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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950749
Clone id TST38A01NGRL0009_I06
Library
Length 661
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_I06. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
AGGGCCTCTAATAATAATCATGTCAACTAGCTTTGCTTTACCCACAGTCTACAGATGCAG
GTTTCTCATCTAATAAGATTCCCTGTGAATTTATACAGGCCTAAGACCAAACAGATTAAA
CTATTGCTCATGTTATAATCTTCATCTGCATTGAATCCATGCCTCTCCTCTTTGTTTCTT
CAATATAATTATAGAGCCTCCTCTCTCATTATGTATTTCCCTACCTGTAATTATTCCAAT
AGATTAATAGAGAGATTAGATACACAGTACATGCATTTATTCTTTAATTTTAATCAATAT
TCTGTGTATAAATGGTGTCCCCTTCACCTCGACCTCAATAAGTCAGCTTTGTCATCTGCC
TCCACATCCTGATTGTTGGCAATATTCTCTTTCTTGTCACCTTCTCTGCTCTCTTCTGTG
GGCTACTTGCTCACTTGATTTTGCTCCCTACAATATCCAAGCCGGCCCTCGCAACACCAC
CATGAAGGAGGTAGCATCTCCGGCCGATCCACGCGCTTTCTTGCAGGCCCTGGGCGCCAG
GCCCGACCCCTCGGCTGTCCAAACCGCCCAGCTTATGCTCTTGCACCTCGAATCGGACCT
CTCCTCAAAGTTGGCATCCCTCTCTAACTCTCCNGACCAGGCTGAAGAGGTGGCCAAGTT
A
■■Homology search results ■■ -
sp_hit_id Q0RDS4
Definition sp|Q0RDS4|IF2_FRAAA Translation initiation factor IF-2 OS=Frankia alni (strain ACN14a)
Align length 53
Score (bit) 34.3
E-value 0.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950749|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_I06, 5'
         (661 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0RDS4|IF2_FRAAA Translation initiation factor IF-2 OS=Franki...    34   0.60 
sp|Q82EU4|SPEE_STRAW Probable spermidine synthase OS=Streptomyce...    33   1.3  
sp|A6L2R5|ARAA_BACV8 L-arabinose isomerase OS=Bacteroides vulgat...    32   2.3  
sp|A5PL33|KRBA1_HUMAN Protein KRBA1 OS=Homo sapiens GN=KRBA1 PE=...    32   3.9  
sp|Q8AAW1|ARAA_BACTN L-arabinose isomerase OS=Bacteroides thetai...    31   5.1  
sp|A8EZ14|MURG_RICCK UDP-N-acetylglucosamine--N-acetylmuramyl-(p...    31   6.6  
sp|Q24R48|3MGH_DESHY Putative 3-methyladenine DNA glycosylase OS...    31   6.7  

>sp|Q0RDS4|IF2_FRAAA Translation initiation factor IF-2 OS=Frankia
           alni (strain ACN14a) GN=infB PE=3 SV=1
          Length = 1021

 Score = 34.3 bits (77), Expect = 0.60
 Identities = 25/53 (47%), Positives = 26/53 (49%)
 Frame = +1

Query: 484 EGGSISGRSTRFLAGPGRQARPLGCPNRPAYALAPRIGPLLKVGIPL*LSXPG 642
           EGGS SG       GPG  ARP   P RP   LAPR GP    G P   + PG
Sbjct: 54  EGGSASGGRPGGRPGPGNGARP--APPRP--GLAPRPGPRPVPGRPGPAARPG 102


>sp|Q82EU4|SPEE_STRAW Probable spermidine synthase OS=Streptomyces
           avermitilis GN=speE PE=3 SV=1
          Length = 548

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +1

Query: 496 ISGRSTRFLAGPGRQARPLGCPNRPAYALAPRIGPLLKVG 615
           + GR T F AGP R       P    + LA R GP L +G
Sbjct: 468 VGGRDTGFAAGPDRSTDASRAPRDWGFVLASRTGPALSLG 507


>sp|A6L2R5|ARAA_BACV8 L-arabinose isomerase OS=Bacteroides vulgatus
           (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=araA PE=3
           SV=1
          Length = 509

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -2

Query: 654 ATSSAWSGELERDANFEERSDSRCKSISWAVWTAEGSGLAPRACKKARGSAGDATSF 484
           A  + +  E + DA+ E++S    +     VW A  + LA RA  KA+G+ G  T+F
Sbjct: 229 ALVATYFNEYDHDASLEDKSTEAYQK----VWNAAKAELALRAILKAKGAKGFTTNF 281


