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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950779
Clone id TST38A01NGRL0009_J16
Library
Length 659
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_J16. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CTCCTTTGGAAGGAGAAAGAATTGCAGGCGAAGTGTGATTGTTTGCACTGCTGCAAACAC
CGTTCTAGACCGTTGCAATGATGCTGACGATGCCGTTTCTTCAACAAAATCACAGTGGAC
AGAAGAAGTGTTTTCTTCACTGCAACGCTCTCTTCTGGAAAGCCAGTGGGCTTTGCAATC
TGCTCAGAGTAATCTATGCAAAGTTGATGAAACCGCTAGTTTGGAGAACGTCTCTGCCAG
AAATAGCGAGGAGAGCGTAAACTTGTGCACACACTCACAGCAATTGGGTAGTTCTGTGGT
GAGGTCTGGCCAGGCTTCTGCAAGACGTCGTCGGTTAACAGCCAGGTCAAGAGCACATGC
AATGGGTGGCAACAGTGGCTTTGATAACTGCAAAGCTTTGAATGTTCCAGTCAGTAAAAA
GAGAGGCAAGGTAAAACATGATCCTGTGCGAAGTTTCGTATCTACATACCTCAAATCAAC
GAATGGGTGTGTAATGCTAACCAAGGATCAAGAGAGGGGTTATACAAAGCAGATGAGAGT
TTGCCAAAGTCTTGAGAAGGCCAAGCGCGAGTTAAAGAAAAAACTTGGTTATGATCCATC
GTACGAGCTTTGGGCACAGTCTGTCAGTATGTCTACGGCAGAGCTCCTTTCTATGGTCA
■■Homology search results ■■ -
sp_hit_id Q9C0D7
Definition sp|Q9C0D7|ZC12C_HUMAN Zinc finger CCCH domain-containing protein 12C OS=Homo sapiens
Align length 40
Score (bit) 32.3
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950779|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_J16, 5'
         (659 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9C0D7|ZC12C_HUMAN Zinc finger CCCH domain-containing protein...    32   2.3  
sp|O14011|CWF8_SCHPO Cell cycle control protein cwf8 OS=Schizosa...    32   3.9  
sp|O25926|CLPX_HELPY ATP-dependent Clp protease ATP-binding subu...    31   6.6  
sp|Q9ZJL8|CLPX_HELPJ ATP-dependent Clp protease ATP-binding subu...    31   6.6  

>sp|Q9C0D7|ZC12C_HUMAN Zinc finger CCCH domain-containing protein
           12C OS=Homo sapiens GN=ZC3H12C PE=1 SV=2
          Length = 883

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +2

Query: 191 NLCKVDETASLENVSARNSEESVNLCTHSQQLGSSVVRSG 310
           N+ K ++ AS EN S+ +SEE+ N    S+QLGS  V  G
Sbjct: 72  NVGKDEKEASEENASSGDSEENTNSDHESEQLGSISVEPG 111


>sp|O14011|CWF8_SCHPO Cell cycle control protein cwf8
           OS=Schizosaccharomyces pombe GN=cwf8 PE=1 SV=1
          Length = 488

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
 Frame = +2

Query: 92  AVSSTKSQWTEEVFSSLQRSLLESQWALQSAQSNLCKVDETASLENVSARNS-------- 247
           ++ ST  +  +E+ S  +R+ L+ +WA   A S L +   +  LEN+   ++        
Sbjct: 161 SLRSTVEKTFQELSSKRKRTKLQPKWATDDAVSQLLQATPSTILENLETESTTSFFPSPE 220

Query: 248 EESVNLCTHSQQL 286
             S  LC H  +L
Sbjct: 221 NSSFVLCLHKDEL 233


>sp|O25926|CLPX_HELPY ATP-dependent Clp protease ATP-binding subunit
           clpX OS=Helicobacter pylori GN=clpX PE=1 SV=1
          Length = 446

 Score = 30.8 bits (68), Expect = 6.6
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 89  DAVSSTKSQWT-EEVFSSLQRSLLESQWALQSAQSNLCKVDETASLENVSARNS 247
           DA S T++ +  E+V + L R L  S W +Q AQ  +  +DE   +  +S   S
Sbjct: 174 DATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRS 227


