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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950774
Clone id TST38A01NGRL0009_J11
Library
Length 661
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_J11. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GAGAGAGATCGTGTGTGCGCACCGCGCAGTCGACTGCGAGAGAGCACCCACCTCATAAGA
AGGGTCTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGCG
ATGCCAACTTGCTCTTATTTTTTTTAGCTAGGCTAACCTTGCATTGGCAGGAAGCTCCCT
CACAGCTTCTCCGCCTCTCCTTGCCTTGTTTCACACACACACAGGATCACCTCCAGAGTA
CATCTCCTGCCTCCCTCCACTACTAGTTGACCTCCCACAACTTGAGAGATATTCTGGCTC
AACACCTCTATCGCTCTTCATCTGAGTAGTGCGACATAGCAGCGGTGTTCTCCTTCCTTC
CTTATTTTGTTTCTCCCCCCCCCCCGATGCATGCGAAATCTGACTAAAAAAAAAGGAGGG
TGCCGGGTTCCTCCCCGCCTCGCTCGCCCCGCCNCCNTGGCNTATTGCTCNGGCCGCCCG
CGTACTATGTGCAGAGCCCGTCGCGCGACTCGCACGATGGTGGTGATTCAAAGCTCTCAT
TCCAATCCACGCCTCTCTTGAGCCCAGTGGGGTCGCCTCTCCACCCTTTAGCCACTGCAT
CTGCGACGTCTGATACCCGCTCCTCGACCTCGTCGCTACCGCCCGTCGCTGTCACACGCA
A
■■Homology search results ■■ -
sp_hit_id Q140U6
Definition sp|Q140U6|IF2_BURXL Translation initiation factor IF-2 OS=Burkholderia xenovorans (strain LB400)
Align length 30
Score (bit) 31.2
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950774|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_J11, 5'
         (648 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q140U6|IF2_BURXL Translation initiation factor IF-2 OS=Burkho...    31   4.9  

>sp|Q140U6|IF2_BURXL Translation initiation factor IF-2
           OS=Burkholderia xenovorans (strain LB400) GN=infB PE=3
           SV=1
          Length = 989

