DK950769 |
Clone id |
TST38A01NGRL0009_J04 |
Library |
TST38 |
Length |
684 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_J04. 5' end sequence. |
Accession |
DK950769 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
CTCTCATCAGAATATCTCTCCTCCAAAACACTCATAATTAGCGAACGGCACCTGCTCTAT CTCTCTCTCGCTGTCTGTCTCCTCTCTCTCACACAGAAAAATTACAAAGCGCGCGCACAC ATACGTACGCATCCCTCCGCTCAGAAATTTTACAAAGGTTATGATGGATAGAGAGTCTGT GTTGAGTGCGGCCGTAGTCCTCGTATTGGCTGTTATTCTATTCATGTTTTGGCTACACGC TTGTGGGAGATGGAAGCAGAGGCGCGCAGAGGAATTAGACGACCAAGAGGGAGCTGCACC AATAACAAGAAAGGGGCTAGATAAGGCAGCGTTGGAGGCGCTTCCCACGTTTGTGTACAG CAGCGTCGACATAGATCCTATTCATCATTCTCATTCTCATTCTCATTCTCAGCAACGTCA GGATGGCAGCACAGAGCGCAAGCAAATGGTGGAGTGCCCTGTGTGCTTGAGCGAGTTTCA GGAGGCGGAGAGAGGCCGCCTGCTGCCCAATTGCAGGCACCGCTTTCACGTGGACTGCAT CGACACGTGGCTGCTGGCGAATGGCACGTGCCCTGTATGCAGGGCCAGCTGTGCGGCGGA CGTGGCGGTGCAGGTGGCGCAGGGGCAGGGGCAGGGGCAGGTGTCGGTGGGCGTCGTGGG CGTGCAGTACCCCACCAATGTCCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O22255 |
Definition |
sp|O22255|ATL2N_ARATH RING-H2 finger protein ATL2N OS=Arabidopsis thaliana |
Align length |
132 |
Score (bit) |
89.0 |
E-value |
2.0e-17 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NWQ5 |
Definition |
tr|A9NWQ5|A9NWQ5_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
136 |
Score (bit) |
90.9 |
E-value |
7.0e-17 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950769|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0009_J04, 5' (684 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NWQ5|A9NWQ5_PICSI Putative uncharacterized protein OS=Picea... 91 7e-17 tr|B0ZCL2|B0ZCL2_ARALY At1g04360-like protein (Fragment) OS=Arab... 90 2e-16 tr|B0ZCI2|B0ZCI2_ARATH At1g04360 (Fragment) OS=Arabidopsis thali... 88 4e-16 tr|B0ZCL0|B0ZCL0_ARATH At1g04360 (Fragment) OS=Arabidopsis thali... 88 6e-16 tr|B0ZCJ3|B0ZCJ3_ARATH At1g04360 (Fragment) OS=Arabidopsis thali... 88 6e-16 tr|B0ZCI6|B0ZCI6_ARATH At1g04360 (Fragment) OS=Arabidopsis thali... 88 6e-16 tr|B0ZCI4|B0ZCI4_ARATH At1g04360 (Fragment) OS=Arabidopsis thali... 88 6e-16 tr|B0ZCI3|B0ZCI3_ARATH At1g04360 (Fragment) OS=Arabidopsis thali... 88 6e-16 tr|B0ZCH9|B0ZCH9_ARATH At1g04360 (Fragment) OS=Arabidopsis thali... 88 6e-16 tr|B0ZCH7|B0ZCH7_ARATH At1g04360 (Fragment) OS=Arabidopsis thali... 88 6e-16 tr|B0ZCH2|B0ZCH2_ARATH At1g04360 (Fragment) OS=Arabidopsis thali... 88 6e-16 tr|B0ZCH0|B0ZCH0_ARATH At1g04360 (Fragment) OS=Arabidopsis thali... 88 6e-16 tr|B0ZCG8|B0ZCG8_ARATH At1g04360 (Fragment) OS=Arabidopsis thali... 88 6e-16 tr|B8LL09|B8LL09_PICSI Putative uncharacterized protein OS=Picea... 87 8e-16 tr|B0ZCI5|B0ZCI5_ARATH At1g04360 (Fragment) OS=Arabidopsis thali... 87 8e-16 tr|B0ZCG9|B0ZCG9_ARATH At1g04360 (Fragment) OS=Arabidopsis thali... 