPGTFPESFPSATPTTPNLAEFTQGPPP---ISYQ 784
Query: 230 FELPSAML 253
++PS++L
Sbjct: 785 SDIPSSLL 792
>sp|Q24206|BRC4_DROME Broad-complex core protein isoform 6
OS=Drosophila melanogaster GN=br PE=1 SV=2
Length = 880
Score = 32.7 bits (73), Expect = 1.9
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 8/167 (4%)
Frame = -1
Query: 585 SSLSNLDGHQADRSLTQNSLNHQQYKEALAETCTSEPMKLLRGN-NMGSLQ*TV------ 427
+++ +L H ++ L + ++ H+ A AE TS K LRG+ N L V
Sbjct: 178 TAVPSLPSHINNQLLKRMAMMHRSSAAAAAEE-TSHAFKRLRGSDNSLPLSGAVGSGSNN 236
Query: 426 HETILPPITKQDIHRTFPCSVKRKKDSFSSSIATVYRRNFPSTVDNKETSPFPVRGSNNI 247
+ LPP+ + S ++ FS+ I N P + K P G+ N
Sbjct: 237 NSPDLPPLHARS------ASPQQTPADFST-IKHHNNNNTPPLKEEKRNGP---TGNGNS 286
Query: 246 AEGNSNGKDMTREEGIP*RKLSEDGKRLSPAGACR-GKEDGKLPPFD 109
GN NG + GI +S+ L+P+ R G +D K P D
Sbjct: 287 GNGNGNGNGASNGNGI---SISDKLGSLTPSPLARAGADDVKSEPMD 330
>sp|Q01295|BRC1_DROME Broad-complex core protein isoforms 1/2/3/4/5
OS=Drosophila melanogaster GN=br PE=1 SV=2
Length = 727
Score = 32.7 bits (73), Expect = 1.9
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 8/167 (4%)
Frame = -1
Query: 585 SSLSNLDGHQADRSLTQNSLNHQQYKEALAETCTSEPMKLLRGN-NMGSLQ*TV------ 427
+++ +L H ++ L + ++ H+ A AE TS K LRG+ N L V
Sbjct: 178 TAVPSLPSHINNQLLKRMAMMHRSSAAAAAEE-TSHAFKRLRGSDNSLPLSGAVGSGSNN 236
Query: 426 HETILPPITKQDIHRTFPCSVKRKKDSFSSSIATVYRRNFPSTVDNKETSPFPVRGSNNI 247
+ LPP+ + S ++ FS+ I N P + K P G+ N
Sbjct: 237 NSPDLPPLHARS------ASPQQTPADFST-IKHHNNNNTPPLKEEKRNGP---TGNGNS 286
Query: 246 AEGNSNGKDMTREEGIP*RKLSEDGKRLSPAGACR-GKEDGKLPPFD 109
GN NG + GI +S+ L+P+ R G +D K P D
Sbjct: 287 GNGNGNGNGASNGNGI---SISDKLGSLTPSPLARAGADDVKSEPMD 330
>sp|P03936|YAC9_MAIZE Transposable element activator uncharacterized
23 kDa protein OS=Zea mays PE=4 SV=1
Length = 210
Score = 31.2 bits (69), Expect = 5.5
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 536 CVKLLSAWC-PSRFDSDEALSGVDIF*GHGKVLVDGKWSQATSSQPRI 676
CV LL WC P ++++ G+ G V++DG WS S P +
Sbjct: 153 CVMLLLVWCLPPGREAEQRSLGISYM-GWASVVMDGSWSWPYCSHPEL 199
>sp|Q97EZ2|LACG_CLOAB 6-phospho-beta-galactosidase OS=Clostridium
acetobutylicum GN=lacG PE=3 SV=1
Length = 474
Score = 31.2 bits (69), Expect = 5.5
Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Frame = +2
Query: 17 SRGGLSFSVHRARASMEPLAPPLKK----SRPDFLSNGGNLPSSFPLHAPAGDKRFPSSE 184
+R + + V A+ E L +KK + ++ G + +FP P+ P +
Sbjct: 130 NRNNIDYFVRFAKVCFEALGDRVKKWITFNEAWAVAQNGYIIGNFP---PSIKYDIPKAA 186
Query: 185 SFLYGMPSSLVMSLPFELPSAMLFDPLTGNGEVSLLSTVEGKFLL*TVAMEDEKLSFLRL 364
++ M + + EL +M D GE+ ++ T+EGK+ + T + ED++ ++L
Sbjct: 187 QSMHNM--MVAHAKVVELYKSMNLD-----GEIGIVHTLEGKYPI-TDSKEDKEAAYLDY 238
Query: 365 TEQGKVLCISCF 400
K + +CF
Sbjct: 239 MISNKFMLDACF 250
>sp|B0BZB1|LGT_ACAM1 Prolipoprotein diacylglyceryl transferase
OS=Acaryochloris marina (strain MBIC 11017) GN=lgt PE=3
SV=1
Length = 274
Score = 31.2 bits (69), Expect = 5.6
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 11/48 (22%)