 Score = 31.2 bits (69), Expect = 4.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 610 DVADAVAKGWRGDPTGLKRGVDWNESFESP 521
           D +  V +GWRG P G  +  D N +F++P
Sbjct: 373 DTSGGVDRGWRGGPKGRGKHQDQNTTFQAP 402
tr_hit_id Q9C636
Definition tr|Q9C636|Q9C636_ARATH Putative uncharacterized protein F2G19.25 (Putative uncharacterized protein At1g45688) (Putative uncharacterized protein) OS=Arabidopsis thaliana
Align length 36
Score (bit) 58.9
E-value 3.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950774|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_J11, 5'
         (648 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9C636|Q9C636_ARATH Putative uncharacterized protein F2G19.25...    59   3e-07
tr|Q3ECW4|Q3ECW4_ARATH Uncharacterized protein At1g45688.2 OS=Ar...    59   3e-07
tr|A7NTY0|A7NTY0_VITVI Chromosome chr18 scaffold_1, whole genome...    59   3e-07
tr|Q9ST88|Q9ST88_ORYSA CAA30379.1 protein OS=Oryza sativa GN=q30...    56   2e-06
tr|Q7XST6|Q7XST6_ORYSJ cDNA clone:006-203-A12, full insert seque...    56   2e-06
tr|Q0J8S7|Q0J8S7_ORYSJ Os04g0689500 protein (Fragment) OS=Oryza ...    56   2e-06
tr|Q00RM8|Q00RM8_ORYSA H0814G11.12 protein OS=Oryza sativa GN=H0...    56   2e-06
tr|B8ARU8|B8ARU8_ORYSI Putative uncharacterized protein OS=Oryza...    56   2e-06
tr|A3AYW3|A3AYW3_ORYSJ Putative uncharacterized protein OS=Oryza...    56   2e-06
tr|Q9FMN3|Q9FMN3_ARATH Emb|CAB53482.1 (Putative uncharacterized ...    54   6e-06
tr|Q84VY4|Q84VY4_ARATH At5g42860 OS=Arabidopsis thaliana PE=2 SV=1     54   6e-06
tr|A7PLB2|A7PLB2_VITVI Chromosome chr7 scaffold_20, whole genome...    53   2e-05
tr|A7P799|A7P799_VITVI Chromosome chr9 scaffold_7, whole genome ...    48   6e-04
tr|Q5WA73|Q5WA73_ORYSJ cDNA clone:001-008-A10, full insert seque...    47   0.001
tr|Q0DEB4|Q0DEB4_ORYSJ Os06g0163300 protein (Fragment) OS=Oryza ...    47   0.001
tr|B8B378|B8B378_ORYSI Putative uncharacterized protein OS=Oryza...    47   0.001
tr|B6U4P1|B6U4P1_MAIZE Putative uncharacterized protein OS=Zea m...    47   0.001
tr|B6T7A7|B6T7A7_MAIZE Putative uncharacterized protein OS=Zea m...    47   0.001
tr|A3B8N6|A3B8N6_ORYSJ Putative uncharacterized protein OS=Oryza...    47   0.001
tr|B6TDG9|B6TDG9_MAIZE Harpin-induced protein OS=Zea mays PE=2 SV=1    46   0.002
tr|B8AB00|B8AB00_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.008
tr|B4FKP2|B4FKP2_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.024
tr|B4F942|B4F942_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.024
tr|B6TEA2|B6TEA2_MAIZE Harpin-induced protein OS=Zea mays PE=2 SV=1    42   0.032
tr|Q5N7Z3|Q5N7Z3_ORYSJ cDNA clone:002-125-E07, full insert seque...    39   0.21 
tr|A2ZQX7|A2ZQX7_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.21 
tr|A9SVZ9|A9SVZ9_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.60 
tr|A9S656|A9S656_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.79 
tr|A7PEN7|A7PEN7_VITVI Chromosome chr11 scaffold_13, whole genom...    37   1.0  
tr|Q9LV42|Q9LV42_ARATH Emb|CAB53482.1 OS=Arabidopsis thaliana PE...    35   3.9  

>tr|Q9C636|Q9C636_ARATH Putative uncharacterized protein F2G19.25
           (Putative uncharacterized protein At1g45688) (Putative
           uncharacterized protein) OS=Arabidopsis thaliana
           GN=At1g45688 PE=1 SV=1
          Length = 342

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 26/36 (72%), Positives = 29/36 (80%)
 Frame = +3

Query: 477 PAYYVQSPSRDSHDGGDSKLSFQSTPLLSPVGSPLH 584
           P YYVQSPSRDSHDG  +  SF STP+LSP+GSP H
Sbjct: 24  PVYYVQSPSRDSHDGEKTATSFHSTPVLSPMGSPPH 59


>tr|Q3ECW4|Q3ECW4_ARATH Uncharacterized protein At1g45688.2
           OS=Arabidopsis thaliana GN=At1g45688 PE=4 SV=1
          Length = 248

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 26/36 (72%), Positives = 29/36 (80%)
 Frame = +3

Query: 477 PAYYVQSPSRDSHDGGDSKLSFQSTPLLSPVGSPLH 584
           P YYVQSPSRDSHDG  +  SF STP+LSP+GSP H
Sbjct: 24  PVYYVQSPSRDSHDGEKTATSFHSTPVLSPMGSPPH 59


>tr|A7NTY0|A7NTY0_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014839001
           PE=4 SV=1
          Length = 103

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 26/36 (72%), Positives = 29/36 (80%)
 Frame = +3

Query: 477 PAYYVQSPSRDSHDGGDSKLSFQSTPLLSPVGSPLH 584
           P YYVQSPSRDSHDG  +  SF STP+LSP+GSP H
Sbjct: 24  PVYYVQSPSRDSHDGEKTTTSFHSTPVLSPMGSPPH 59


