| DK950741 |
| Clone id |
TST38A01NGRL0009_H22 |
| Library |
TST38 |
| Length |
648 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_H22. 5' end sequence. |
| Accession |
DK950741 |
| Tissue type |
prothallia |
| Developmental stage |
gametophyte |
| Contig ID |
- |
| Sequence |
GTCTCGAGCCTGGGTTGGTTAAACGAGTTGTAGTTGTGAATAAAAAGGTCGCAAACGTGT
ACCTGAATGAGCAGCCTTCATTTGGGGCAGGATCTTCGGCCACAGTTCCTACCGATCAAC
CGCAATACTCCTTTCAGATTGGAAGTGTCGATTCTTTTGAGCGCAAGCTGGAGGAAGCTC
AGGAAGCTCTGGGAATTGATCCACATAATTACATTCCAGTTCTTTATGTGAAAGAACTAA
GCTGGATGCAAGAGCTCTGGCGTTTTTCTCCTACTATTATAATATTCTTAGGCTATCTGT
ATATCAGTCGCCGGTTGCAAAGTGGCCTTGGCATTGGTCAGGGAAGGGGTGGTTCAGGAC
TATTTAGTATGGGCAAAGCACACGTGACAGTACTGAACAAGGACTCTAAGAATAAGGTGT
TTTTCAAAGATGTTGCAGGATGTGATGAAGCAAAGCAAGAAATAATGGAGTTCGTGCACT
TCTTGAAGTGTCCCAAAAAGTATAAAGAGCTTGGTGCCAAGATTCCAAAAGGAGCACTCT
TAGTGGGGCCTCCAGGCACTGGGAAAACTCTTCTTGCCAAGGCCACTGCAGGCGAAGCTG
GTGTGCCTTTCTTGTCTATCAGTGGTGCTGAGTTTATAGAGATGTTTG |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q0DHL4 |
| Definition |
sp|Q0DHL4|FTSH8_ORYSJ Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica |
| Align length |
230 |
| Score (bit) |
235.0 |
| E-value |
1.0e-61 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950741|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_H22, 5'
(648 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q0DHL4|FTSH8_ORYSJ Cell division protease ftsH homolog 8, mit... 235 1e-61
sp|Q84WU8|FTSH3_ARATH Cell division protease ftsH homolog 3, mit... 223 5e-58
sp|Q8S2A7|FTSH3_ORYSJ Cell division protease ftsH homolog 3, mit... 220 4e-57
sp|Q8VZI8|FTSHA_ARATH Cell division protease ftsH homolog 10, mi... 212 1e-54
sp|Q9HGM3|RCA1_SCHPO Mitochondrial respiratory chain complexes a... 179 8e-45
sp|P40341|RCA1_YEAST Mitochondrial respiratory chain complexes a... 176 1e-43
sp|P39925|AFG3_YEAST Mitochondrial respiratory chain complexes a... 174 5e-43
sp|Q8JZQ2|AFG32_MOUSE AFG3-like protein 2 OS=Mus musculus GN=Afg... 160 4e-39
sp|Q9Y4W6|AFG32_HUMAN AFG3-like protein 2 OS=Homo sapiens GN=AFG... 160 4e-39
sp|Q2KJI7|AFG32_BOVIN AFG3-like protein 2 OS=Bos taurus GN=AFG3L... 160 4e-39
sp|Q920A7|AFG31_MOUSE AFG3-like protein 1 OS=Mus musculus GN=Afg... 154 3e-37
sp|P37476|FTSH_BACSU Cell division protease ftsH homolog OS=Baci... 126 1e-28
sp|P94304|FTSH_BACPF Cell division protease ftsH homolog OS=Baci... 125 2e-28
sp|Q9UQ90|SPG7_HUMAN Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2 122 1e-27
sp|Q7TT47|SPG7_RAT Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 ... 122 2e-27
sp|Q3ULF4|SPG7_MOUSE Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1 122 2e-27
sp|Q55700|FTSH1_SYNY3 Cell division protease ftsH homolog 1 OS=S... 121 3e-27
sp|Q68XR9|FTSH_RICTY Cell division protease ftsH homolog OS=Rick... 119 1e-26
sp|Q9ZEA2|FTSH_RICPR Cell division protease ftsH homolog OS=Rick... 119 1e-26
sp|Q4UN68|FTSH_RICFE Cell division protease ftsH homolog OS=Rick... 119 1e-26
sp|Q92JJ9|FTSH_RICCN Cell division protease ftsH homolog OS=Rick... 119 1e-26
sp|P73179|FTSH2_SYNY3 Cell division protease ftsH homolog 2 OS=S... 119 2e-26
sp|P71377|FTSH1_HAEIN Cell division protease ftsH homolog 1 OS=H... 119 2e-26