>sp|A5PL33|KRBA1_HUMAN Protein KRBA1 OS=Homo sapiens GN=KRBA1 PE=2
           SV=2
          Length = 1030

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 516 LSCRPWAPGPTPRLSKPPSLCSCTSNRTSPQSWHPSLTLXTRLKRWPS 659
           LSC P  P   P L+  P+  SC+S  T        L + T  K WP+
Sbjct: 117 LSCLPDGPTSQPHLATTPTDSSCSSGPTGDGVQGSPLPIKTADKPWPT 164


>sp|Q8AAW1|ARAA_BACTN L-arabinose isomerase OS=Bacteroides
           thetaiotaomicron GN=araA PE=3 SV=1
          Length = 509

 Score = 31.2 bits (69), Expect = 5.1
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -2

Query: 654 ATSSAWSGELERDANFEERSDSRCKSISWAVWTAEGSGLAPRACKKARGSAGDATSF 484
           A  + +  + + DA+ E++S    +     VW A  + LA RA  KA+G+ G  T+F
Sbjct: 229 ALVATYFNDYDHDASLEDKSTEAYQK----VWNAAKAELALRAILKAKGAKGFTTNF 281


>sp|A8EZ14|MURG_RICCK
           UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase OS=Rickettsia canadensis (strain McKiel)
           GN=murG PE=3 SV=1
          Length = 354

 Score = 30.8 bits (68), Expect = 6.6
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -3

Query: 479 WCCEGRLGYCREQNQVSK*PTEESREGDKKENIANNQDVEADDKADLLRSR*RGHHL 309
           W  + + G+C EQN +S       +  DK  ++ +N  +  D   +LL+ R  GH L
Sbjct: 294 WLEDTKAGWCLEQNNIS-----AGKLADKILDLISNTKILEDASHNLLKRRKEGHKL 345


>sp|Q24R48|3MGH_DESHY Putative 3-methyladenine DNA glycosylase
           OS=Desulfitobacterium hafniense (strain Y51) GN=DSY3705
           PE=3 SV=1
          Length = 203

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 24/81 (29%), Positives = 35/81 (43%)
 Frame = -1

Query: 625 REGCQL*GEVRFEVQEHKLGGLDSRGVGPGAQGLQESAWIGRRCYLLHGGVARAGLDIVG 446
           REG +L  + RF+   H+L      G+  G          G+ C  L    +  G D+ G
Sbjct: 106 REGSELMAQNRFKKSYHQLNKSQILGLTNGP---------GKLCRALSIDKSLNGEDLCG 156

Query: 445 SKIK*ASSPQKRAEKVTRKRI 383
           SK+  A   Q+    VT KR+
Sbjct: 157 SKLYVAEESQESLSIVTAKRV 177
tr_hit_id B8MC44
Definition tr|B8MC44|B8MC44_9EURO C2H2 zinc finger protein OS=Talaromyces stipitatus ATCC 10500
Align length 60
Score (bit) 34.3
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950749|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_I06, 5'
         (661 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8MC44|B8MC44_9EURO C2H2 zinc finger protein OS=Talaromyces s...    34   7.1  
tr|Q8CIA2|Q8CIA2_MOUSE Muc2 protein OS=Mus musculus GN=Muc2 PE=2...    34   9.1  
tr|Q80Z17|Q80Z17_MOUSE Muc2 protein (Fragment) OS=Mus musculus G...    34   9.1  
tr|Q17S18|Q17S18_MOUSE Muc2 protein (Fragment) OS=Mus musculus G...    34   9.1  
tr|Q0P637|Q0P637_MOUSE Muc2 protein (Fragment) OS=Mus musculus G...    34   9.1  
tr|Q0P623|Q0P623_MOUSE Muc2 protein (Fragment) OS=Mus musculus G...    34   9.1  
tr|Q0P622|Q0P622_MOUSE Muc2 protein (Fragment) OS=Mus musculus G...    34   9.1  
tr|Q8VX79|Q8VX79_PINPS Putative uncharacterized protein (Fragmen...    34   9.2  

>tr|B8MC44|B8MC44_9EURO C2H2 zinc finger protein OS=Talaromyces
           stipitatus ATCC 10500 GN=TSTA_122260 PE=4 SV=1
          Length = 819

 Score = 34.3 bits (77), Expect = 7.1
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
 Frame = +1