>sp|Q9ZJL8|CLPX_HELPJ ATP-dependent Clp protease ATP-binding subunit
           clpX OS=Helicobacter pylori J99 GN=clpX PE=3 SV=1
          Length = 452

 Score = 30.8 bits (68), Expect = 6.6
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 89  DAVSSTKSQWT-EEVFSSLQRSLLESQWALQSAQSNLCKVDETASLENVSARNS 247
           DA S T++ +  E+V + L R L  S W +Q AQ  +  +DE   +  +S   S
Sbjct: 180 DATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSEHRS 233
tr_hit_id Q93V67
Definition tr|Q93V67|Q93V67_PHYPA PpSIG1 OS=Physcomitrella patens
Align length 74
Score (bit) 43.5
E-value 0.012
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950779|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_J16, 5'
         (659 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q93V67|Q93V67_PHYPA PpSIG1 OS=Physcomitrella patens GN=Sig1 P...    44   0.012
tr|A9SW01|A9SW01_PHYPA Plastid sigma factor SIG1 OS=Physcomitrel...    44   0.012
tr|B4VTM7|B4VTM7_9CYAN RNA polymerase sigma factor, cyanobacteri...    40   0.13 
tr|Q3MBX2|Q3MBX2_ANAVT Sigma 28 (Flagella/Sporulation) OS=Anabae...    37   1.1  
tr|Q9KHE8|Q9KHE8_ANASP Group 2 sigma 70-type sigma factor D OS=A...    37   1.4  
tr|B0C249|B0C249_ACAM1 RNA polymerase sigma-70 factor OS=Acaryoc...    37   1.4  
tr|B1XQ38|B1XQ38_SYNP2 Sigma factor OS=Synechococcus sp. (strain...    35   3.1  
tr|B5VZJ5|B5VZJ5_SPIMA RNA polymerase, sigma 70 subunit, RpoD fa...    35   3.1  
tr|A0ZFS4|A0ZFS4_NODSP RNA polymerase sigma factor OS=Nodularia ...    35   4.1  
tr|A0YTG7|A0YTG7_9CYAN RNA polymerase sigma factor OS=Lyngbya sp...    35   4.1  
tr|B4LKQ6|B4LKQ6_DROVI GJ22233 OS=Drosophila virilis GN=GJ22233 ...    35   4.1  
tr|B7K407|B7K407_SYNP8 RNA polymerase, sigma 70 subunit, RpoD su...    35   5.3  
tr|B4BYC5|B4BYC5_9CHRO RNA polymerase, sigma 70 subunit, RpoD fa...    35   5.3  
tr|A7PHG5|A7PHG5_VITVI Chromosome chr17 scaffold_16, whole genom...    35   5.3  
tr|P96034|P96034_SYNSP Sigma factor OS=Synechococcus sp. GN=sigD...    34   7.0  
tr|A8YCV8|A8YCV8_MICAE RNA polymerase sigma factor OS=Microcysti...    34   7.0  
tr|B4QS25|B4QS25_DROSI GD19356 OS=Drosophila simulans GN=GD19356...    34   7.0  
tr|B4PPN9|B4PPN9_DROYA GE25667 OS=Drosophila yakuba GN=GE25667 P...    34   7.0  
tr|B4IIB5|B4IIB5_DROSE GM23117 OS=Drosophila sechellia GN=GM2311...    34   7.0  

>tr|Q93V67|Q93V67_PHYPA PpSIG1 OS=Physcomitrella patens GN=Sig1 PE=2
           SV=1
          Length = 677

 Score = 43.5 bits (101), Expect = 0.012
 Identities = 22/74 (29%), Positives = 40/74 (54%)
 Frame = +2

Query: 428 KVKHDPVRSFVSTYLKSTNGCVMLTKDQERGYTKQMRVCQSXXXXXXXXXXXXGYDPSYE 607
           +VK D V+ +++TYL+      +LTK +E   +K++R+  +            GY PS E
Sbjct: 347 RVKFDGVQDYLTTYLREITKINLLTKQEEVFLSKKLRIGLNLLEERKKLAAELGYVPSNE 406