87 8e-16 tr|Q6K716|Q6K716_ORYSJ Os02g0820200 protein OS=Oryza sativa subs... 87 1e-15 tr|Q4FE42|Q4FE42_ARATH At3g16720 OS=Arabidopsis thaliana PE=2 SV=1 87 1e-15 tr|B8AF42|B8AF42_ORYSI Putative uncharacterized protein OS=Oryza... 87 1e-15 tr|A3ACR6|A3ACR6_ORYSJ Putative uncharacterized protein OS=Oryza... 87 1e-15 tr|A7Q8F7|A7Q8F7_VITVI Chromosome chr5 scaffold_64, whole genome... 86 3e-15 tr|Q6Z8P9|Q6Z8P9_ORYSJ Os08g0445000 protein OS=Oryza sativa subs... 85 4e-15 tr|B4FZV3|B4FZV3_MAIZE Putative uncharacterized protein OS=Zea m... 85 4e-15 tr|A9T8Z5|A9T8Z5_PHYPA Predicted protein OS=Physcomitrella paten... 85 4e-15 tr|A2YVP9|A2YVP9_ORYSI Putative uncharacterized protein OS=Oryza... 85 4e-15 tr|B6SI61|B6SI61_MAIZE RING-H2 finger protein ATL2A OS=Zea mays ... 85 5e-15 tr|Q5VRG7|Q5VRG7_ORYSJ Os06g0167200 protein OS=Oryza sativa subs... 84 6e-15 tr|B6U6T9|B6U6T9_MAIZE RING-H2 finger protein ATL3F OS=Zea mays ... 84 6e-15 tr|B4FJ64|B4FJ64_MAIZE Putative uncharacterized protein OS=Zea m... 84 6e-15 tr|A2Y9S1|A2Y9S1_ORYSI Putative uncharacterized protein OS=Oryza... 84 6e-15
>tr|A9NWQ5|A9NWQ5_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 321
Score = 90.9 bits (224), Expect = 7e-17 Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 7/136 (5%) Frame = +2
Query: 215 ILFMFWLHACGR--WKQRRAEELD-----DQEGAAPITRKGLDKAALEALPTFVYSSVDI 373 +LF+ LH R W +R + L ++ + R GL K+A+EA+P FVY + Sbjct: 38 VLFVLGLHIYARCIWGRRGSLRLRRLAFIGEQDPPRLQRVGLGKSAIEAIPAFVYQT--- 94
Query: 374 DPIXXXXXXXXXQQRQDGSTERKQMVECPVCLSEFQEAERGRLLPNCRHRFHVDCIDTWL 553 + +DG +EC VCL EF+ E+GRLLP C H FH++CID W Sbjct: 95 ------------ENYKDG-------LECAVCLCEFESNEKGRLLPKCNHSFHIECIDMWF 135
Query: 554 LANGTCPVCRASCAAD 601 ++ TCP+CRAS D Sbjct: 136 QSHSTCPLCRASAQPD 151
>tr|B0ZCL2|B0ZCL2_ARALY At1g04360-like protein (Fragment) OS=Arabidopsis lyrata PE=4 SV=1 Length = 361
Score = 89.7 bits (221), Expect = 2e-16 Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 8/135 (5%) Frame = +2
Query: 221 FMFWLHACGRWKQ----RRAEELDDQEGAAPIT----RKGLDKAALEALPTFVYSSVDID 376 ++F + C W Q RR DQ + +GLD++A+ A+P F + D+ Sbjct: 50 YIFVIKCCLNWHQIDIFRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDV- 108
Query: 377 PIXXXXXXXXXQQRQDGSTERKQMVECPVCLSEFQEAERGRLLPNCRHRFHVDCIDTWLL 556 + K EC VCL+EFQE E+ R++PNC H FH+DCID WL Sbjct: 109 -------------AAGEDDQNKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQ 155
Query: 557 ANGTCPVCRASCAAD 601 N CP+CR S + D Sbjct: 156 GNANCPLCRTSVSCD 170
>tr|B0ZCI2|B0ZCI2_ARATH At1g04360 (Fragment) OS=Arabidopsis thaliana PE=4 SV=1 Length = 350
Score = 88.2 bits (217), Expect = 4e-16 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 8/135 (5%) Frame = +2
