DK950768 |
Clone id |
TST38A01NGRL0009_J03 |
Library |
TST38 |
Length |
700 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_J03. 5' end sequence. |
Accession |
DK950768 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
GAGAGAGAGAGAGAGAGAGAGAGATGCAGACCCGCCGCAAGAGAGAACCGCTCCATGAAG ATGCAGCAGAAACTGAGAAGCCAAGAAGAGGGGCAAAGAAACGTGGCCGCCCAGTGTCGT CCGAGGAAGAAAAACCAGAGCAGGCTGGCCCAAAGAAGGCACCCTCTCGCCCTCGACTGC AAAAAACCCCATCAAAGAAGCGTACGGCAGGCAAGAAGGGCCCAAAGAGTGGCAAGAAAG GTGCACCACAAGCAGAGCCCTCGGCGGCTCAAGCCTCAACGTCGGGTCATGAATCAGAGA TGAAGGAGGCAGAAAATAAAATTAAAGTAAATCGAGCACCTGTGCTGACCATGTGGGTGG CAGCCGTGGCAGAACGAGAGGGCTATTCTTTCGAGGAAGGGCTTAGCTTTGGTAAGGCCA TCGCCGGGCTCATGGCGCAGTCGAAAGGGCGGAGCTTGGGTGTGTACGAGGAGCCCTCGG AGGAGAAGAAAGAAGAGAGGAAGAGGAAGAGGAAGGAACTAGAAAGGTTTCCTGTGTTTG GCATGAATGTTCCTGGCAAGACGACGCANGAGGGTTTTCGGCTGGCAGTGCAAAGTGGGA AGCCTATATCGCCTTCATCTGTGGCGGAATATCTTTATAGAAGCTTTGGAGCCAACTACG AAAGAGCCAAAGGTGCAATGGAAGATCTAGCAAACTCTTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q80923 |
Definition |
sp|Q80923|VE2_HPV48 Regulatory protein E2 OS=Human papillomavirus type 48 |
Align length |
81 |
Score (bit) |
33.5 |
E-value |
1.1 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950768|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0009_J03, 5' (700 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q80923|VE2_HPV48 Regulatory protein E2 OS=Human papillomaviru... 33 1.1 sp|P0C5Z8|ATL_STAAU Bifunctional autolysin OS=Staphylococcus aur... 31 5.6 sp|Q99V41|ATL_STAAN Bifunctional autolysin OS=Staphylococcus aur... 31 5.6 sp|Q931U5|ATL_STAAM Bifunctional autolysin OS=Staphylococcus aur... 31 5.6 sp|A7X0T9|ATL_STAA1 Bifunctional autolysin OS=Staphylococcus aur... 31 5.6 sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein ... 31 7.4 sp|Q8NX96|ATL_STAAW Bifunctional autolysin OS=Staphylococcus aur... 31 7.4 sp|Q6GAG0|ATL_STAAS Bifunctional autolysin OS=Staphylococcus aur... 31 7.4 sp|Q6GI31|ATL_STAAR Bifunctional autolysin OS=Staphylococcus aur... 31 7.4 sp|Q5HH31|ATL_STAAC Bifunctional autolysin OS=Staphylococcus aur... 31 7.4 sp|Q2FZK7|ATL_STAA8 Bifunctional autolysin OS=Staphylococcus aur... 31 7.4 sp|Q83EJ0|THIC_COXBU Thiamine biosynthesis protein thiC OS=Coxie... 30 9.6 sp|Q7Z2Y5|NRK_HUMAN Nik-related protein kinase OS=Homo sapiens G... 30 9.6
>sp|Q80923|VE2_HPV48 Regulatory protein E2 OS=Human papillomavirus type 48 GN=E2 PE=3 SV=1 Length = 396
Score = 33.5 bits (75), Expect = 1.1 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 4/81 (4%) Frame = +2
Query: 29 DPPQERTAP*RCSRN*EAKKRGKETWP-PSVVRGRKT---RAGWPKEGTLSPSTAKNPIK 196 +P + T R +K G ++ P PS V R T R G+ + G L P+ Sbjct: 259 EPRESGTTDTTPRRRGTKRKLGSDSAPTPSEVGSRSTTLARHGYSRLGRLQEEARDPPLV 318
Query: 197 EAYGRQEGPKEWQERCTTSRA 259 G+Q K W+ RCTT A Sbjct: 319 LFTGQQNNLKCWRNRCTTKYA 339
>sp|P0C5Z8|ATL_STAAU Bifunctional autolysin OS=Staphylococcus aureus GN=atl PE=1 SV=1 Length = 1255
Score = 31.2 bits (69), Expect = 5.6 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = +2
Query: 143 GWPKEGTLSPSTAKNP--IKEAYGRQEGPKEWQERCTTSRALGGSSLNVGS 289 GW KEG + +TAK+P + ++Y + G K + TS+ + GS G+ Sbjct: 504 GWVKEGDVVYNTAKSPVNVNQSYSIKSGTKLYTVPWGTSKQVAGSVSGSGN 554
>sp|Q99V41|ATL_STAAN Bifunctional autolysin OS=Staphylococcus aureus (strain N315) GN=atl PE=1 SV=1 Length = 1248
