DK950772 |
Clone id |
TST38A01NGRL0009_J08 |
Library |
TST38 |
Length |
695 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_J08. 5' end sequence. |
Accession |
DK950772 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL128Contig1 |
Sequence |
GTGAGCGTGAGGGCGGCCACACCCACAGCCCTCTGTGTAGCTACAACGCCGTCCCCTGCG TCGTCTTCGCGCTCGTTGTCATACCGCCTCCCCGCCATCAGAGGATCCCTTAAGCATCAG GGATGCAACACATCTAGCAGCTCCTCGCTTCAGGAGAGCCTACAGCGCATGGCTACCAAG ATCACTCAAAACCCTACCCTTCGCAATGCTGCTTTCTTTGCGATGAATGCCCTCTGGGCA GTGCCAGCCATAGCTGCAGAAGTCGCAGCAGAGGCAGAAGAGAAGGGAAAGATTTTCGAT TTTAATCTCACCCTCCCCATTATCGCGGCAGAGTTCCTGTTGCTCATGGTGACTTTGGAC AACATATGGTTTAAGCCCGCGCCCAAGGTTATGGATGACAGAGATGAAGCAATCAGGCAG AAGCTTATGAGTGTGCGCGACAATTCCGACGAGATCAAGAAGCTGCAAGAGCAGGCTGAG GCGATCCTCAAGGCCGCACGTGCAGAGACCACGGCGGAGCTCAACAAGATGAAGAGGGAG ACGGCAGCAAAGCTTGATGCCAAGCTTCAGGAATCACGCGAAAGAATAGAGAAAGAGCTT GCAGAAGCTATTGCAAACCTAGAGGTGCAGAAGCAGGAGACTTTGAAGAGCCTTGACAAG GAAGTCCAAGATCTAAGTGAGGAGATTATTGCTAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P31853 |
Definition |
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea |
Align length |
136 |
Score (bit) |
152.0 |
E-value |
2.0e-36 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950772|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0009_J08, 5' (695 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spi... 152 2e-36 sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Por... 92 3e-18 sp|P51245|ATPX_PORPU ATP synthase B' chain, chloroplastic OS=Por... 92 3e-18 sp|P48085|ATPX_CYAPA ATP synthase B' chain, cyanelle OS=Cyanopho... 89 2e-17 sp|Q05367|ATPX_SYNP1 ATP synthase B' chain OS=Synechococcus sp. ... 89 2e-17 sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Gui... 82 3e-15 sp|Q9TM29|ATPX_CYACA ATP synthase B' chain, chloroplastic OS=Cya... 80 1e-14 sp|Q02852|ATPX_ANTSP ATP synthase B' chain, chloroplastic OS=Ant... 79 2e-14 sp|P35012|ATPX_GALSU ATP synthase B' chain, chloroplastic OS=Gal... 79 3e-14 sp|P08446|ATPX_SYNP6 ATP synthase B' chain OS=Synechococcus sp. ... 77 7e-14 sp|P12410|ATPX_ANASP ATP synthase B' chain OS=Anabaena sp. (stra... 76 2e-13 sp|P27183|ATPX_SYNY3 ATP synthase B' chain OS=Synechocystis sp. ... 76 2e-13 sp|Q00823|ATPX_ODOSI ATP synthase B' chain, chloroplastic OS=Odo... 70 8e-12 sp|Q40608|ATPX_OCHNE ATP synthase B' chain, chloroplastic OS=Och... 69 2e-11 sp|P21904|ATPF_PROMO ATP synthase B chain, sodium ion specific O... 59 2e-08 sp|P20601|ATPF_BACME ATP synthase B chain OS=Bacillus megaterium... 56 2e-07 sp|Q5SHB3|CNPD_THET8 2',3'-cyclic-nucleotide 2'-phosphodiesteras... 45 3e-04 sp|Q72HM1|CNPD_THET2 2',3'-cyclic-nucleotide 2'-phosphodiesteras... 45 4e-04 sp|P41172|ATPF_THIFE ATP synthase B chain OS=Thiobacillus ferroo... 