sp|Q1RGP0|FTSH_RICBR Cell division protease ftsH homolog OS=Rick... 118 2e-26
sp|O78516|FTSH_GUITH Cell division protease ftsH homolog OS=Guil... 118 2e-26
sp|Q1PDW5|FTSH6_ARATH Cell division protease ftsH homolog 6, chl... 118 2e-26
sp|O80860|FTSH2_ARATH Cell division protease ftsH homolog 2, chl... 118 2e-26
sp|O83746|FTSH_TREPA Cell division protease ftsH homolog OS=Trep... 117 4e-26
sp|Q8W585|FTSH8_ARATH Cell division protease ftsH homolog 8, chl... 117 4e-26
sp|P73437|FTSH3_SYNY3 Cell division protease ftsH homolog 3 OS=S... 117 4e-26
>sp|Q0DHL4|FTSH8_ORYSJ Cell division protease ftsH homolog 8,
mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8
PE=3 SV=1
Length = 822
Score = 235 bits (600), Expect = 1e-61
Identities = 130/230 (56%), Positives = 155/230 (67%), Gaps = 15/230 (6%)
Frame = +3
Query: 3 LEPGLXXXXXXXXXXXXXXYLNEQP---SFGAGSSATVPT-DQP--------QYSFQIGS 146
LEPGL Y+ P S G + A + T D P +Y F IGS
Sbjct: 180 LEPGLVDRIVVSNKSVAKVYVRSSPQSNSQGQNTDAIITTNDVPSKHTPSRYKYYFNIGS 239
Query: 147 VDSFERKLEEAQEALGIDPHNYIPVLYVKELSWMQELWRFSPTIIIFLGYLYISXXXXXX 326
VDSFE KLEEAQEALG+DPH+++PV YV E++W QE+ RF+PT+ + +G +Y+
Sbjct: 240 VDSFEEKLEEAQEALGVDPHDFVPVTYVAEVNWFQEVMRFAPTVFL-VGLIYLMSKRMQS 298
Query: 327 XXXXXXXXXXXXXXXX---KAHVTVLNKDSKNKVFFKDVAGCDEAKQEIMEFVHFLKCPK 497
KA VT ++K+SKNKVFFKDVAGCDEAKQEIMEFVHFLK PK
Sbjct: 299 GFNIGGGPGKGGRGIFNIGKAQVTKMDKNSKNKVFFKDVAGCDEAKQEIMEFVHFLKNPK 358
Query: 498 KYKELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGAEFIEMF 647
KY+ELGAKIPKGALLVGPPGTGKTLLAKATAGE+GVPFLSISG++F+EMF
Sbjct: 359 KYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF 408
>sp|Q84WU8|FTSH3_ARATH Cell division protease ftsH homolog 3,
mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1
Length = 809
Score = 223 bits (569), Expect = 5e-58
Identities = 123/227 (54%), Positives = 144/227 (63%), Gaps = 12/227 (5%)
Frame = +3
Query: 3 LEPGLXXXXXXXXXXXXXXYLNEQPSF----------GAGSSATVPTDQPQYSFQIGSVD 152
LEPGL Y+ P G G A Q +Y F IGSVD
Sbjct: 169 LEPGLVDHIDVSNKSVAKVYVRSTPKDQQTTDVVHGNGNGIPAKRTGGQYKYYFNIGSVD 228
Query: 153 SFERKLEEAQEALGIDPHNYIPVLYVKELSWMQELWRFSPTIIIFLGYLYISXXXXXXXX 332
SFE KLEEAQEALG+D H Y+PV YV E+ W QE RF+PT+++ +Y +
Sbjct: 229 SFEEKLEEAQEALGVDRHEYVPVTYVSEMVWYQEFMRFAPTLLLLGTLIYGARRMQGGLG 288
Query: 333 XXXXXXXXXXXXXX--KAHVTVLNKDSKNKVFFKDVAGCDEAKQEIMEFVHFLKCPKKYK 506
KA +T +K SKNK++FKDVAGCDEAKQEIMEFVHFLK PKKY+
Sbjct: 289 VGGTGGKNGRGIFNIGKATITRADKHSKNKIYFKDVAGCDEAKQEIMEFVHFLKNPKKYE 348
Query: 507 ELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGAEFIEMF 647
+LGAKIPKGALLVGPPGTGKTLLAKATAGE+GVPFLSISG++F+EMF
Sbjct: 349 DLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF 395
>sp|Q8S2A7|FTSH3_ORYSJ Cell division protease ftsH homolog 3,
mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3
PE=3 SV=1
Length = 802
Score = 220 bits (561), Expect = 4e-57
Identities = 121/229 (52%), Positives = 146/229 (63%), Gaps = 14/229 (6%)
Frame = +3
Query: 3 LEPGLXXXXXXXXXXXXXXYLNEQPSFGAGSSATVPT--------DQP---QYSFQIGSV 149
LEPGL Y+ PS + + + P +Y F IGSV
Sbjct: 166 LEPGLVDHIVVSNKSIAKVYVRSSPSIDRIQDSDIHITTSHLPGIESPSSYKYYFNIGSV 225
Query: 150 DSFERKLEEAQEALGIDPHNYIPVLYVKELSWMQELWRFSPTIIIFLGYLYI---SXXXX 320
