DK950780 |
Clone id |
TST38A01NGRL0009_J17 |
Library |
TST38 |
Length |
646 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_J17. 5' end sequence. |
Accession |
DK950780 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
AAATTGTCGCAGACAAAGAGAGACATGCCCTACATTCCGCCACACCTGCGCTCCTCTGCT GCTTCAGCAGCAGCATCAGCTTCATCTCCATCGCCTTCTTCATCGGGTCCTCCTCGCCGC ACTACTTCAGGTGATTGGGATAACAACAGCAGCAACAACAACTACTTTGGGGGAAGCAGG GATTCATACGTCTCACGCTACTCAAATCCCAGAAATAGCAGAGATTTGTCATCATCATTG AGTTCATCAACAACTTCTTCCTTTCGAGCAGGCAGTGGAAGTGCAGGGGCACCTCAGGCG AATGGTACAGGCCGGCGAGGTGATACCCGAAGTTTAGGTCCTCCTGAAACTATTTGGTTT TCATGGCAGCCCTCTCACCCCACCCTTCAGCTGCAGCAGGAGCAGATAAAAAAGAAGAGG GCGCGATTGAATGTTGATGTGGAGATTACTGCAGGGACACCTCCTGCCCCTGCACCAGTT GAGACTTTTGAAGATATGTGTCTTGAACACAGTATTATGAAAGACATTGCTTTTCACCAG TACACCACACCCACACCTATTCAGGCACAGGCAATGCCTGTTGCTTTGAGTGGAAGAGAC CTACTTGGCTGTGCAGAGACAGGAAGTGGTAAAACTGCGGCTTTTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q1DJF0 |
Definition |
sp|Q1DJF0|DED1_COCIM ATP-dependent RNA helicase DED1 OS=Coccidioides immitis |
Align length |
218 |
Score (bit) |
73.6 |
E-value |
9.0e-13 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SU89 |
Definition |
tr|A9SU89|A9SU89_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
209 |
Score (bit) |
175.0 |
E-value |
2.0e-42 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950780|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0009_J17, 5' (646 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SU89|A9SU89_PHYPA Predicted protein OS=Physcomitrella paten... 175 2e-42 tr|A9U4P2|A9U4P2_PHYPA Predicted protein OS=Physcomitrella paten... 164 3e-39 tr|A7NY03|A7NY03_VITVI Chromosome chr6 scaffold_3, whole genome ... 138 3e-31 tr|A5AED2|A5AED2_VITVI Putative uncharacterized protein OS=Vitis... 138 3e-31 tr|Q9LKL6|Q9LKL6_PEA DEAD box protein P68 OS=Pisum sativum GN=P6... 131 4e-29 tr|Q012X8|Q012X8_OSTTA DEAD box protein P68 (ISS) OS=Ostreococcu... 115 2e-24 tr|A8J7F9|A8J7F9_CHLRE Predicted protein OS=Chlamydomonas reinha... 112 1e-23 tr|A4S1R1|A4S1R1_OSTLU Predicted protein (Fragment) OS=Ostreococ... 100 1e-19 tr|B4LHL4|B4LHL4_DROVI GJ13322 OS=Drosophila virilis GN=GJ13322 ... 83 1e-14 tr|B4KWB2|B4KWB2_DROMO GI12051 OS=Drosophila mojavensis GN=GI120... 82 3e-14 tr|B4K178|B4K178_DROGR GH23229 OS=Drosophila grimshawi GN=GH2322... 82 4e-14 tr|B4IZI9|B4IZI9_DROGR GH17046 OS=Drosophila grimshawi GN=GH1704... 