Score = 31.2 bits (69), Expect = 5.6 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = +2
Query: 143 GWPKEGTLSPSTAKNP--IKEAYGRQEGPKEWQERCTTSRALGGSSLNVGS 289 GW KEG + +TAK+P + ++Y + G K + TS+ + GS G+ Sbjct: 497 GWVKEGDVVYNTAKSPVNVNQSYSIKSGTKLYTVPWGTSKQVAGSVSGSGN 547
>sp|Q931U5|ATL_STAAM Bifunctional autolysin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=atl PE=3 SV=2 Length = 1248
Score = 31.2 bits (69), Expect = 5.6 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = +2
Query: 143 GWPKEGTLSPSTAKNP--IKEAYGRQEGPKEWQERCTTSRALGGSSLNVGS 289 GW KEG + +TAK+P + ++Y + G K + TS+ + GS G+ Sbjct: 497 GWVKEGDVVYNTAKSPVNVNQSYSIKSGTKLYTVPWGTSKQVAGSVSGSGN 547
>sp|A7X0T9|ATL_STAA1 Bifunctional autolysin OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=atl PE=3 SV=2 Length = 1255
Score = 31.2 bits (69), Expect = 5.6 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = +2
Query: 143 GWPKEGTLSPSTAKNP--IKEAYGRQEGPKEWQERCTTSRALGGSSLNVGS 289 GW KEG + +TAK+P + ++Y + G K + TS+ + GS G+ Sbjct: 504 GWVKEGDVVYNTAKSPVNVNQSYSIKSGTKLYTVPWGTSKQVAGSVSGSGN 554
>sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein 1 OS=Gallus gallus GN=SRRM1 PE=2 SV=1 Length = 888
Score = 30.8 bits (68), Expect = 7.4 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%) Frame = +2
Query: 95 KETWPPSVVRGRKTRAGWP-----KEGTLSPSTAKNPIKEAYGRQEGPKE 229 K PPS R R A W K T SPS A+N +E G+++ K+ Sbjct: 755 KHQGPPSPARSRSPSANWSPAKKAKSPTQSPSPARNSDQEGGGKKKKKKK 804
>sp|Q8NX96|ATL_STAAW Bifunctional autolysin OS=Staphylococcus aureus (strain MW2) GN=atl PE=3 SV=1 Length = 1256
Score = 30.8 bits (68), Expect = 7.4 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = +2
Query: 143 GWPKEGTLSPSTAKNP--IKEAYGRQEGPKEWQERCTTSRALGGSSLNVGS 289 GW KEG + +TAK+P + ++Y + G K + TS+ + GS G+ Sbjct: 505 GWVKEGDVVYNTAKSPVNVNQSYSIKPGTKLYTVPWGTSKQVAGSVSGSGN 555
>sp|Q6GAG0|ATL_STAAS Bifunctional autolysin OS=Staphylococcus aureus (strain MSSA476) GN=atl PE=3 SV=1 Length = 1250
Score = 30.8 bits (68), Expect = 7.4 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = +2
Query: 143 GWPKEGTLSPSTAKNP--IKEAYGRQEGPKEWQERCTTSRALGGSSLNVGS 289 GW KEG + +TAK+P + ++Y + G K + TS+ + GS G+ Sbjct: 499 GWVKEGDVVYNTAKSPVNVNQSYSIKPGTKLYTVPWGTSKQVAGSVSGSGN 549
>sp|Q6GI31|ATL_STAAR Bifunctional autolysin OS=Staphylococcus aureus (strain MRSA252) GN=atl PE=3 SV=1 Length = 1257
Score = 30.8 bits (68), Expect = 7.4 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = +2
Query: 143 GWPKEGTLSPSTAKNP--IKEAYGRQEGPKEWQERCTTSRALGGSSLNVGS 289 GW KEG + +TAK+P + ++Y + G K + TS+ + GS G+ Sbjct: 506 GWVKEGDVVYNTAKSPVNVNQSYSIKPGTKLYTVPWGTSKQVAGSVSGSGN 556
>sp|Q5HH31|ATL_STAAC Bifunctional autolysin OS=Staphylococcus aureus (strain COL) GN=atl PE=3 SV=1 Length = 1256
Score = 30.8 bits (68), Expect = 7.4 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = +2
Query: 143 GWPKEGTLSPSTAKNP--IKEAYGRQEGPKEWQERCTTSRALGGSSLNVGS 289 GW KEG + +TAK+P + ++Y + G K + TS+ + GS G+ Sbjct: 505 GWVKEGDVVYNTAKSPVNVNQSYSIKPGTKLYTVPWGTSKQVAGSVSGSGN 555
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LMP8 |
Definition |
tr|B8LMP8|B8LMP8_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
133 |
Score (bit) |
136.0 |
E-value |
1.0e-30 |
Report |
|