45 5e-04 sp|Q5TZA2|CROCC_HUMAN Rootletin OS=Homo sapiens GN=CROCC PE=1 SV=1 44 0.001 sp|Q49Z54|ATPF_STAS1 ATP synthase B chain OS=Staphylococcus sapr... 43 0.001 sp|O29104|VATE_ARCFU V-type ATP synthase subunit E OS=Archaeoglo... 42 0.002 sp|Q7A0C4|ATPF_STAAW ATP synthase B chain OS=Staphylococcus aure... 42 0.002 sp|Q6G7K3|ATPF_STAAS ATP synthase B chain OS=Staphylococcus aure... 42 0.002 sp|Q6GEW8|ATPF_STAAR ATP synthase B chain OS=Staphylococcus aure... 42 0.002 sp|Q7A4E7|ATPF_STAAN ATP synthase B chain OS=Staphylococcus aure... 42 0.002 sp|Q99SF1|ATPF_STAAM ATP synthase B chain OS=Staphylococcus aure... 42 0.002 sp|Q5HE93|ATPF_STAAC ATP synthase B chain OS=Staphylococcus aure... 42 0.002 sp|A2AJI0|MA7D1_MOUSE MAP7 domain-containing protein 1 OS=Mus mu... 42 0.003 sp|Q80UF4|SDCG8_MOUSE Serologically defined colon cancer antigen... 41 0.005
>sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2 Length = 222
Score = 152 bits (384), Expect = 2e-36 Identities = 73/136 (53%), Positives = 104/136 (76%) Frame = +1
Query: 283 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPAPKVMDDRDEAIRQKLMSVRDNSDEIKK 462 K +FDFNLTLPII AEFL LM LD I++ P MD RD +I+++L V+D S E+K+ Sbjct: 80 KASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRDASIKEQLSGVKDTSSEVKQ 139
Query: 463 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQET 642 L+EQA A+++AARAE +A LNKMK+ET +++AKL E R++IE EL EA+ +LE QK++T Sbjct: 140 LEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKKIEVELQEALGSLEQQKEDT 199
Query: 643 LKSLDKEVQDLSEEII 690 +KSLD ++ LS++I+ Sbjct: 200 IKSLDSQISALSDDIV 215
>sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Porphyra yezoensis GN=atpG PE=3 SV=1 Length = 156
Score = 92.0 bits (227), Expect = 3e-18 Identities = 50/135 (37%), Positives = 81/135 (60%) Frame = +1
Query: 283 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPAPKVMDDRDEAIRQKLMSVRDNSDEIKK 462 +G +FDFN TLP++A +FL LMV L+ I++KP KV+D+RDE IR L + + + Sbjct: 13 EGGLFDFNGTLPLMALQFLTLMVLLNTIFYKPVTKVLDERDEYIRTTLTTASSMLVKADE 72
Query: 463 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQET 642 L + E L AR ++ ++E + +++++ EK +AEA L VQK+E Sbjct: 73 LAAKYEEDLSEARRNAQLKIASSQKEAQNIVSEDIKKAQLNAEKLIAEASKQLNVQKEEA 132
Query: 643 LKSLDKEVQDLSEEI 687 LK+L+ +V LS++I Sbjct: 133 LKTLENQVDTLSDQI 147
>sp|P51245|ATPX_PORPU ATP synthase B' chain, chloroplastic OS=Porphyra purpurea GN=atpG PE=3 SV=1 Length = 158
Score = 92.0 bits (227), Expect = 3e-18 Identities = 46/135 (34%), Positives = 84/135 (62%) Frame = +1
Query: 283 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPAPKVMDDRDEAIRQKLMSVRDNSDEIKK 462 +G +FDFN TLP++A +FL+LM+ L+ I++KP K++D+RDE IR L + + + Sbjct: 13 EGGLFDFNGTLPLMALQFLILMLLLNTIFYKPVTKILDERDEYIRTTLTTASSMLVKADE 72