82 4e-14 tr|Q7QM99|Q7QM99_ANOGA AGAP012523-PA OS=Anopheles gambiae str. P... 81 6e-14 tr|Q17LN4|Q17LN4_AEDAE DEAD box ATP-dependent RNA helicase OS=Ae... 80 1e-13 tr|B4PEH7|B4PEH7_DROYA GE20258 OS=Drosophila yakuba GN=GE20258 P... 79 2e-13 tr|B4NT22|B4NT22_DROSI GD17585 OS=Drosophila simulans GN=GD17585... 79 2e-13 tr|B4HDR9|B4HDR9_DROSE GM24798 OS=Drosophila sechellia GN=GM2479... 79 2e-13 tr|B3NCN4|B3NCN4_DROER GG13958 OS=Drosophila erecta GN=GG13958 P... 79 2e-13 tr|Q9VTC1|Q9VTC1_DROME CG6418 OS=Drosophila melanogaster GN=CG64... 78 4e-13 tr|A7SM49|A7SM49_NEMVE Predicted protein OS=Nematostella vectens... 78 4e-13 tr|B3M5L4|B3M5L4_DROAN GF23818 OS=Drosophila ananassae GN=GF2381... 77 1e-12 tr|B3M8Y3|B3M8Y3_DROAN GF24750 OS=Drosophila ananassae GN=GF2475... 75 3e-12 tr|A9I8K3|A9I8K3_BORPD Putative ATP-dependent RNA helicase OS=Bo... 75 3e-12 tr|Q2LZX7|Q2LZX7_DROPS GA19578 OS=Drosophila pseudoobscura pseud... 74 6e-12 tr|B4H6R6|B4H6R6_DROPE GL21821 OS=Drosophila persimilis GN=GL218... 74 6e-12 tr|Q7ZXJ0|Q7ZXJ0_XENLA Pl10-prov protein OS=Xenopus laevis GN=dd... 74 8e-12 tr|Q4SU67|Q4SU67_TETNG Chromosome undetermined SCAF14003, whole ... 74 8e-12 tr|B7PDC4|B7PDC4_IXOSC ATP-dependent RNA helicase, putative (Fra... 74 8e-12 tr|Q3MSN6|Q3MSN6_RANLE Pl10-related protein OS=Rana lessonae GN=... 74 1e-11 tr|Q7W4V8|Q7W4V8_BORPA Putative ATP-dependent RNA helicase OS=Bo... 74 1e-11
>tr|A9SU89|A9SU89_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_135358 PE=3 SV=1 Length = 582
Score = 175 bits (443), Expect = 2e-42 Identities = 98/209 (46%), Positives = 114/209 (54%), Gaps = 2/209 (0%) Frame = +1
Query: 25 MPYIPPHLRXXXXXXXXXXXXXXXXXXGPPRRTTSGDWDXXXXXXXYFGGSRDSYVSRYS 204 MPY+PPHLR G RR GG RDSY + Sbjct: 1 MPYVPPHLRAGAASAGAAPASG-----GAARRD---------------GGGRDSYGGSFG 40
Query: 205 NPRNXXXXXXXXXXXXXXXXXXXXXXXGAPQANGTGRRGD--TRSLGPPETIWFSWQPSH 378 G+ +++G + G R G PE +W +WQPS Sbjct: 41 ASAGARRSSSEVSFGNGGSSYGNGYGQGSRESSGGSKEGSGGVRGAGHPEVVWATWQPSE 100
Query: 379 PTLQLQQEQIKKKRARLNVDVEITAGTPPAPAPVETFEDMCLEHSIMKDIAFHQYTTPTP 558 +LQ EQI + RARLNVDVEI G+ PAPAP+E+FEDMCL SIMKD+ FH YTTPTP Sbjct: 101 RVQKLQPEQIAEVRARLNVDVEIATGSEPAPAPIESFEDMCLHLSIMKDVTFHNYTTPTP 160
Query: 559 IQAQAMPVALSGRDLLGCAETGSGKTAAF 645 IQAQA+PVALSGRDLLGCAETGSGKTAAF Sbjct: 161 IQAQALPVALSGRDLLGCAETGSGKTAAF 189
>tr|A9U4P2|A9U4P2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_173651 PE=3 SV=1 Length = 538
Score = 164 bits (416), Expect = 3e-39 Identities = 80/120 (66%), Positives = 91/120 (75%) Frame = +1
Query: 286 GAPQANGTGRRGDTRSLGPPETIWFSWQPSHPTLQLQQEQIKKKRARLNVDVEITAGTPP 465 GA ++ G R +G PE +W W+PS +L EQI + RARLNVDVEIT T P Sbjct: 45 GARRSASEGEGSAARGVGHPEVVWPDWKPSERVRKLLPEQIAEVRARLNVDVEITPDTEP 104