Query: 608 LWAQSVSMSTAELL 649
            WA  +++S  +L+
Sbjct: 407 EWAPHMNLSVGDLV 420


>tr|A9SW01|A9SW01_PHYPA Plastid sigma factor SIG1 OS=Physcomitrella
           patens subsp. patens GN=PpSig1 PE=4 SV=1
          Length = 677

 Score = 43.5 bits (101), Expect = 0.012
 Identities = 22/74 (29%), Positives = 40/74 (54%)
 Frame = +2

Query: 428 KVKHDPVRSFVSTYLKSTNGCVMLTKDQERGYTKQMRVCQSXXXXXXXXXXXXGYDPSYE 607
           +VK D V+ +++TYL+      +LTK +E   +K++R+  +            GY PS E
Sbjct: 347 RVKFDGVQDYLTTYLREITKINLLTKQEEVFLSKKLRIGLNLLEERKKLAAELGYVPSNE 406

Query: 608 LWAQSVSMSTAELL 649
            WA  +++S  +L+
Sbjct: 407 EWAPHMNLSVGDLV 420


>tr|B4VTM7|B4VTM7_9CYAN RNA polymerase sigma factor, cyanobacterial
           RpoD-like family OS=Microcoleus chthonoplastes PCC 7420
           GN=MC7420_6056 PE=4 SV=1
          Length = 331

 Score = 40.0 bits (92), Expect = 0.13
 Identities = 25/87 (28%), Positives = 43/87 (49%)
 Frame = +2

Query: 398 LNVPVSKKRGKVKHDPVRSFVSTYLKSTNGCVMLTKDQERGYTKQMRVCQSXXXXXXXXX 577
           +++ ++ K  +   D VR    TYL+      +LT +QE  Y KQ++   +         
Sbjct: 7   IDIAIAMKTAQTSTDLVR----TYLQEIGRVPLLTHEQEILYGKQVQRLNALEQTKESLF 62

Query: 578 XXXGYDPSYELWAQSVSMSTAELLSMV 658
              GY+P+   WA++ S+S AEL S +
Sbjct: 63  EQLGYEPTLCEWAKASSLSEAELQSCI 89


>tr|Q3MBX2|Q3MBX2_ANAVT Sigma 28 (Flagella/Sporulation) OS=Anabaena
           variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_1892
           PE=4 SV=1
          Length = 332

 Score = 37.0 bits (84), Expect = 1.1
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +2

Query: 413 SKKRGKVKHDPVRS-FVSTYLKSTNGCVMLTKDQERGYTKQMRVCQSXXXXXXXXXXXXG 589
           S K   +K  P  +  V TYL+      +L+ ++E  Y KQ++   +            G
Sbjct: 9   SPKSSAMKTAPTATDLVRTYLREIGRVPLLSHEEEIRYGKQVQRSTTLQEVREELATQLG 68

Query: 590 YDPSYELWAQSVSMSTAELLSMV 658
            +PS E WA++ ++++A+LL  +
Sbjct: 69  REPSIEEWAKAANINSADLLGAI 91


>tr|Q9KHE8|Q9KHE8_ANASP Group 2 sigma 70-type sigma factor D
           OS=Anabaena sp. (strain PCC 7120) GN=sigD PE=4 SV=1
          Length = 332

 Score = 36.6 bits (83), Expect = 1.4
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +2

Query: 413 SKKRGKVKHDPVRS-FVSTYLKSTNGCVMLTKDQERGYTKQMRVCQSXXXXXXXXXXXXG 589
           S K   +K  P  +  V TYL+      +L+ ++E  Y KQ++   +            G
Sbjct: 9   SPKSSAMKTAPTATDLVRTYLREIGRVPLLSHEEEIRYGKQVQRSTTLQEMREELATQSG 68