Query: 463 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQET 642 L + E L AR + A++ +++ + + +++++ EK + EA L +QK+E Sbjct: 73 LAAKYEEDLSKARRDAQAKIAASQKDAQSIVSEDIKKAQMNAEKLITEASKQLNIQKEEA 132
Query: 643 LKSLDKEVQDLSEEI 687 LK+L+ +V LS++I Sbjct: 133 LKTLEDQVDTLSDQI 147
>sp|P48085|ATPX_CYAPA ATP synthase B' chain, cyanelle OS=Cyanophora paradoxa GN=atpG PE=3 SV=1 Length = 164
Score = 89.4 bits (220), Expect = 2e-17 Identities = 47/136 (34%), Positives = 79/136 (58%) Frame = +1
Query: 283 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPAPKVMDDRDEAIRQKLMSVRDNSDEIKK 462 +G +FDF+ TLP++ + L+LM+ L+ +++KP K++D+R E I+ + + Sbjct: 18 EGGLFDFDATLPVMMVQLLVLMLILNAVFYKPLIKILDERKEYIQSNFNEAEKCLAQAAE 77
Query: 463 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQET 642 L Q E + AR + N + E + KL+E++++ + ELA A LE+QK E Sbjct: 78 LTTQYETKITDARQNASKLTNTTRSEIQRFVSEKLEEAQKKADSELASATNKLELQKDEA 137
Query: 643 LKSLDKEVQDLSEEII 690 LKSL+ EVQ LS +I+ Sbjct: 138 LKSLESEVQTLSTKIL 153
>sp|Q05367|ATPX_SYNP1 ATP synthase B' chain OS=Synechococcus sp. (strain PCC 6716) GN=atpG PE=3 SV=1 Length = 159
Score = 89.0 bits (219), Expect = 2e-17 Identities = 45/134 (33%), Positives = 81/134 (60%) Frame = +1
Query: 292 IFDFNLTLPIIAAEFLLLMVTLDNIWFKPAPKVMDDRDEAIRQKLMSVRDNSDEIKKLQE 471 +FDF+ TLP++A +FL+L V L+ + +KP + +D+RDE IR L ++ + +L Sbjct: 22 MFDFDATLPLMAVQFLILTVILNALLYKPLGQALDNRDEYIRTNLQQAKERLQQATELAN 81
Query: 472 QAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQETLKS 651 Q E L R E A + + + E A++ +++ ++ EL +A A ++ QKQ TL++ Sbjct: 82 QYEQELAYTRREAQAIIEEARAEAQKIATAEIAAAQQALQAELMKAQAEIDQQKQATLQA 141
Query: 652 LDKEVQDLSEEIIA 693 L+ +V LSE+++A Sbjct: 142 LEGQVSSLSEQLLA 155
>sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Guillardia theta GN=atpG PE=3 SV=1 Length = 163
Score = 82.0 bits (201), Expect = 3e-15 Identities = 43/135 (31%), Positives = 80/135 (59%) Frame = +1
Query: 283 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPAPKVMDDRDEAIRQKLMSVRDNSDEIKK 462 +G +FDFN TLP++A + LL MV L+ +++ P KV+D+R+E IR+ L D + + Sbjct: 18 EGGLFDFNATLPLMAVQILLFMVILNAVFYNPVAKVLDEREEYIRKNLTQASDILAKAEA 77
Query: 463 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQET 642 + +Q E L R E ++ ++E + +++++++ E + EA + L QKQ+ Sbjct: 78 ITKQYEKDLAQERREAQLIISVAQKEAQDIVALEIKQAQKDTELLVNEATSQLNSQKQKA 137
Query: 643 LKSLDKEVQDLSEEI 687 L +L+ +V L+E+I Sbjct: 138 LSALEDQVNTLTEQI 152
>sp|Q9TM29|ATPX_CYACA ATP synthase B' chain, chloroplastic OS=Cyanidium caldarium GN=atpG PE=3 SV=1 Length = 157
Score = 80.1 bits (196), Expect = 1e-14 Identities = 40/134 (29%), Positives = 86/134 (64%) Frame = +1
Query: 286 GKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPAPKVMDDRDEAIRQKLMSVRDNSDEIKKL 465 G +FDF+ TLP++A++FLL+M+ LD ++KP KV+ DR+ I + L S S++ K+ Sbjct: 15 GGLFDFDATLPLMASQFLLIMLILDITFYKPINKVLKDRENYILKTLESATQISEKTKET 74