DSFE KL+EAQ+AL IDPH Y+P+ Y E W +E+ ++ PT++I +G +Y+
Sbjct: 226 DSFEEKLQEAQKALEIDPHYYVPITYTTEAKWFEEVMKYVPTVLI-IGLIYLLGKRIQNG 284
Query: 321 XXXXXXXXXXXXXXXXXXKAHVTVLNKDSKNKVFFKDVAGCDEAKQEIMEFVHFLKCPKK 500
K VT L+K+SKNKVFFKDVAGCDEAKQEIMEFVHFLK PKK
Sbjct: 285 FTVGGGPGKGGRSIFSIGKVQVTKLDKNSKNKVFFKDVAGCDEAKQEIMEFVHFLKNPKK 344
Query: 501 YKELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGAEFIEMF 647
Y+ELGAKIPKGALLVGPPGTGKTLLAKATAGE+GVPFLSISG++F+EMF
Sbjct: 345 YEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF 393
>sp|Q8VZI8|FTSHA_ARATH Cell division protease ftsH homolog 10,
mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1
SV=1
Length = 813
Score = 212 bits (540), Expect = 1e-54
Identities = 109/191 (57%), Positives = 137/191 (71%), Gaps = 3/191 (1%)
Frame = +3
Query: 84 GAGSSATVPTDQPQYSFQIGSVDSFERKLEEAQEALGIDPHNYIPVLYVKELSWMQELWR 263
G G A Q +Y F IGSV+SFE KLEEAQEA+G++ H+++PV YV E W QEL R
Sbjct: 210 GNGVPAKGRGGQYKYYFNIGSVESFEEKLEEAQEAIGVNSHDFVPVTYVSETIWYQELLR 269
Query: 264 FSPTIIIFLGYLYIS---XXXXXXXXXXXXXXXXXXXXXXKAHVTVLNKDSKNKVFFKDV 434
F+PT+++ ++ + KA +T +K+SKNK++FKDV
Sbjct: 270 FAPTLLLVATLIFGARRMQGGLGGLGGPGGKAGRGIFNIGKAQITRADKNSKNKIYFKDV 329
Query: 435 AGCDEAKQEIMEFVHFLKCPKKYKELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFL 614
AGC+EAKQEIMEFVHFL+ PKKY++LGAKIPKGALLVGPPGTGKTLLAKATAGE+ VPFL
Sbjct: 330 AGCEEAKQEIMEFVHFLQNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESAVPFL 389
Query: 615 SISGAEFIEMF 647
SISG++F+EMF
Sbjct: 390 SISGSDFMEMF 400
>sp|Q9HGM3|RCA1_SCHPO Mitochondrial respiratory chain complexes
assembly protein rca1 OS=Schizosaccharomyces pombe
GN=SPBC543.09 PE=2 SV=1
Length = 773
Score = 179 bits (455), Expect = 8e-45
Identities = 95/181 (52%), Positives = 120/181 (66%)
Frame = +3
Query: 105 VPTDQPQYSFQIGSVDSFERKLEEAQEALGIDPHNYIPVLYVKELSWMQELWRFSPTIII 284
V + QY F IGS+DSF+RKLE+AQ LGI P ++PV Y E+S + L F+PT++I
Sbjct: 193 VASGSGQYYFSIGSIDSFDRKLEDAQRQLGIPPSEFVPVAYHDEVSVLATLLSFAPTLLI 252
Query: 285 FLGYLYISXXXXXXXXXXXXXXXXXXXXXXKAHVTVLNKDSKNKVFFKDVAGCDEAKQEI 464
+Y+S K+ + N ++ K+ F DVAG DEAK+EI
Sbjct: 253 IGSVIYLSRRASGAAGGGQGGIFGIG----KSRAKMFNHETDIKIKFADVAGVDEAKEEI 308
Query: 465 MEFVHFLKCPKKYKELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGAEFIEM 644
MEFV FLK PK Y+ LGAKIP+GA+L GPPGTGKTLLAKATAGEA VPFLS+SG+EF+EM
Sbjct: 309 MEFVKFLKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSVSGSEFLEM 368
Query: 645 F 647
F
Sbjct: 369 F 369
>sp|P40341|RCA1_YEAST Mitochondrial respiratory chain complexes
assembly protein RCA1 OS=Saccharomyces cerevisiae
GN=RCA1 PE=1 SV=2
Length = 825
Score = 176 bits (445), Expect = 1e-43
Identities = 89/174 (51%), Positives = 119/174 (68%)
Frame = +3
Query: 126 YSFQIGSVDSFERKLEEAQEALGIDPHNYIPVLYVKELSWMQELWRFSPTIIIFLGYLYI 305
Y F IGS+DSFE KL++AQ+ L ID IPVLYV+E +W + +++ PT+++ G +++
Sbjct: 252 YYFTIGSIDSFEHKLQKAQDELDIDKDFRIPVLYVQEGNWAKAMFQILPTVLMIAGIIWL 311
Query: 306 SXXXXXXXXXXXXXXXXXXXXXXKAHVTVLNKDSKNKVFFKDVAGCDEAKQEIMEFVHFL 485
+ K N ++ K+ FKDVAGCDEAK+EIMEFV FL
Sbjct: 312 TRRSAQAAGGSRGGIFGLSRSKAKK----FNTETDVKIKFKDVAGCDEAKEEIMEFVSFL 367
Query: 486 KCPKKYKELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGAEFIEMF 647
K P +Y+++GAKIP+GA+L GPPGTGKTLLAKATAGEAGVPF +SG+EF+EMF
