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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950764
Clone id TST38A01NGRL0009_I23
Library
Length 673
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_I23. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
CACATAAATCCATCAAGTATATCGCGTCACAAGGCTTTTGTGTCAGTCCGATGAAGATCC
AAGAGCACGGAAATAGGATGCCTGGCTCTCTGTGTTCAAACGATGCACTCTTGTTCTATC
AACATTCTTGCAGCAGTGCTGGGCCTTCTAGCGTACATATTTCGGAAAATGTCCTCTGTT
TTAAAGCAGTTGACGTGGTTGAATGCCCACAATGCAGCATCAAGCAGGACACAAGCCAAT
CATGTAGCTGCCCAGTTAGCACTTCATGTTTGCTCCCATTATTAAGTTCTGGAGAGGCAT
TTATTGGCATGAGAATAAAGCAATCAAGTGTAAAGCATTGTCGTGATGCGCCAAATGATC
CTATTTGTGAGCGTAACCCGGTATTTGTTGGAGATGTAAGAGTCTTTTCAAACAGCCTGC
AGCTGACTAACTACTGGCCACAGCAAATTGGGGATTTTGGCTTCTGTTTCATGCTGTTTC
GGCACCTTGAAAGCCTTCTTACGTACACCTTCTCTCTGTCAGCCGCAATGGCCCTGCTCA
ATAGTGCCCTGGTATTTTATCTTGATGGAGAGCAAATTTTCCAAGCCGGGCTCGTCTTGA
ACAAGTCATGGGTTCCCCCCAAGAGACATGCGAAGATCATGCGCACTGTGCTTACTTTAG
GAACAATTCTCAT
■■Homology search results ■■ -
sp_hit_id Q5IJ48
Definition sp|Q5IJ48|CRUM2_HUMAN Crumbs homolog 2 OS=Homo sapiens
Align length 70
Score (bit) 33.5
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950764|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_I23, 5'
         (673 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5IJ48|CRUM2_HUMAN Crumbs homolog 2 OS=Homo sapiens GN=CRB2 P...    33   1.0  
sp|P09837|WAP_CAMDR Whey acidic protein OS=Camelus dromedarius G...    31   5.2  
sp|Q9ERS8|SEBOX_RAT Homeobox protein SEBOX OS=Rattus norvegicus ...    31   6.8  
sp|Q8VIK5|PEAR1_MOUSE Platelet endothelial aggregation receptor ...    31   6.8  
sp|Q0D5P3|FH11_ORYSJ Formin-like protein 11 OS=Oryza sativa subs...    30   8.9  

>sp|Q5IJ48|CRUM2_HUMAN Crumbs homolog 2 OS=Homo sapiens GN=CRB2 PE=1
           SV=2
          Length = 1285

 Score = 33.5 bits (75), Expect = 1.0
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
 Frame = +3

Query: 195 VVECPQ------CSIKQDTSQSCSCPVSTSCLLPLLSSGEAFIGMRIKQSSVKHCRDAPN 356
           +  CP+      CS++    Q  +CP++ +C +P+  SG          S V HC    +
Sbjct: 381 ICRCPETWGGRDCSVQLTGCQGHTCPLAATC-IPIFESG--------VHSYVCHCPPGTH 431

Query: 357 DPICERNPVF 386
            P C +N  F
Sbjct: 432 GPFCGQNTTF 441


>sp|P09837|WAP_CAMDR Whey acidic protein OS=Camelus dromedarius
           GN=WAP PE=1 SV=1
          Length = 117

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
 Frame = +3

Query: 165 ENVLCFKAVDVVECPQ---CSIKQDTSQSCSCPVSTSCLLPLLSSGEA-FIGMRIKQSSV 332
           +N      V+   CPQ   C  +   S+SC+ P+  S   P+L  G   ++   +   + 
Sbjct: 21  DNACIISCVNDESCPQGTKCCARSPCSRSCTVPLMVSSPEPVLKDGRCPWVQTPL---TA 77

Query: 333 KHC---RDAPNDPICERN 377
           KHC    D   D  CE N
Sbjct: 78  KHCLEKNDCSRDDQCEGN 95


>sp|Q9ERS8|SEBOX_RAT Homeobox protein SEBOX OS=Rattus norvegicus
           GN=Sebox PE=2 SV=1
          Length = 188

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 237 QSCSCPVSTSCLLPLLSSGEAFIGMR 314
           Q+ +CP  TSCL P+L  G+++ G +
Sbjct: 119 QTSACPPQTSCLAPILGPGQSWSGAK 144