Query: 466 APAPVETFEDMCLEHSIMKDIAFHQYTTPTPIQAQAMPVALSGRDLLGCAETGSGKTAAF 645 APAP+E+FEDMCL SIMKD+ FH YTTPTPIQAQA+PVALSGRDLLGCAETGSGKTAAF Sbjct: 105 APAPIESFEDMCLHLSIMKDVTFHNYTTPTPIQAQALPVALSGRDLLGCAETGSGKTAAF 164
>tr|A7NY03|A7NY03_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00023931001 PE=3 SV=1 Length = 568
Score = 138 bits (347), Expect = 3e-31 Identities = 68/106 (64%), Positives = 80/106 (75%) Frame = +1
Query: 328 RSLGPPETIWFSWQPSHPTLQLQQEQIKKKRARLNVDVEITAGTPPAPAPVETFEDMCLE 507 R+ PE ++ W+PS ++ EQI++ R RLNVDV + PPAPAP+E+F DM L Sbjct: 72 RTPSVPEPVFPQWKPSDRVFLMKPEQIEEVRLRLNVDVTVAPDLPPAPAPIESFTDMGLH 131
Query: 508 HSIMKDIAFHQYTTPTPIQAQAMPVALSGRDLLGCAETGSGKTAAF 645 SIMKDI FH+YT PT IQAQAMPVALSGRDLLGCAETGSGKTAAF Sbjct: 132 QSIMKDITFHEYTRPTFIQAQAMPVALSGRDLLGCAETGSGKTAAF 177
>tr|A5AED2|A5AED2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009507 PE=3 SV=1 Length = 489
Score = 138 bits (347), Expect = 3e-31 Identities = 68/106 (64%), Positives = 80/106 (75%) Frame = +1
Query: 328 RSLGPPETIWFSWQPSHPTLQLQQEQIKKKRARLNVDVEITAGTPPAPAPVETFEDMCLE 507 R+ PE ++ W+PS ++ EQI++ R RLNVDV + PPAPAP+E+F DM L Sbjct: 72 RTPSVPEPVFPQWKPSDRVFXMKPEQIEEVRLRLNVDVTVAPDLPPAPAPIESFTDMGLH 131
Query: 508 HSIMKDIAFHQYTTPTPIQAQAMPVALSGRDLLGCAETGSGKTAAF 645 SIMKDI FH+YT PT IQAQAMPVALSGRDLLGCAETGSGKTAAF Sbjct: 132 QSIMKDIXFHEYTRPTFIQAQAMPVALSGRDLLGCAETGSGKTAAF 177
>tr|Q9LKL6|Q9LKL6_PEA DEAD box protein P68 OS=Pisum sativum GN=P68 PE=2 SV=1 Length = 622
Score = 131 bits (329), Expect = 4e-29 Identities = 66/121 (54%), Positives = 88/121 (72%), Gaps = 5/121 (4%) Frame = +1
Query: 298 ANGTGRRGDTRS-----LGPPETIWFSWQPSHPTLQLQQEQIKKKRARLNVDVEITAGTP 462 ANG+ R S + P+T++ +WQPS ++ +QI++ RLN+DV +++ + Sbjct: 53 ANGSRRTSAATSAISELVTVPDTVFPNWQPSERVSRMNPDQIEEV-VRLNLDVTVSSDST 111
Query: 463 PAPAPVETFEDMCLEHSIMKDIAFHQYTTPTPIQAQAMPVALSGRDLLGCAETGSGKTAA 642 AP P+E+F DMCL SIMKDIA+H+YT P+ IQAQAMP+ALSGRDLLGCAETGSGKTAA Sbjct: 112 AAPGPIESFNDMCLHPSIMKDIAYHEYTRPSSIQAQAMPIALSGRDLLGCAETGSGKTAA 171
Query: 643 F 645 F Sbjct: 172 F 172
>tr|Q012X8|Q012X8_OSTTA DEAD box protein P68 (ISS) OS=Ostreococcus tauri GN=Ot08g03140 PE=3 SV=1 Length = 571
Score = 115 bits (288), Expect = 2e-24 Identities = 59/116 (50%), Positives = 75/116 (64%) Frame = +1
Query: 298 ANGTGRRGDTRSLGPPETIWFSWQPSHPTLQLQQEQIKKKRARLNVDVEITAGTPPAPAP 477 A G GR G G ++ +W+PS L Q + R RL V V++ G P AP+ Sbjct: 50 ARGDGRGGGAARGGAHAPVFAAWRPSARAEALTTAQATEIRERLGVTVDVEDGEPEAPSA 109