Sbjct: 368 KEPSRYEKMGAKIPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEMF 421
>sp|P39925|AFG3_YEAST Mitochondrial respiratory chain complexes
assembly protein AFG3 OS=Saccharomyces cerevisiae
GN=AFG3 PE=1 SV=1
Length = 761
Score = 174 bits (440), Expect = 5e-43
Identities = 92/176 (52%), Positives = 117/176 (66%), Gaps = 3/176 (1%)
Frame = +3
Query: 129 SFQIGSVDSFERKLEEAQEALGIDPHNYIPVLYVKELSWMQELWRFSPTIIIFLGYLYIS 308
SF IGSVD FE ++++ Q+ L I P + IP+ Y++ S L+ F PTII+ G +I+
Sbjct: 186 SFTIGSVDIFEEQMDQIQDLLNIPPRDRIPIKYIERSSPFTFLFPFLPTIILLGGLYFIT 245
Query: 309 XXXXXXXXXXXXXXXXXXXXXX---KAHVTVLNKDSKNKVFFKDVAGCDEAKQEIMEFVH 479
K+ + NK++ K+ FK+VAGCDEAKQEIMEFVH
Sbjct: 246 RKINSSPPNANGGGGGGLGGMFNVGKSRAKLFNKETDIKISFKNVAGCDEAKQEIMEFVH 305
Query: 480 FLKCPKKYKELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGAEFIEMF 647
FLK P KY +LGAKIP+GA+L GPPGTGKTLLAKATAGEA VPFLS+SG+EF+EMF
Sbjct: 306 FLKNPGKYTKLGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSVSGSEFVEMF 361
>sp|Q8JZQ2|AFG32_MOUSE AFG3-like protein 2 OS=Mus musculus GN=Afg3l2
PE=1 SV=1
Length = 802
Score = 160 bits (406), Expect = 4e-39
Identities = 91/180 (50%), Positives = 115/180 (63%)
Frame = +3
Query: 108 PTDQPQYSFQIGSVDSFERKLEEAQEALGIDPHNYIPVLYVKELSWMQELWRFSPTIIIF 287
P D F IGSVD+FER LE Q+ LGI+ N +PV+Y+ E S L PT++I
Sbjct: 205 PVDGQYVWFNIGSVDTFERNLETLQQELGIEGENRVPVVYIAE-SDGSFLLSMLPTVLI- 262
Query: 288 LGYLYISXXXXXXXXXXXXXXXXXXXXXXKAHVTVLNKDSKNKVFFKDVAGCDEAKQEIM 467
+ +L + + VL + K FKDVAGC+EAK EIM
Sbjct: 263 IAFLLYTIRRGPAGIGRTGRGMGGLFSVGETTAKVLKDEIDVK--FKDVAGCEEAKLEIM 320
Query: 468 EFVHFLKCPKKYKELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGAEFIEMF 647
EFV+FLK PK+Y++LGAKIPKGA+L GPPGTGKTLLAKATAGEA VPF+++SG+EF+EMF
Sbjct: 321 EFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMF 380
>sp|Q9Y4W6|AFG32_HUMAN AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2
PE=1 SV=2
Length = 797
Score = 160 bits (406), Expect = 4e-39
Identities = 91/180 (50%), Positives = 115/180 (63%)
Frame = +3
Query: 108 PTDQPQYSFQIGSVDSFERKLEEAQEALGIDPHNYIPVLYVKELSWMQELWRFSPTIIIF 287
P D F IGSVD+FER LE Q+ LGI+ N +PV+Y+ E S L PT++I
Sbjct: 206 PVDGQYVWFNIGSVDTFERNLETLQQELGIEGENRVPVVYIAE-SDGSFLLSMLPTVLI- 263
Query: 288 LGYLYISXXXXXXXXXXXXXXXXXXXXXXKAHVTVLNKDSKNKVFFKDVAGCDEAKQEIM 467
+ +L + + VL + K FKDVAGC+EAK EIM
Sbjct: 264 IAFLLYTIRRGPAGIGRTGRGMGGLFSVGETTAKVLKDEIDVK--FKDVAGCEEAKLEIM 321
Query: 468 EFVHFLKCPKKYKELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGAEFIEMF 647
EFV+FLK PK+Y++LGAKIPKGA+L GPPGTGKTLLAKATAGEA VPF+++SG+EF+EMF
Sbjct: 322 EFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMF 381
>sp|Q2KJI7|AFG32_BOVIN AFG3-like protein 2 OS=Bos taurus GN=AFG3L2
PE=2 SV=1
Length = 805
Score = 160 bits (406), Expect = 4e-39
Identities = 91/180 (50%), Positives = 115/180 (63%)
Frame = +3
Query: 108 PTDQPQYSFQIGSVDSFERKLEEAQEALGIDPHNYIPVLYVKELSWMQELWRFSPTIIIF 287
P D F IGSVD+FER LE Q+ LGI+ N +PV+Y+ E S L PT++I
Sbjct: 207 PVDGQYVWFNIGSVDTFERNLETLQQELGIEGENRVPVVYIAE-SDGSFLLSMLPTVLI- 264
Query: 288 LGYLYISXXXXXXXXXXXXXXXXXXXXXXKAHVTVLNKDSKNKVFFKDVAGCDEAKQEIM 467
+ +L + + VL + K FKDVAGC+EAK EIM
Sbjct: 265 IAFLLYTIRRGPAGIGRTGRGMGGLFSVGETTAKVLKDEIDVK--FKDVAGCEEAKLEIM 322
Query: 468 EFVHFLKCPKKYKELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGAEFIEMF 647
EFV+FLK PK+Y++LGAKIPKGA+L GPPGTGKTLLAKATAGEA VPF+++SG+EF+EMF
Sbjct: 323 EFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMF 382
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
B8AYZ7 |
| Definition |
tr|B8AYZ7|B8AYZ7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica |
| Align length |
230 |
| Score (bit) |
235.0 |
| E-value |
2.0e-60 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950741|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_H22, 5'
(648 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|B8AYZ7|B8AYZ7_ORYSI Putative uncharacterized protein OS=Oryza... 235 2e-60
tr|A9TWG1|A9TWG1_PHYPA Predicted protein OS=Physcomitrella paten... 233 1e-59
tr|A9S0B6|A9S0B6_PHYPA Predicted protein OS=Physcomitrella paten... 232 2e-59
tr|A9U326|A9U326_PHYPA Predicted protein OS=Physcomitrella paten... 231 4e-59
tr|A7NYX4|A7NYX4_VITVI Chromosome chr6 scaffold_3, whole genome ... 230 6e-59
tr|Q94ES0|Q94ES0_PEA AAA-metalloprotease FtsH OS=Pisum sativum G... 227 4e-58
tr|A2WWW5|A2WWW5_ORYSI Putative uncharacterized protein OS=Oryza... 221 2e-56
tr|B7EQ63|B7EQ63_ORYSJ cDNA clone:J023056H19, full insert sequen... 220 5e-56
tr|Q00W41|Q00W41_OSTTA FtsH protease, putative (ISS) OS=Ostreoco... 202 2e-50
tr|A7PNP1|A7PNP1_VITVI Chromosome chr8 scaffold_23, whole genome... 201 2e-50
tr|Q6FRD6|Q6FRD6_CANGA Strain CBS138 chromosome H complete seque... 186 1e-45
tr|B3S6M8|B3S6M8_TRIAD Putative uncharacterized protein OS=Trich... 183 9e-45
tr|A7S706|A7S706_NEMVE Predicted protein OS=Nematostella vectens... 181 4e-44
tr|A7TRA2|A7TRA2_VANPO Putative uncharacterized protein OS=Vande... 180 8e-44
tr|B0CR17|B0CR17_LACBS Predicted protein OS=Laccaria bicolor (st... 179 1e-43
tr|A1CF64|A1CF64_ASPCL Mitochondrial inner membrane AAA protease... 177 6e-43
tr|Q6CK42|Q6CK42_KLULA KLLA0F13706p OS=Kluyveromyces lactis GN=K... 176 1e-42
tr|Q6B1I1|Q6B1I1_YEAST YMR089C OS=Saccharomyces cerevisiae GN=YT... 176 1e-42
tr|A8N2K1|A8N2K1_COPC7 Putative uncharacterized protein OS=Copri... 176 1e-42
tr|A6ZME6|A6ZME6_YEAS7 ATPase OS=Saccharomyces cerevisiae (strai... 176 1e-42
tr|Q75DQ8|Q75DQ8_ASHGO ABL041Wp OS=Ashbya gossypii GN=ABL041W PE... 175 2e-42
tr|B5VPL5|B5VPL5_YEAS6 YMR089Cp-like protein OS=Saccharomyces ce... 174 4e-42
tr|B3LLY0|B3LLY0_YEAS1 Putative uncharacterized protein OS=Sacch... 174 4e-42
tr|Q6CFY2|Q6CFY2_YARLI YALI0B02574p OS=Yarrowia lipolytica GN=YA... 174 5e-42
tr|B5VHE8|B5VHE8_YEAS6 YER017Cp-like protein (Fragment) OS=Sacch... 174 5e-42
tr|B3LS29|B3LS29_YEAS1 ATP dependent metalloprotease OS=Saccharo... 174 5e-42
tr|A6ZQW5|A6ZQW5_YEAS7 ATP dependent metalloprotease OS=Saccharo... 174 5e-42
tr|A1CYX0|A1CYX0_NEOFI Mitochondrial inner membrane AAA protease... 174 5e-42
tr|A8QA39|A8QA39_MALGO Putative uncharacterized protein OS=Malas... 173 9e-42
tr|Q75EQ4|Q75EQ4_ASHGO AAR025Cp OS=Ashbya gossypii GN=AAR025C PE... 172 1e-41
>tr|B8AYZ7|B8AYZ7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_20217 PE=4 SV=1
Length = 829
Score = 235 bits (600), Expect = 2e-60
