DK950787 |
Clone id |
TST38A01NGRL0009_K02 |
Library |
TST38 |
Length |
638 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_K02. 5' end sequence. |
Accession |
DK950787 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
TTCAAAATTGACGTGCTGCATAAAGATGAAATAAACTCCTCCCTTGACAGTTTTTTTCCT AGTGCAGGTTTTCTTTACTGGATAAACCAGTCAGATGTTGAGAAGGCCTCACAGCTGCAG GAGCTATCGAATATCATACTTGGAATTGGTGTTTACAATAGAGCGAGAGACAACATCGGC AATGCCAATGATCCAATCTACTCTAGTTTTGAAAATGGAGCAAAAGCAATGGAGAAGAAT GTTAAAAATGAGGTTAACACTGTGCTAGAAAGGGGTGCTGCTTACAGAAAAGTCATTGAC ATGCATATCCATAGTTTGGGTATTCATCATGTCCTGGTGCAGCGTTTAAGGGACGAGCTT CATTATGATCTCCAGCTTTTCTCACTTCTGCAAGACCTTCAATGTGTTCTTACGGAGATG CATTCAACAATGAGCAAGTTATTGAAGCGCTTGCAAGAACTACTGCAGATTCTTTTTGCC ACCATTGGTTCAGAGACTTGCGTTCCAAATGAGCTGGTTTTCCCAGACTTTCGAAACATT GGATTACTTCAGAAAAGGGCCTTAACAGAACTCAGGAAGCTCATGGCTCAAAGTAGAGTA GCAGAGGAGCTACTCGCCCTTTCCACTAAACCTGGGTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q29RL1 |
Definition |
sp|Q29RL1|CF165_BOVIN UPF0704 protein C6orf165 homolog OS=Bos taurus |
Align length |
169 |
Score (bit) |
42.0 |
E-value |
0.003 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RVN8 |
Definition |
tr|A9RVN8|A9RVN8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
155 |
Score (bit) |
46.6 |
E-value |
0.001 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950787|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0009_K02, 5' (638 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RVN8|A9RVN8_PHYPA Predicted protein OS=Physcomitrella paten... 47 0.001 tr|Q5A310|Q5A310_CANAL Putative uncharacterized protein ISW2 OS=... 42 0.031 tr|A5DZB7|A5DZB7_LODEL Chromatin remodelling complex ATPase chai... 42 0.041 tr|Q23H79|Q23H79_TETTH Putative uncharacterized protein OS=Tetra... 40 0.091 tr|Q95K32|Q95K32_MACFA Putative uncharacterized protein OS=Macac... 39 0.27 tr|Q95JX1|Q95JX1_MACFA Putative uncharacterized protein OS=Macac... 39 0.27 tr|A8K969|A8K969_HUMAN cDNA FLJ76955 OS=Homo sapiens PE=2 SV=1 39 0.35 tr|A8ITF8|A8ITF8_CHLRE Flagellar associated protein (Fragment) O... 37 1.0 tr|A2EYH1|A2EYH1_TRIVA Putative uncharacterized protein OS=Trich... 35 2.9 tr|B3S356|B3S356_TRIAD Putative uncharacterized protein OS=Trich... 35 3.8 tr|A3LQ23|A3LQ23_PICST Chromatin remodeling complex Adenosinetri... 35 3.8 tr|Q0VFA1|Q0VFA1_XENTR LOC779532 protein (Fragment) OS=Xenopus t... 34 6.5 tr|Q245Q6|Q245Q6_TETTH Putative uncharacterized protein OS=Tetra... 34 8.6
>tr|A9RVN8|A9RVN8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_71244 PE=4 SV=1 Length = 926
Score = 46.6 bits (109), Expect = 0.001 Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 13/155 (8%) Frame = +1