Query: 590 YDPSYELWAQSVSMSTAELLSMV 658
            +PS E WA++ +++ A+LL  +
Sbjct: 69  REPSVEEWAKAANLNPADLLEAI 91


>tr|B0C249|B0C249_ACAM1 RNA polymerase sigma-70 factor
           OS=Acaryochloris marina (strain MBIC 11017) GN=rpoD PE=4
           SV=1
          Length = 327

 Score = 36.6 bits (83), Expect = 1.4
 Identities = 19/76 (25%), Positives = 34/76 (44%)
 Frame = +2

Query: 419 KRGKVKHDPVRSFVSTYLKSTNGCVMLTKDQERGYTKQMRVCQSXXXXXXXXXXXXGYDP 598
           K+  +   P    V TYL       +LT ++E  + KQ++   +            G +P
Sbjct: 7   KQQAISVSPTTDMVRTYLHEIGRVPLLTHEEEIVFGKQVQAMMALLDLQKTVMDELGREP 66

Query: 599 SYELWAQSVSMSTAEL 646
           S E WA+  ++S ++L
Sbjct: 67  SLEEWAEKANLSPSQL 82


>tr|B1XQ38|B1XQ38_SYNP2 Sigma factor OS=Synechococcus sp. (strain
           ATCC 27264 / PCC 7002 / PR-6) GN=rpoD PE=4 SV=1
          Length = 318

 Score = 35.4 bits (80), Expect = 3.1
 Identities = 22/76 (28%), Positives = 36/76 (47%)
 Frame = +2

Query: 419 KRGKVKHDPVRSFVSTYLKSTNGCVMLTKDQERGYTKQMRVCQSXXXXXXXXXXXXGYDP 598
           K  K   DPVR    TYLK      +LT ++E  Y+++++   +              +P
Sbjct: 2   KTAKYSADPVR----TYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEP 57

Query: 599 SYELWAQSVSMSTAEL 646
           S + WAQ+ ++S  EL
Sbjct: 58  SLKEWAQAANLSQREL 73


>tr|B5VZJ5|B5VZJ5_SPIMA RNA polymerase, sigma 70 subunit, RpoD
           family OS=Arthrospira maxima CS-328 GN=AmaxDRAFT_1997
           PE=4 SV=1
          Length = 331

 Score = 35.4 bits (80), Expect = 3.1
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +2

Query: 458 VSTYLKSTNGCVMLTKDQERGYTKQMRVCQSXXXXXXXXXXXXGYDPSYELWAQSVSMST 637
           V  YL+      +LT +QE  Y KQ++                GY+P+   WA+ V++S 
Sbjct: 24  VRAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSV 83

Query: 638 AEL 646
           A+L
Sbjct: 84  AQL 86


>tr|A0ZFS4|A0ZFS4_NODSP RNA polymerase sigma factor OS=Nodularia
           spumigena CCY 9414 GN=N9414_09781 PE=4 SV=1
          Length = 332

 Score = 35.0 bits (79), Expect = 4.1
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +2

Query: 458 VSTYLKSTNGCVMLTKDQERGYTKQMRVCQSXXXXXXXXXXXXGYDPSYELWAQSVSMST 637
           V TYL+      +LT ++E  Y KQ++  +             G +PS E WA + ++  
Sbjct: 25  VRTYLREIGRVPLLTHEEEIQYGKQVQFSRILHEVRDSLINQIGREPSLEEWALAANLEV 84

Query: 638 AEL 646
           AEL
Sbjct: 85  AEL 87


>tr|A0YTG7|A0YTG7_9CYAN RNA polymerase sigma factor OS=Lyngbya sp.
           PCC 8106 GN=L8106_08216 PE=4 SV=1
          Length = 319

 Score = 35.0 bits (79), Expect = 4.1
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +2

Query: 458 VSTYLKSTNGCVMLTKDQERGYTKQMRVCQSXXXXXXXXXXXXGYDPSYELWAQSVSMST 637
           V TYL+      +LT +QE  Y KQ++                G +PSY  WA++  +S 
Sbjct: 12  VRTYLREIGRVPLLTHEQEILYGKQVQQSAILQEGKEKLAKRLGREPSYAEWAENAGVSL 71

Query: 638 AEL 646
            EL
Sbjct: 72  KEL 74