Identities = 130/230 (56%), Positives = 155/230 (67%), Gaps = 15/230 (6%)
Frame = +3
Query: 3 LEPGLXXXXXXXXXXXXXXYLNEQP---SFGAGSSATVPT-DQP--------QYSFQIGS 146
LEPGL Y+ P S G + A + T D P +Y F IGS
Sbjct: 187 LEPGLVDRIVVSNKSVAKVYVRSSPQSNSQGQNTDAIITTNDVPSKHTPSRYKYYFNIGS 246
Query: 147 VDSFERKLEEAQEALGIDPHNYIPVLYVKELSWMQELWRFSPTIIIFLGYLYISXXXXXX 326
VDSFE KLEEAQEALG+DPH+++PV YV E++W QE+ RF+PT+ + +G +Y+
Sbjct: 247 VDSFEEKLEEAQEALGVDPHDFVPVTYVAEVNWFQEVMRFAPTVFL-VGLIYLMSKRMQS 305
Query: 327 XXXXXXXXXXXXXXXX---KAHVTVLNKDSKNKVFFKDVAGCDEAKQEIMEFVHFLKCPK 497
KA VT ++K+SKNKVFFKDVAGCDEAKQEIMEFVHFLK PK
Sbjct: 306 GFNIGGGPGKGGRGIFNIGKAQVTKMDKNSKNKVFFKDVAGCDEAKQEIMEFVHFLKNPK 365
Query: 498 KYKELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGAEFIEMF 647
KY+ELGAKIPKGALLVGPPGTGKTLLAKATAGE+GVPFLSISG++F+EMF
Sbjct: 366 KYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF 415
>tr|A9TWG1|A9TWG1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_172360 PE=4 SV=1
Length = 872
Score = 233 bits (593), Expect = 1e-59
Identities = 118/178 (66%), Positives = 135/178 (75%), Gaps = 3/178 (1%)
Frame = +3
Query: 123 QYSFQIGSVDSFERKLEEAQEALGIDPHNYIPVLYVKELSWMQELWRFSPTIIIFLGYLY 302
+Y F IGS+DSFERKLE+AQ+AL DPH+YIPV YV E+SW QEL R +PTI++ GY+Y
Sbjct: 267 KYYFNIGSIDSFERKLEDAQDALNADPHDYIPVTYVSEMSWQQELLRLAPTILLIAGYIY 326
Query: 303 ISXXXXXXXXXXXXXXXXXXXXXX---KAHVTVLNKDSKNKVFFKDVAGCDEAKQEIMEF 473
+ KA VT L+K K+KV FKDVAGCDEAKQEIMEF
Sbjct: 327 FTRRMQGGFGVGGGGGGMGGRGIFNVGKAQVTKLSKKQKDKVMFKDVAGCDEAKQEIMEF 386
Query: 474 VHFLKCPKKYKELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGAEFIEMF 647
VHFLK PKKY+ELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISG++F+EMF
Sbjct: 387 VHFLKNPKKYQELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFMEMF 444
>tr|A9S0B6|A9S0B6_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_180010 PE=4 SV=1
Length = 670
Score = 232 bits (591), Expect = 2e-59
Identities = 126/223 (56%), Positives = 147/223 (65%), Gaps = 8/223 (3%)
Frame = +3
Query: 3 LEPGLXXXXXXXXXXXXXXYLN----EQPSFGAGSSATVPTDQPQYSFQIGSVDSFERKL 170
LEPG+ Y+ E +GS + +Y F IGS+DSFERKL
Sbjct: 20 LEPGMVDRIEVTNKSFAKVYVKTGGFEDLRTDSGSQGSRSGSVYKYYFNIGSIDSFERKL 79
Query: 171 EEAQEALGIDPHNYIPVLYVKELSWMQELWRFSPTIIIFLGYLYISXXXXXXXXXXXXXX 350
E+AQ+AL DPH+YIPV YV ELSW EL R +PTI++ GY+Y +
Sbjct: 80 EDAQDALNTDPHDYIPVTYVSELSWQLELLRLAPTILLIAGYIYFTRRMQGGGFGMGGGS 139
Query: 351 XXXXXXXX----KAHVTVLNKDSKNKVFFKDVAGCDEAKQEIMEFVHFLKCPKKYKELGA 518
KA VT L+K+ K+KV FKDVAGCDEAKQEIMEFVHFLK PKKY+ELGA
Sbjct: 140 GGMGGRGIFNVGKAQVTKLSKNQKDKVMFKDVAGCDEAKQEIMEFVHFLKNPKKYQELGA 199
Query: 519 KIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGAEFIEMF 647
KIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISG++F+EMF
Sbjct: 200 KIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFMEMF 242
>tr|A9U326|A9U326_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_227865 PE=4 SV=1
Length = 693
Score = 231 bits (588), Expect = 4e-59
Identities = 118/178 (66%), Positives = 134/178 (75%), Gaps = 3/178 (1%)
Frame = +3
Query: 123 QYSFQIGSVDSFERKLEEAQEALGIDPHNYIPVLYVKELSWMQELWRFSPTIIIFLGYLY 302
+Y F IGS+DSFERKLE+AQ+AL DP +YIPV YV E+SW QEL R +PTI++ GY+Y
Sbjct: 88 KYYFNIGSIDSFERKLEDAQDALNADPRDYIPVTYVSEMSWQQELLRLAPTILLIAGYIY 147