Frame = +1
Query: 346 AIFFTFNRARKGSVYILF-------RYW----RKDSFMYGLLKASHVI 456
A+FF F +A+KG++++++ R W R DS M G L+ + V+
Sbjct: 198 ALFFKFPKAKKGTIFLVYAVTYSLGRLWIEGLRTDSLMLGPLRIAQVV 245
>sp|P06916|FIRA_PLAFF 300 kDa antigen AG231 (Fragment) OS=Plasmodium
falciparum (isolate FC27 / Papua New Guinea) GN=FIRA
PE=2 SV=1
Length = 310
Score = 30.8 bits (68), Expect = 7.2
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = -2
Query: 311 TSLPPLTTKKPLRSRSEDQTT*LKATQTVRT*RERKAYHRESSLKTESACRLQERVEEK 135
T+ P+TT++P+ ++ T L ATQ T +E + S S RL E EEK
Sbjct: 231 TAQEPITTQEPVTAQEPVTTQELIATQEPSTTQEHADEKKASEGDNISLSRLSEETEEK 289
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A1L1Q5 |
| Definition |
tr|A1L1Q5|A1L1Q5_DANRE Zgc:158248 OS=Danio rerio |
| Align length |
95 |
| Score (bit) |
35.8 |
| E-value |
2.7 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950739|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_H20, 5'
(696 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A1L1Q5|A1L1Q5_DANRE Zgc:158248 OS=Danio rerio GN=zgc:158248 P... 36 2.7
tr|B6KSV8|B6KSV8_TOXGO Transcriptional co-activator ADA2-A OS=To... 35 3.5
tr|A4FGJ4|A4FGJ4_SACEN Putative 5-methyltetrahydrofolate:homocys... 35 3.5
tr|Q7Q4P5|Q7Q4P5_ANOGA AGAP008512-PA (Fragment) OS=Anopheles gam... 35 6.0
tr|Q6FNG2|Q6FNG2_CANGA Similarities with uniprot|P08640 Saccharo... 35 6.0
tr|Q9GRH4|Q9GRH4_SPHGR CDC2L5 protein kinase OS=Sphaerechinus gr... 35 6.0
tr|Q8BRJ9|Q8BRJ9_MOUSE Putative uncharacterized protein OS=Mus m... 34 7.8
tr|Q178F9|Q178F9_AEDAE Putative uncharacterized protein OS=Aedes... 34 7.8
>tr|A1L1Q5|A1L1Q5_DANRE Zgc:158248 OS=Danio rerio GN=zgc:158248 PE=2
SV=1
Length = 1153
Score = 35.8 bits (81), Expect = 2.7
Identities = 34/95 (35%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Frame = +2
Query: 8 RKRSRGGLS----FSVHRARASMEPLAPPLKKSRPDFLSNGGNLPSSFPLHAPAGDKRFP 175
R+R GG S S RA A P P S+G NL S P P G
Sbjct: 1035 RQRQVGGASQVAKSSTSRASAMTLPSPPVSSHLSQGSPSSGSNLLGSVPPSLPLG----- 1089
Query: 176 SSESFLYGMPSSLV-MSLPFELPSAMLFDPLTGNG 277
+GM LV +SLPF+ PS + F P TG G
Sbjct: 1090 ------FGMLGGLVPVSLPFQFPSLLNFSP-TGPG 1117
>tr|B6KSV8|B6KSV8_TOXGO Transcriptional co-activator ADA2-A
OS=Toxoplasma gondii ME49 GN=TGME49_017050 PE=4 SV=1
Length = 1203
Score = 35.4 bits (80), Expect = 3.5
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Frame = +2
Query: 56 ASMEPLAPPLKKSRPDFL-----SNGGN----LPSSFPLHAPAGDKRFPSSESFLYGMPS 208
AS +P PP + FL S+GGN +PSSF P+ PSS +PS
Sbjct: 92 ASSKPTCPPENEKSSPFLGPPSDSSGGNATPSIPSSFSSSVPSS---LPSS------LPS 142
Query: 209 SLVMSLPFELPSA 247
SL SLP LPS+
Sbjct: 143 SLPSSLPPPLPSS 155
>tr|A4FGJ4|A4FGJ4_SACEN Putative
5-methyltetrahydrofolate:homocysteine
S-methyltransferase OS=Saccharopolyspora erythraea
(strain NRRL 23338) GN=metH PE=4 SV=1
Length = 1189
Score = 35.4 bits (80), Expect = 3.5
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = -1