Query: 478 VETFEDMCLEHSIMKDIAFHQYTTPTPIQAQAMPVALSGRDLLGCAETGSGKTAAF 645 +E+FEDM L+ I+ DI F +Y P+PIQAQA+PV LSGRD+LGCAETGSGKTAAF Sbjct: 110 IESFEDMELKRDILADIKFREYDKPSPIQAQAIPVILSGRDVLGCAETGSGKTAAF 165
>tr|A8J7F9|A8J7F9_CHLRE Predicted protein OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_131102 PE=3 SV=1 Length = 515
Score = 112 bits (281), Expect = 1e-23 Identities = 60/119 (50%), Positives = 79/119 (66%), Gaps = 2/119 (1%) Frame = +1
Query: 295 QANGTGRRGDTRSLG--PPETIWFSWQPSHPTLQLQQEQIKKKRARLNVDVEITAGTPPA 468 Q +G R G T+S P E ++ +WQP+ L L + I + R RL V VE T A Sbjct: 50 QGSGLPRTGSTQSFNRAPIEPVFNTWQPTSRVLSLSDDTIAEIRQRLKVTVEGTEDDKAA 109
Query: 469 PAPVETFEDMCLEHSIMKDIAFHQYTTPTPIQAQAMPVALSGRDLLGCAETGSGKTAAF 645 +P+E+F +M L +I+ DI H+Y TPTPIQAQ +P+ALSGRD+LGCAETGSGKTA+F Sbjct: 110 -SPIESFAEMNLHPNIVADIQHHKYETPTPIQAQGLPIALSGRDILGCAETGSGKTASF 167
>tr|A4S1R1|A4S1R1_OSTLU Predicted protein (Fragment) OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_1537 PE=3 SV=1 Length = 394
Score = 100 bits (248), Expect = 1e-19 Identities = 50/85 (58%), Positives = 60/85 (70%) Frame = +1
Query: 391 LQQEQIKKKRARLNVDVEITAGTPPAPAPVETFEDMCLEHSIMKDIAFHQYTTPTPIQAQ 570 L + Q + R RL V VEI G P+ +E+FEDM L IM DI + +Y P+PIQAQ Sbjct: 2 LTEAQTTEIRERLGVTVEIEEGEAAVPSAIESFEDMTLVRDIMADIRYREYDKPSPIQAQ 61
Query: 571 AMPVALSGRDLLGCAETGSGKTAAF 645 A+PV LSGRD+LGCAETGSGKTAAF Sbjct: 62 AIPVILSGRDVLGCAETGSGKTAAF 86
>tr|B4LHL4|B4LHL4_DROVI GJ13322 OS=Drosophila virilis GN=GJ13322 PE=4 SV=1 Length = 797
Score = 83.2 bits (204), Expect = 1e-14 Identities = 44/94 (46%), Positives = 60/94 (63%) Frame = +1
Query: 364 WQPSHPTLQLQQEQIKKKRARLNVDVEITAGTPPAPAPVETFEDMCLEHSIMKDIAFHQY 543 + P QL +EQ+++ R L V V +G P P PV +F + ++K + +Y Sbjct: 244 YTPHEDIAQLDEEQVRELRRTLGVKV---SGALP-PKPVSSFGHFGFDEQLLKSVRKAEY 299
Query: 544 TTPTPIQAQAMPVALSGRDLLGCAETGSGKTAAF 645 T PTPIQAQA+P ALSGRD++G A+TGSGKTAAF Sbjct: 300 TQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAF 333
>tr|B4KWB2|B4KWB2_DROMO GI12051 OS=Drosophila mojavensis GN=GI12051 PE=4 SV=1 Length = 797
Score = 82.0 bits (201), Expect = 3e-14 Identities = 44/94 (46%), Positives = 60/94 (63%) Frame = +1
Query: 364 WQPSHPTLQLQQEQIKKKRARLNVDVEITAGTPPAPAPVETFEDMCLEHSIMKDIAFHQY 543 + P QL +EQ+++ R L V V +G P P PV +F + ++K + +Y Sbjct: 240 YTPHEDIAQLNEEQVRELRHTLGVKV---SGAQP-PKPVTSFGHFGFDDQLLKAVRKAEY 295
Query: 544 TTPTPIQAQAMPVALSGRDLLGCAETGSGKTAAF 645 T PTPIQAQA+P ALSGRD++G A+TGSGKTAAF Sbjct: 296 TQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAF 329
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