Query: 303 ISXXXXXXXXXXXXXXXXXXXXXX---KAHVTVLNKDSKNKVFFKDVAGCDEAKQEIMEF 473
S KA VT L+K K+KV FKDVAGCDEAKQEIMEF
Sbjct: 148 FSRRMQGGFGVGGGGGGMGGRGIFNVGKAQVTKLSKKQKDKVMFKDVAGCDEAKQEIMEF 207
Query: 474 VHFLKCPKKYKELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGAEFIEMF 647
VHFLK PKKY+ELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISG++F+EMF
Sbjct: 208 VHFLKNPKKYQELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFMEMF 265
>tr|A7NYX4|A7NYX4_VITVI Chromosome chr6 scaffold_3, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00024289001
PE=4 SV=1
Length = 785
Score = 230 bits (586), Expect = 6e-59
Identities = 124/217 (57%), Positives = 146/217 (67%), Gaps = 2/217 (0%)
Frame = +3
Query: 3 LEPGLXXXXXXXXXXXXXXYLNEQPSFGAGSSATVPTDQPQYSFQIGSVDSFERKLEEAQ 182
LEPGL Y+ P A ++ Q ++ F IGSV+SFE KLEEAQ
Sbjct: 160 LEPGLVDHIVVSNKSVAKVYVRGSPLNQARNA------QYKFFFNIGSVESFEEKLEEAQ 213
Query: 183 EALGIDPHNYIPVLYVKELSWMQELWRFSPTIIIF--LGYLYISXXXXXXXXXXXXXXXX 356
E LGIDPHNY+PV YV E+ W QEL RF+PT+ + L Y+
Sbjct: 214 EVLGIDPHNYVPVTYVSEMVWYQELMRFAPTLALLGALWYMGRRMQSGLGVGGTGGRGGR 273
Query: 357 XXXXXXKAHVTVLNKDSKNKVFFKDVAGCDEAKQEIMEFVHFLKCPKKYKELGAKIPKGA 536
KAH+ ++K++KNKVFFKDVAGCDEAKQEIMEFVHFLK PKKY+ELGAKIPKGA
Sbjct: 274 GIFNIGKAHIMKVDKNAKNKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGA 333
Query: 537 LLVGPPGTGKTLLAKATAGEAGVPFLSISGAEFIEMF 647
LLVGPPGTGKTLLAKATAGE+ VPFLSISG++F+EMF
Sbjct: 334 LLVGPPGTGKTLLAKATAGESAVPFLSISGSDFMEMF 370
>tr|Q94ES0|Q94ES0_PEA AAA-metalloprotease FtsH OS=Pisum sativum
GN=FTSH PE=2 SV=1
Length = 810
Score = 227 bits (579), Expect = 4e-58
Identities = 124/225 (55%), Positives = 146/225 (64%), Gaps = 10/225 (4%)
Frame = +3
Query: 3 LEPGLXXXXXXXXXXXXXXYLNEQPSFGAGSS-------ATVPTDQPQYSFQIGSVDSFE 161
LEPGL Y+ P A S A + +Y F IGSV+SFE
Sbjct: 173 LEPGLVDHIVVSNKSVAKIYVRNSPRDQADSEVLQGNLPAKGSSGHYKYYFNIGSVESFE 232
Query: 162 RKLEEAQEALGIDPHNYIPVLYVKELSWMQELWRFSPTIIIFLGYLYISXXXXXXXXXXX 341
KLEE QE LG+DPH+ +PV Y EL W QEL RF+PT+++ LY+
Sbjct: 233 EKLEEVQETLGVDPHDNVPVTYSSELVWYQELMRFAPTLLLLGTLLYMGRRMQGGFGVGG 292
Query: 342 XXXXXXXXXXX---KAHVTVLNKDSKNKVFFKDVAGCDEAKQEIMEFVHFLKCPKKYKEL 512
KAHVT ++K++KNKV+FKDVAGCDEAKQEIMEFVHFLK PKKY+EL
Sbjct: 293 GGGGKGARGIFNIGKAHVTKVDKNAKNKVYFKDVAGCDEAKQEIMEFVHFLKNPKKYEEL 352
Query: 513 GAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGAEFIEMF 647
GAKIPKGALLVGPPGTGKTLLAKATAGE+GVPFLSISG++F+EMF
Sbjct: 353 GAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF 397
>tr|A2WWW5|A2WWW5_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_04395 PE=4 SV=1
Length = 802
Score = 221 bits (564), Expect = 2e-56
Identities = 121/229 (52%), Positives = 147/229 (64%), Gaps = 14/229 (6%)
Frame = +3
Query: 3 LEPGLXXXXXXXXXXXXXXYLNEQPSFGAGSSATVPT--------DQP---QYSFQIGSV 149
LEPGL Y+ PS + + + P +Y F IGSV
Sbjct: 166 LEPGLVDHIVVSNKSIAKVYVRSSPSIDRIQDSDIHITTSHLPGIESPSSYKYYFNIGSV 225
Query: 150 DSFERKLEEAQEALGIDPHNYIPVLYVKELSWMQELWRFSPTIIIFLGYLYI---SXXXX 320
DSFE KL+EAQ+AL IDPH Y+P++Y E W +E+ ++ PT++I +G +Y+
Sbjct: 226 DSFEEKLQEAQKALEIDPHYYVPIIYTTEAKWFEEVMKYVPTVLI-IGLIYLLGKRIQNG 284
Query: 321 XXXXXXXXXXXXXXXXXXKAHVTVLNKDSKNKVFFKDVAGCDEAKQEIMEFVHFLKCPKK 500
K VT L+K+SKNKVFFKDVAGCDEAKQEIMEFVHFLK PKK