>tr|Q9ST88|Q9ST88_ORYSA CAA30379.1 protein OS=Oryza sativa
           GN=q3037.9 PE=4 SV=1
          Length = 835

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 25/36 (69%), Positives = 27/36 (75%)
 Frame = +3

Query: 477 PAYYVQSPSRDSHDGGDSKLSFQSTPLLSPVGSPLH 584
           P YYVQSPSRDSHDG  +  S  STP LSP+GSP H
Sbjct: 548 PVYYVQSPSRDSHDGEKTATSVHSTPALSPMGSPRH 583


>tr|Q7XST6|Q7XST6_ORYSJ cDNA clone:006-203-A12, full insert sequence
           OS=Oryza sativa subsp. japonica GN=OSJNBa0039K24.20 PE=2
           SV=2
          Length = 315

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 25/36 (69%), Positives = 27/36 (75%)
 Frame = +3

Query: 477 PAYYVQSPSRDSHDGGDSKLSFQSTPLLSPVGSPLH 584
           P YYVQSPSRDSHDG  +  S  STP LSP+GSP H
Sbjct: 28  PVYYVQSPSRDSHDGEKTATSVHSTPALSPMGSPRH 63


>tr|Q0J8S7|Q0J8S7_ORYSJ Os04g0689500 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os04g0689500 PE=4 SV=1
          Length = 348

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 25/36 (69%), Positives = 27/36 (75%)
 Frame = +3

Query: 477 PAYYVQSPSRDSHDGGDSKLSFQSTPLLSPVGSPLH 584
           P YYVQSPSRDSHDG  +  S  STP LSP+GSP H
Sbjct: 61  PVYYVQSPSRDSHDGEKTATSVHSTPALSPMGSPRH 96


>tr|Q00RM8|Q00RM8_ORYSA H0814G11.12 protein OS=Oryza sativa
           GN=H0814G11.12 PE=4 SV=1
          Length = 975

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 25/36 (69%), Positives = 27/36 (75%)
 Frame = +3

Query: 477 PAYYVQSPSRDSHDGGDSKLSFQSTPLLSPVGSPLH 584
           P YYVQSPSRDSHDG  +  S  STP LSP+GSP H
Sbjct: 688 PVYYVQSPSRDSHDGEKTATSVHSTPALSPMGSPRH 723


>tr|B8ARU8|B8ARU8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18024 PE=4 SV=1
          Length = 315

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 25/36 (69%), Positives = 27/36 (75%)
 Frame = +3

Query: 477 PAYYVQSPSRDSHDGGDSKLSFQSTPLLSPVGSPLH 584
           P YYVQSPSRDSHDG  +  S  STP LSP+GSP H
Sbjct: 28  PVYYVQSPSRDSHDGEKTATSVHSTPALSPMGSPRH 63


>tr|A3AYW3|A3AYW3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_015985 PE=4 SV=1
          Length = 988

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 25/36 (69%), Positives = 27/36 (75%)
 Frame = +3

Query: 477 PAYYVQSPSRDSHDGGDSKLSFQSTPLLSPVGSPLH 584
           P YYVQSPSRDSHDG  +  S  STP LSP+GSP H
Sbjct: 701 PVYYVQSPSRDSHDGEKTATSVHSTPALSPMGSPRH 736


>tr|Q9FMN3|Q9FMN3_ARATH Emb|CAB53482.1 (Putative uncharacterized
           protein At5g42860) OS=Arabidopsis thaliana GN=At5g42860
           PE=2 SV=1
          Length = 320

 Score = 54.3 bits (129), Expect = 6e-06
 Identities = 26/37 (70%), Positives = 30/37 (81%), Gaps = 1/37 (2%)
 Frame = +3

Query: 477 PAYYVQSPSRDSHDGGDSKLSFQSTPLL-SPVGSPLH 584
           PAY+VQSPSRDSHDG  +  SF STP+L SP+GSP H
Sbjct: 24  PAYFVQSPSRDSHDGEKTATSFHSTPVLTSPMGSPPH 60