Query: 221 FMFWLHACGRWKQ----RRAEELDDQEG----AAPITRKGLDKAALEALPTFVYSSVDID 376 ++F + C W Q RR DQ + +GLD++A+ A+P F + D+ Sbjct: 44 YIFVIKCCLNWHQIDIFRRRRRSSDQNPLMIYSPQEVNRGLDESAIRAIPVFKFKKRDV- 102
Query: 377 PIXXXXXXXXXQQRQDGSTERKQMVECPVCLSEFQEAERGRLLPNCRHRFHVDCIDTWLL 556 +D S K EC VCL+EFQE E+ R++PNC H FH+DCID WL Sbjct: 103 ----------VAGEEDQS---KNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQ 149
Query: 557 ANGTCPVCRASCAAD 601 N CP+CR S + + Sbjct: 150 GNANCPLCRTSVSCE 164
>tr|B0ZCL0|B0ZCL0_ARATH At1g04360 (Fragment) OS=Arabidopsis thaliana PE=4 SV=1 Length = 350
Score = 87.8 bits (216), Expect = 6e-16 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 8/135 (5%) Frame = +2
Query: 221 FMFWLHACGRWKQ----RRAEELDDQEGAAPIT----RKGLDKAALEALPTFVYSSVDID 376 ++F + C W Q RR DQ + +GLD++A+ A+P F + D+ Sbjct: 44 YIFVIKCCLNWHQIDIFRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDV- 102
Query: 377 PIXXXXXXXXXQQRQDGSTERKQMVECPVCLSEFQEAERGRLLPNCRHRFHVDCIDTWLL 556 +D S K EC VCL+EFQE E+ R++PNC H FH+DCID WL Sbjct: 103 ----------VAGEEDQS---KNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQ 149
Query: 557 ANGTCPVCRASCAAD 601 N CP+CR S + + Sbjct: 150 GNANCPLCRTSVSCE 164
>tr|B0ZCJ3|B0ZCJ3_ARATH At1g04360 (Fragment) OS=Arabidopsis thaliana PE=4 SV=1 Length = 350
Score = 87.8 bits (216), Expect = 6e-16 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 8/135 (5%) Frame = +2
Query: 221 FMFWLHACGRWKQ----RRAEELDDQEGAAPIT----RKGLDKAALEALPTFVYSSVDID 376 ++F + C W Q RR DQ + +GLD++A+ A+P F + D+ Sbjct: 44 YIFVIKCCLNWHQIDIFRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDV- 102
Query: 377 PIXXXXXXXXXQQRQDGSTERKQMVECPVCLSEFQEAERGRLLPNCRHRFHVDCIDTWLL 556 +D S K EC VCL+EFQE E+ R++PNC H FH+DCID WL Sbjct: 103 ----------VAGEEDQS---KNSQECSVCLNEFQEDEKLRIIPNCWHVFHIDCIDIWLQ 149
Query: 557 ANGTCPVCRASCAAD 601 N CP+CR S + + Sbjct: 150 GNANCPLCRTSVSCE 164
>tr|B0ZCI6|B0ZCI6_ARATH At1g04360 (Fragment) OS=Arabidopsis thaliana PE=4 SV=1 Length = 350
Score = 87.8 bits (216), Expect = 6e-16 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 8/135 (5%) Frame = +2
Query: 221 FMFWLHACGRWKQ----RRAEELDDQEGAAPIT----RKGLDKAALEALPTFVYSSVDID 376 ++F + C W Q RR DQ + +GLD++A+ A+P F + D+ Sbjct: 44 YIFVIKCCLNWHQIDIFRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDV- 102
Query: 377 PIXXXXXXXXXQQRQDGSTERKQMVECPVCLSEFQEAERGRLLPNCRHRFHVDCIDTWLL 556 +D S K EC VCL+EFQE E+ R++PNC H FH+DCID WL Sbjct: 103 ----------VAGEEDQS---KNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQ 149
Query: 557 ANGTCPVCRASCAAD 601 N CP+CR S + + Sbjct: 150 GNANCPLCRTSVSCE 164
>tr|B0ZCI4|B0ZCI4_ARATH At1g04360 (Fragment) OS=Arabidopsis thaliana PE=4 SV=1 Length = 350
Score = 87.8 bits (216), Expect = 6e-16 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 8/135 (5%) Frame = +2