Query: 213 REEGI-P*RKLSE--DGKRLSPAGACRGKEDGKLPPFDRKSGRDFFSGGARGSIEARALC 43
R EG P +KL E +G+ + A R +E KLP F+R R G R +EA
Sbjct: 607 RSEGYDPLQKLMELFEGQTAKSSSASRAEELAKLPLFERLEKR--IVDGERNGLEADLEA 664
Query: 42 TEKERPPLLLFRRN 1
+E+PPL + +N
Sbjct: 665 AMQEKPPLEIINQN 678
>tr|Q7Q4P5|Q7Q4P5_ANOGA AGAP008512-PA (Fragment) OS=Anopheles gambiae
GN=AGAP008512 PE=4 SV=4
Length = 2838
Score = 34.7 bits (78), Expect = 6.0
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = -2
Query: 368 RLNVKKIAFHPPLRQSTGETSLPPLTTKKPLRSRSEDQTT*LKATQTVRT*RERKAY 198
R++ K FHP S+ +SLPP +T P+ + + TT + T T T R Y
Sbjct: 2290 RMHDGKGYFHPSSSPSSSSSSLPPPSTSSPVTPTTTNATTTITTTTTTTTVRPPTTY 2346
>tr|Q6FNG2|Q6FNG2_CANGA Similarities with uniprot|P08640
Saccharomyces cerevisiae YIR019c STA1 OS=Candida
glabrata GN=CAGL0J11968g PE=4 SV=1
Length = 958
Score = 34.7 bits (78), Expect = 6.0
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +2
Query: 56 ASMEPLAPPLKKSRPDFLSN-GGNLPSSFPLHAPAG-DKRFPSS--ESFLYGMPSSLVMS 223
+S P + P +P +SN ++PSS P P+ PSS S MPSS+ S
Sbjct: 390 SSSMPSSMPSSVIKPSTVSNHSSSMPSSIPSSMPSSMPSSMPSSIPSSMPSSMPSSIPSS 449
Query: 224 LPFELPSAM 250
+P +PS+M
Sbjct: 450 IPSSIPSSM 458
Score = 34.3 bits (77), Expect = 7.8
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 119 GNLPSSFPLHAPAGDKRFPSS--ESFLYGMPSSLVMSLPFELPSAMLFDPLTGNGEVSLL 292
G++PSS P P+ PSS S +PSS+ S+P +PS+++ N S+
Sbjct: 464 GSMPSSIPSSMPSS---IPSSMPSSIPSSIPSSMPSSMPSSMPSSVIKPSTVSNHSSSMP 520
Query: 293 STVEG 307
S++ G
Sbjct: 521 SSIPG 525
>tr|Q9GRH4|Q9GRH4_SPHGR CDC2L5 protein kinase OS=Sphaerechinus
granularis GN=CDC2L5 PE=2 SV=1
Length = 1266
Score = 34.7 bits (78), Expect = 6.0
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -1
Query: 183 SEDGKRLSPAGACRGKEDGKLPPFDRKSGRDFFSGGARGS 64
S D L PAG +GK LP F+R GR F G RG+
Sbjct: 1215 SGDRGNLFPAGKSKGKNWAPLPSFNRGGGRGGFKGSHRGN 1254
>tr|Q8BRJ9|Q8BRJ9_MOUSE Putative uncharacterized protein OS=Mus
musculus GN=Helt PE=2 SV=1
Length = 202
Score = 34.3 bits (77), Expect = 7.8
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Frame = +2
Query: 29 LSFSVHRARASMEPLAPPLKKSRPDFLSNGGNLPSSFPLHAPAGDKRFPSSE---SFLYG 199
L+F +AR EP PPL PDF FP H+P FP SF +
Sbjct: 80 LAFLQSKARLGAEPTFPPLSLPEPDFSYQLHAASPEFPGHSPGEATMFPQGATPGSFPWP 139
Query: 200 MPSSLVMSLPFELPSAMLFDPLTGNGEVSLLSTVEG 307
++ +LP+ L SA + P L+ ++G
Sbjct: 140 PGAARSPALPY-LSSATVPLPSPAQQHSPFLAPMQG 174
>tr|Q178F9|Q178F9_AEDAE Putative uncharacterized protein OS=Aedes
aegypti GN=AAEL005916 PE=4 SV=1
Length = 561
Score = 34.3 bits (77), Expect = 7.8
Identities = 27/99 (27%), Positives = 44/99 (44%)
Frame = -2
Query: 383 EPFLARLNVKKIAFHPPLRQSTGETSLPPLTTKKPLRSRSEDQTT*LKATQTVRT*RERK 204
E FLA+ + + P Q + S PP+T K + +E QTT T ++ +E
Sbjct: 203 EVFLAQTSFSPFTYIPYYTQQSAPNSKPPVTIKTDDDNVTE-QTTIPIFTLATQSDQESP 261
Query: 203 AYHRESSLKTESACRLQERVEEKKMASCHRLIESLAATS 87
A E+S+ T + C + +E +C I S+ S
Sbjct: 262 ADTIEASVTTGTCCESPDTIEPAPGLTCAEYISSVQLAS 300
|