Sbjct: 285 FTVGGGPGKGGRSIFSIGKVQVTKLDKNSKNKVFFKDVAGCDEAKQEIMEFVHFLKNPKK 344
Query: 501 YKELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGAEFIEMF 647
Y+ELGAKIPKGALLVGPPGTGKTLLAKATAGE+GVPFLSISG++F+EMF
Sbjct: 345 YEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF 393
>tr|B7EQ63|B7EQ63_ORYSJ cDNA clone:J023056H19, full insert sequence
OS=Oryza sativa subsp. japonica PE=2 SV=1
Length = 802
Score = 220 bits (561), Expect = 5e-56
Identities = 121/229 (52%), Positives = 146/229 (63%), Gaps = 14/229 (6%)
Frame = +3
Query: 3 LEPGLXXXXXXXXXXXXXXYLNEQPSFGAGSSATVPT--------DQP---QYSFQIGSV 149
LEPGL Y+ PS + + + P +Y F IGSV
Sbjct: 166 LEPGLVDHIVVSNKSIAKVYVRSSPSIDRIQDSDIHITTSHLPGIESPSSYKYYFNIGSV 225
Query: 150 DSFERKLEEAQEALGIDPHNYIPVLYVKELSWMQELWRFSPTIIIFLGYLYI---SXXXX 320
DSFE KL+EAQ+AL IDPH Y+P+ Y E W +E+ ++ PT++I +G +Y+
Sbjct: 226 DSFEEKLQEAQKALEIDPHYYVPITYTTEAKWFEEVMKYVPTVLI-IGLIYLLGKRIQNG 284
Query: 321 XXXXXXXXXXXXXXXXXXKAHVTVLNKDSKNKVFFKDVAGCDEAKQEIMEFVHFLKCPKK 500
K VT L+K+SKNKVFFKDVAGCDEAKQEIMEFVHFLK PKK
Sbjct: 285 FTVGGGPGKGGRSIFSIGKVQVTKLDKNSKNKVFFKDVAGCDEAKQEIMEFVHFLKNPKK 344
Query: 501 YKELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGAEFIEMF 647
Y+ELGAKIPKGALLVGPPGTGKTLLAKATAGE+GVPFLSISG++F+EMF
Sbjct: 345 YEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMF 393
>tr|Q00W41|Q00W41_OSTTA FtsH protease, putative (ISS)
OS=Ostreococcus tauri GN=Ot14g01710 PE=4 SV=1
Length = 809
Score = 202 bits (513), Expect = 2e-50
Identities = 103/177 (58%), Positives = 129/177 (72%), Gaps = 2/177 (1%)
Frame = +3
Query: 123 QYSFQIGSVDSFERKLEEAQEALGIDPHNYIPVLYVKELSWMQELWRFSPTIIIFLGYLY 302
++ F IGS+DSFERKLEEAQE +G++ +++ V YV E+ W EL R PT+++ G+LY
Sbjct: 216 KFYFNIGSLDSFERKLEEAQELIGLESKDFVSVTYVNEIFWQTELMRLLPTLLLIGGWLY 275
Query: 303 ISXXXXXXXXXXXXXXXXXXXXXX--KAHVTVLNKDSKNKVFFKDVAGCDEAKQEIMEFV 476
+ KA V+ L+K++KNK+ FKDVAGC+EAK+EIMEFV
Sbjct: 276 FTRRSAGMGGMGMGGGGGPGGIFNVGKATVSTLDKNAKNKIMFKDVAGCNEAKREIMEFV 335
Query: 477 HFLKCPKKYKELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSISGAEFIEMF 647
FLK PKKY+ LGAKIP GALLVGPPGTGKTLLAKATAGEAGVPFLSISG++F+EMF
Sbjct: 336 DFLKNPKKYEALGAKIPHGALLVGPPGTGKTLLAKATAGEAGVPFLSISGSDFMEMF 392
>tr|A7PNP1|A7PNP1_VITVI Chromosome chr8 scaffold_23, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00021336001
PE=4 SV=1
Length = 616
Score = 201 bits (512), Expect = 2e-50
Identities = 109/188 (57%), Positives = 130/188 (69%), Gaps = 2/188 (1%)
Frame = +3
Query: 90 GSSATVPTDQPQYSFQIGSVDSFERKLEEAQEALGIDPHNYIPVLYVKELSWMQELWRFS 269
G+ A Q +Y F IGSV+SFE KLEEAQE LGIDPHNY+PV YV E++W QEL++
Sbjct: 112 GTLARGNMGQYRYYFNIGSVESFEEKLEEAQETLGIDPHNYVPVTYVSEMNWFQELFKLV 171
Query: 270 PTIIIF--LGYLYISXXXXXXXXXXXXXXXXXXXXXXKAHVTVLNKDSKNKVFFKDVAGC 443
P ++ L Y+ KAH+ L+K+SKNKV+FKD
Sbjct: 172 PLALLVGSLWYMRQRIQQGGLGVGGTGGRGRGIFNIGKAHIAKLDKNSKNKVYFKD---- 227
Query: 444 DEAKQEIMEFVHFLKCPKKYKELGAKIPKGALLVGPPGTGKTLLAKATAGEAGVPFLSIS 623
AKQEIMEFVHFLK PKKY+ELGAKIPKGALLVGPPGTGKTLLAKATAG++ V FLSIS
Sbjct: 228 --AKQEIMEFVHFLKKPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGKSDVLFLSIS 285
Query: 624 GAEFIEMF 647
G++F+EMF
Sbjct: 286 GSDFMEMF 293
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