Query: 221 FMFWLHACGRWKQ----RRAEELDDQEGAAPIT----RKGLDKAALEALPTFVYSSVDID 376 ++F + C W Q RR DQ + +GLD++A+ A+P F + D+ Sbjct: 44 YIFVIKCCLNWHQIDIFRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDV- 102
Query: 377 PIXXXXXXXXXQQRQDGSTERKQMVECPVCLSEFQEAERGRLLPNCRHRFHVDCIDTWLL 556 +D S K EC VCL+EFQE E+ R++PNC H FH+DCID WL Sbjct: 103 ----------VAGEEDQS---KNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQ 149
Query: 557 ANGTCPVCRASCAAD 601 N CP+CR S + + Sbjct: 150 GNANCPLCRTSVSCE 164
>tr|B0ZCI3|B0ZCI3_ARATH At1g04360 (Fragment) OS=Arabidopsis thaliana PE=4 SV=1 Length = 350
Score = 87.8 bits (216), Expect = 6e-16 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 8/135 (5%) Frame = +2
Query: 221 FMFWLHACGRWKQ----RRAEELDDQEGAAPIT----RKGLDKAALEALPTFVYSSVDID 376 ++F + C W Q RR DQ + +GLD++A+ A+P F + D+ Sbjct: 44 YIFVIKCCLNWHQIDIFRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDV- 102
Query: 377 PIXXXXXXXXXQQRQDGSTERKQMVECPVCLSEFQEAERGRLLPNCRHRFHVDCIDTWLL 556 +D S K EC VCL+EFQE E+ R++PNC H FH+DCID WL Sbjct: 103 ----------VAGEEDQS---KNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQ 149
Query: 557 ANGTCPVCRASCAAD 601 N CP+CR S + + Sbjct: 150 GNANCPLCRTSVSCE 164
>tr|B0ZCH9|B0ZCH9_ARATH At1g04360 (Fragment) OS=Arabidopsis thaliana PE=4 SV=1 Length = 360
Score = 87.8 bits (216), Expect = 6e-16 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 8/135 (5%) Frame = +2
Query: 221 FMFWLHACGRWKQ----RRAEELDDQEGAAPIT----RKGLDKAALEALPTFVYSSVDID 376 ++F + C W Q RR DQ + +GLD++A+ A+P F + D+ Sbjct: 50 YIFVIKCCLNWHQIDIFRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDV- 108
Query: 377 PIXXXXXXXXXQQRQDGSTERKQMVECPVCLSEFQEAERGRLLPNCRHRFHVDCIDTWLL 556 +D S K EC VCL+EFQE E+ R++PNC H FH+DCID WL Sbjct: 109 ----------VAGEEDQS---KNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQ 155
Query: 557 ANGTCPVCRASCAAD 601 N CP+CR S + + Sbjct: 156 GNANCPLCRTSVSCE 170
>tr|B0ZCH7|B0ZCH7_ARATH At1g04360 (Fragment) OS=Arabidopsis thaliana PE=4 SV=1 Length = 360
Score = 87.8 bits (216), Expect = 6e-16 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 8/135 (5%) Frame = +2
Query: 221 FMFWLHACGRWKQ----RRAEELDDQEGAAPIT----RKGLDKAALEALPTFVYSSVDID 376 ++F + C W Q RR DQ + +GLD++A+ A+P F + D+ Sbjct: 50 YIFVIKCCLNWHQIDIFRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDV- 108
Query: 377 PIXXXXXXXXXQQRQDGSTERKQMVECPVCLSEFQEAERGRLLPNCRHRFHVDCIDTWLL 556 +D S K EC VCL+EFQE E+ R++PNC H FH+DCID WL Sbjct: 109 ----------VAGEEDQS---KNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQ 155
Query: 557 ANGTCPVCRASCAAD 601 N CP+CR S + + Sbjct: 156 GNANCPLCRTSVSCE 170
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