Query: 448 LQYPSRPSQHHHEGGSISGRSTRFLAGPGRQARPLGC--------PNRPAYALAPRIGPL 603
           LQY + PSQ+  +G   SG+S +FL  P    RPL          P  PA +L P   P+
Sbjct: 164 LQY-TPPSQNTEDGNQSSGKSAQFLTVPTVSGRPLSAHSENGHLPPLSPAQSLPPPTSPI 222


>tr|Q8CIA2|Q8CIA2_MOUSE Muc2 protein OS=Mus musculus GN=Muc2 PE=2
           SV=1
          Length = 938

 Score = 33.9 bits (76), Expect = 9.1
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +3

Query: 528 PWAPGPTPRLSKPPSLCSCTSNRTSPQSWHPSLTLXTRLKRWP 656
           P  P PTP  +  PS  S  S  ++PQS  P  TL T  K  P
Sbjct: 130 PSTPTPTPSQTTTPSTTSSKSTPSTPQSTSPKSTLSTPTKTTP 172


>tr|Q80Z17|Q80Z17_MOUSE Muc2 protein (Fragment) OS=Mus musculus
           GN=Muc2 PE=2 SV=1
          Length = 922

 Score = 33.9 bits (76), Expect = 9.1
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +3

Query: 528 PWAPGPTPRLSKPPSLCSCTSNRTSPQSWHPSLTLXTRLKRWP 656
           P  P PTP  +  PS  S  S  ++PQS  P  TL T  K  P
Sbjct: 114 PSTPTPTPSQTTTPSTTSSKSTPSTPQSTSPKSTLSTPTKTTP 156


>tr|Q17S18|Q17S18_MOUSE Muc2 protein (Fragment) OS=Mus musculus
           GN=Muc2 PE=2 SV=1
          Length = 1009

 Score = 33.9 bits (76), Expect = 9.1
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +3

Query: 528 PWAPGPTPRLSKPPSLCSCTSNRTSPQSWHPSLTLXTRLKRWP 656
           P  P PTP  +  PS  S  S  ++PQS  P  TL T  K  P
Sbjct: 201 PSTPTPTPSQTTTPSTTSSKSTPSTPQSTSPKSTLSTPTKTTP 243


>tr|Q0P637|Q0P637_MOUSE Muc2 protein (Fragment) OS=Mus musculus
           GN=Muc2 PE=2 SV=1
          Length = 886

 Score = 33.9 bits (76), Expect = 9.1
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +3

Query: 528 PWAPGPTPRLSKPPSLCSCTSNRTSPQSWHPSLTLXTRLKRWP 656
           P  P PTP  +  PS  S  S  ++PQS  P  TL T  K  P
Sbjct: 78  PSTPTPTPSQTTTPSTTSSKSTPSTPQSTSPKSTLSTPTKTTP 120


>tr|Q0P623|Q0P623_MOUSE Muc2 protein (Fragment) OS=Mus musculus
           GN=Muc2 PE=2 SV=1
          Length = 996

 Score = 33.9 bits (76), Expect = 9.1
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +3

Query: 528 PWAPGPTPRLSKPPSLCSCTSNRTSPQSWHPSLTLXTRLKRWP 656
           P  P PTP  +  PS  S  S  ++PQS  P  TL T  K  P
Sbjct: 188 PSTPTPTPSQTTTPSTTSSKSTPSTPQSTSPKSTLSTPTKTTP 230


>tr|Q0P622|Q0P622_MOUSE Muc2 protein (Fragment) OS=Mus musculus
           GN=Muc2 PE=2 SV=1
          Length = 958

 Score = 33.9 bits (76), Expect = 9.1
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +3

Query: 528 PWAPGPTPRLSKPPSLCSCTSNRTSPQSWHPSLTLXTRLKRWP 656
           P  P PTP  +  PS  S  S  ++PQS  P  TL T  K  P
Sbjct: 150 PSTPTPTPSQTTTPSTTSSKSTPSTPQSTSPKSTLSTPTKTTP 192


>tr|Q8VX79|Q8VX79_PINPS Putative uncharacterized protein (Fragment)
           OS=Pinus pinaster PE=2 SV=1
          Length = 90

 Score = 33.9 bits (76), Expect = 9.2
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +2

Query: 491 VASPADPRAFLQALGARPDPSAVQTAQLMLLHLESDLSSKLASLS 625
           V+     R+ LQ+LG RPD  AV  A+  +  +E +LSS+L  ++
Sbjct: 12  VSDVMQTRSVLQSLGDRPDHEAVDEARRRVAEIERNLSSRLEEIA 56