>sp|Q8VIK5|PEAR1_MOUSE Platelet endothelial aggregation receptor 1
           OS=Mus musculus GN=Pear1 PE=1 SV=1
          Length = 1034

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
 Frame = +3

Query: 138 AGPSSVHISENVLCFKAVDVVECPQC------SIKQDTSQSCSCPVSTSCLLPLLSSGEA 299
           AGPS      NV C +  D   CP+        + Q +  SCSCP     ++  L   E 
Sbjct: 210 AGPSC-----NVPCSQGTDGFFCPRTYPCQNGGVPQGSQGSCSCPPGWMGVICSLPCPEG 264

Query: 300 FIGMRIKQSSVKHCRDAPNDPICER-------NPVFVGD 395
           F G    Q     CR   N  +C+R        P ++GD
Sbjct: 265 FHGPNCTQ----ECR-CHNGGLCDRFTGQCHCAPGYIGD 298


>sp|Q0D5P3|FH11_ORYSJ Formin-like protein 11 OS=Oryza sativa subsp.
           japonica GN=FH11 PE=2 SV=1
          Length = 929

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -1

Query: 508 VYVRRLSRCRNSMKQKPKSPICCGQ*LVSCRLFEKTLTSPTNTGLRSQIGSFGASRQCFT 329
           +++  L    +++KQ   +     Q L + RLF K L +   TG R  +G+F    Q F 
Sbjct: 629 LFMANLPEEASNVKQSFATLEVACQELRNSRLFMKLLEAVLKTGNRMNVGTFRGGAQAFR 688

Query: 328 LDCFI 314
           LD  +
Sbjct: 689 LDTLL 693
tr_hit_id B4FN90
Definition tr|B4FN90|B4FN90_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 258
Score (bit) 52.0
E-value 3.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950764|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_I23, 5'
         (673 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4FN90|B4FN90_MAIZE Putative uncharacterized protein OS=Zea m...    52   3e-05
tr|Q22NZ6|Q22NZ6_TETTH Insect antifreeze protein OS=Tetrahymena ...    37   1.1  
tr|Q23C44|Q23C44_TETTH Putative uncharacterized protein OS=Tetra...    35   3.3  
tr|Q23C50|Q23C50_TETTH Putative uncharacterized protein OS=Tetra...    35   4.3  
tr|Q22NZ3|Q22NZ3_TETTH Putative uncharacterized protein OS=Tetra...    35   4.3  
tr|Q0P4X8|Q0P4X8_XENTR Putative uncharacterized protein MGC14524...    35   5.6  
tr|Q22CP5|Q22CP5_TETTH Putative uncharacterized protein OS=Tetra...    34   9.5  

>tr|B4FN90|B4FN90_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 431

 Score = 52.0 bits (123), Expect = 3e-05
 Identities = 56/258 (21%), Positives = 105/258 (40%), Gaps = 37/258 (14%)
 Frame = +3

Query: 3   HKSIKYIASQGFCVSPMKIQEHGN------RMPGSLCSNDALLFYQHSCS---------S 137
           H+ +   +++G+CV    I    N      ++P   C ++ + F +  C+         S
Sbjct: 165 HRYVATSSTKGYCVPDSWIDASKNLWQIRDKLP---CPDELIAFEKVICNVSTILTEKTS 221

Query: 138 AGPSSVHISENVLCFKAVDVVECPQCS----IKQDTSQSCSCPVSTSCLLPLLSSGEAFI 305
            G     + E   C  A DVV+  +C     + +D   SC+C     CL+P+L+ G ++I
Sbjct: 222 IGSDQKEV-EGKYCLIAKDVVKLRRCGNGWHMTEDDESSCACFEDEHCLVPVLNPGFSWI 280

Query: 306 GMRIKQSSVKHCRDAPNDPI-------------CERNPVFVGDVRVFSNSLQLTNYWPQQ 446
            +   +     C     + +             CE + V+VGD+   + S++L+ Y P+ 
Sbjct: 281 EVSYARPYSLRCLQKGGNLLSSHTANSNFGQSPCEGSFVYVGDLSSAARSVRLSRYRPR- 339

Query: 447 IGDFGFCFMLF-----RHLESLLTYTFXXXXXXXXXXXXXVFYLDGEQIFQAGLVLNKSW 611
                +  +LF       LE+ L+                V++LDGE I +  L    +W
Sbjct: 340 -----WALLLFIADIPYILENGLSSLLHASAALAVINCLPVYFLDGEAILETTLSY-VAW 393