Query: 466 QEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQETL 645 + E ++ ++ E+ ++ +K +T + +L +++ + ++++I L +K++TL Sbjct: 75 LARYEEVILKSKKESQQLIDSIKTKTEHDIVNELIQTQNSTREFISKSIKELYRKKEQTL 134
Query: 646 KSLDKEVQDLSEEI 687 K L+++ ++LS++I Sbjct: 135 KVLEEDTENLSDKI 148
>sp|Q02852|ATPX_ANTSP ATP synthase B' chain, chloroplastic OS=Antithamnion sp. GN=atpG PE=3 SV=1 Length = 159
Score = 79.3 bits (194), Expect = 2e-14 Identities = 39/135 (28%), Positives = 80/135 (59%) Frame = +1
Query: 283 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPAPKVMDDRDEAIRQKLMSVRDNSDEIKK 462 +G +FDFN TLP++A +FL L + L+ I++KP K++D+RDE I L + + Sbjct: 18 QGGLFDFNATLPLMALQFLALTIILNLIYYKPLGKILDERDEYIANSLTAASAALSKAND 77
Query: 463 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQET 642 L ++ E L +R + + +++ + +K++E+++ ++ ++ L +QK++ Sbjct: 78 LTKRYEQDLAESRKKAQDIIKNAQQDAQNIVSSKIKEAQKDADQLMSNTYDQLNIQKEQA 137
Query: 643 LKSLDKEVQDLSEEI 687 L++L+K+V LS +I Sbjct: 138 LQNLEKQVDILSNQI 152
>sp|P35012|ATPX_GALSU ATP synthase B' chain, chloroplastic OS=Galdieria sulphuraria GN=atpG PE=3 SV=1 Length = 157
Score = 78.6 bits (192), Expect = 3e-14 Identities = 42/134 (31%), Positives = 78/134 (58%) Frame = +1
Query: 286 GKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPAPKVMDDRDEAIRQKLMSVRDNSDEIKKL 465 G +FDF+ TL IA EFLLL L+ I+++P KV+D R++ IR+ L D+ +L Sbjct: 15 GGLFDFDATLSFIALEFLLLTSVLNLIYYQPISKVIDSREDYIRENLNKASLYLDQANEL 74
Query: 466 QEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQETL 645 ++ E L AR E + + E ++A++ ++++ ++ + ++ E +K + + Sbjct: 75 TKKYELELITARKEAIKMVTTSQTEAQEFVNAQISQAQKEAQQLIQSSMMQFEKEKNKAI 134
Query: 646 KSLDKEVQDLSEEI 687 SL+K+V+ LSE+I Sbjct: 135 YSLEKQVEQLSEQI 148
>sp|P08446|ATPX_SYNP6 ATP synthase B' chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=atpG PE=3 SV=1 Length = 158
Score = 77.4 bits (189), Expect = 7e-14 Identities = 41/136 (30%), Positives = 77/136 (56%) Frame = +1
Query: 283 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPAPKVMDDRDEAIRQKLMSVRDNSDEIKK 462 +G +FD + TLP++A + L+L+ L+ +++KP KV+DDRD+ +R + E+K Sbjct: 16 EGGLFDLDATLPLMAVQILVLVFLLNAVFYKPFGKVLDDRDQFVRGGRQDAKARLAEVKA 75
Query: 463 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQET 642 L Q E L A R ++ A + + + E +L E++ + + +A ++ QK Sbjct: 76 LTAQYEQELAATRKQSQALIAEAQTEAGRIAAQQLAEAQREAQAQREQAQQEIDQQKAVA 135
Query: 643 LKSLDKEVQDLSEEII 690 L++LD++V LS +I+ Sbjct: 136 LQALDQQVDALSHQIL 151
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RKV9 |
Definition |
tr|A9RKV9|A9RKV9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
165 |
Score (bit) |
202.0 |
E-value |
2.0e-50 |
Report |
|