Query: 612 VPPKRHAKIMRTVLTLGT 665
             P+   +I++    + T
Sbjct: 394 FTPRLQRRILKVCSVVWT 411


>tr|Q22NZ6|Q22NZ6_TETTH Insect antifreeze protein OS=Tetrahymena
            thermophila SB210 GN=TTHERM_00417970 PE=4 SV=1
          Length = 2162

 Score = 37.0 bits (84), Expect = 1.1
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +3

Query: 84   GSLCS--NDALLFYQHSCSSAGPSSVHISENVLCFKAVDVVECPQCSIKQDTSQSCS 248
            GS C+  N  L FY+ SC++A P + +  +N +C K    V C  C         C+
Sbjct: 930  GSSCTSCNSGLFFYEGSCTAAQPQNTYCGQNQVCTKC--TVNCSSCDSTLKVCNQCN 984


>tr|Q23C44|Q23C44_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00222410 PE=4
           SV=1
          Length = 2029

 Score = 35.4 bits (80), Expect = 3.3
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +3

Query: 114 FYQHSCSSAGPSSVHISENVLCFKAVDVVECPQCSIKQDTSQSC---SCPVSTSCLLPLL 284
           +YQ+ C S+ PSS +   N +C+       C  CS   +  QSC   S     +CL  + 
Sbjct: 339 YYQNQCLSSQPSSTYCDSNFICYSCDPY--CASCSNSSNNCQSCKANSYLYQNNCLAKIC 396

Query: 285 SSGE 296
            S +
Sbjct: 397 LSNQ 400


>tr|Q23C50|Q23C50_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00222350 PE=4
           SV=1
          Length = 1034

 Score = 35.0 bits (79), Expect = 4.3
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +3

Query: 114 FYQHSCSSAGPSSVHISENVLCFKAVDVVECPQCSIKQDTSQSCSCPVSTS 266
           FY +SC S+ P+S +   N +C K+ D + C QC    D +    C ++++
Sbjct: 439 FYNNSCLSSQPNSTYCDSNFIC-KSCD-LSCSQCVAPGDANSCTQCNINSA 487


>tr|Q22NZ3|Q22NZ3_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00418000 PE=4
           SV=1
          Length = 1341

 Score = 35.0 bits (79), Expect = 4.3
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
 Frame = +3

Query: 84  GSLCS--NDALLFYQHSCSSAGPSSVHISENVLCFKAVDVVECPQCSIKQDTSQSCSCPV 257
           GS C+  N  L FYQ +C+S  P + +   N LC        C +CS  Q++  +C    
Sbjct: 655 GSTCTVCNTGLYFYQGACTSQQPDNTYCDNNFLCQSCSS--NCSKCS-SQNSCTTCQSGF 711

Query: 258 -----STSCLLPLLSSGEAFIGMRIKQSSVKHCRDAPNDPICERNPVF 386
                S +   P  +  ++ +  +  QSS   C D  +   C     F
Sbjct: 712 YLFQGSCTSTQPNNTYCDSNLVCQKCQSSCSQCTDGSSCTACNSGQYF 759


>tr|Q0P4X8|Q0P4X8_XENTR Putative uncharacterized protein MGC145244
           OS=Xenopus tropicalis GN=MGC145244 PE=2 SV=1
          Length = 582

 Score = 34.7 bits (78), Expect = 5.6
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = -1

Query: 316 ILMPINASPELNNGSKHEVLTGQ---LHDWLVSCLMLHC--GHSTTSTALKQRTFSEICT 152
           I+MP NA P+L N +  + L G+   LHD   SCL  +C  G ST ++   Q+       
Sbjct: 177 IVMPTNAEPDLCNSNMIKELMGEKIPLHDKQTSCLGRNCSVGGSTVTSVQSQKRKESSLP 236

Query: 151 LE 146
           LE
Sbjct: 237 LE 238


>tr|Q22CP5|Q22CP5_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_01026340 PE=4
           SV=1
          Length = 1632

 Score = 33.9 bits (76), Expect = 9.5
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +3

Query: 33  GFCVSPMKIQEHGNRMPGSLCSNDALL--FYQHSCSSAGPSSVHISENVLCFKAVDVVEC 206
           G CVSP      GN    + C+ ++    FY + C S+ PSS     N +C K      C
Sbjct: 513 GECVSP------GNATSCTSCNINSTYKYFYNNQCFSSKPSSTFCDSNFICQKCNQT--C 564

Query: 207 PQCSIKQDTSQSCSCPVST 263
            +C    + +   SC +++
Sbjct: 565 GECISPGNATSCTSCDITS 583