Query: 208 FENGAKAMEKNVKNEVNTVLERGAAYRKVIDMHIHSLGIHHVLVQRLRDELHYXXXXXXX 387 +E+ A + +++ V + AY + + +G++H+ ++RLRDE+ Y Sbjct: 411 YEHDAVELGCAIQDTFEIVNTKIRAYSSSVMKYYQDMGVNHIFIKRLRDEISYQFQVSAY 470
Query: 388 XXXXXC-------------VLTEMHSTMSXXXXXXXXXXXXXFATIGSETCVPNELVFPD 528 L E + IGS +P+++VFP+ Sbjct: 471 YDILSLNANVALYLEPVREYLCEKQEAVLNLLEKSHGHLDRLSEIIGSYEVIPSDMVFPE 530
Query: 529 FRNIGLLQKRALTELRKLMAQSRVAEELLALSTKP 633 R IG + E R L A+ + A LL ++ P Sbjct: 531 LRAIGAIHIAIAQEFRHLQARIKAATPLLKMAQNP 565
Score = 44.7 bits (104), Expect = 0.005 Identities = 18/40 (45%), Positives = 28/40 (70%) Frame = +1
Query: 28 EINSSLDSFFPSAGFLYWINQSDVEKASQLQELSNIILGI 147 E+ ++L+S FP GFLYW++ EK QLQEL+ ++ G+ Sbjct: 256 ELEAALESVFPRKGFLYWMDLPKEEKMLQLQELAEVVTGV 295
>tr|Q5A310|Q5A310_CANAL Putative uncharacterized protein ISW2 OS=Candida albicans GN=ISW2 PE=4 SV=1 Length = 1056
Score = 42.0 bits (97), Expect = 0.031 Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 5/89 (5%) Frame = +1
Query: 82 INQSDVEKASQLQELSNIILGIGVYNRARDNIGNANDPIYSSFENGAKAMEKNVK----- 246 I + +E+A+Q L +++ G + +N+GN+ D + ++GAK + +N K Sbjct: 583 IEEKVLERAAQKLRLDQLVIQQGRQMNSNNNVGNSKDDLIGMIQHGAKEVFENSKGTMLD 642
Query: 247 NEVNTVLERGAAYRKVIDMHIHSLGIHHV 333 ++V +L+RGA ++ + LG+ + Sbjct: 643 DDVEEILKRGAEKTAELNNKFNKLGLDDI 671
>tr|A5DZB7|A5DZB7_LODEL Chromatin remodelling complex ATPase chain ISW1 OS=Lodderomyces elongisporus GN=LELG_02704 PE=4 SV=1 Length = 1088
Score = 41.6 bits (96), Expect = 0.041 Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 9/90 (10%) Frame = +1
Query: 82 INQSDVEKASQLQELSNIILGIGVYNRARDNIGNANDPIYSSFENGA---------KAME 234 I + +E+A+Q L +++ G A +N+GN+ D + ++GA K E Sbjct: 603 IEEKVLERAAQKLRLDQLVIQQGRLANANNNVGNSKDDLIEMIQHGAQKVFEGGKNKGEE 662
Query: 235 KNVKNEVNTVLERGAAYRKVIDMHIHSLGI 324 ++++++ +LERG K ++ + LG+ Sbjct: 663 DAIEDDIDKILERGMEKTKKMNEKFNKLGL 692
>tr|Q23H79|Q23H79_TETTH Putative uncharacterized protein OS=Tetrahymena thermophila SB210 GN=TTHERM_00820660 PE=4 SV=1 Length = 635
Score = 40.4 bits (93), Expect = 0.091 Identities = 22/81 (27%), Positives = 42/81 (51%) Frame = +1
Query: 28 EINSSLDSFFPSAGFLYWINQSDVEKASQLQELSNIILGIGVYNRARDNIGNANDPIYSS 207 E+ + L+S P A +++ + EK +QL ELSN+++GI ++N+ G P Sbjct: 167 EVAAGLESVIPRAALGPFVSLNPSEKVTQLVELSNLVIGIRLFNKWIQKGGIGLVPFQDL 226
Query: 208 FENGAKAMEKNVKNEVNTVLE 270 E + + + ++ E V+E Sbjct: 227 LEYEGRDLIERIRQEAFEVIE 247
>tr|Q95K32|Q95K32_MACFA Putative uncharacterized protein OS=Macaca fascicularis PE=2 SV=1 Length = 452
Score = 38.9 bits (89), Expect = 0.27 Identities = 23/97 (23%), Positives = 46/97 (47%) Frame = +1
Query: 10 DVLHKDEINSSLDSFFPSAGFLYWINQSDVEKASQLQELSNIILGIGVYNRARDNIGNAN 189 D+ E+ ++L S FP A ++ S +K QL+EL+ I+ GI ++NR G Sbjct: 149 DIKTVREVTAALQSIFPQAELGTFLTLSKKDKERQLKELTMIVTGIRLFNRDCGKGGEGI 208
Query: 190 DPIYSSFENGAKAMEKNVKNEVNTVLERGAAYRKVID 300 D + + A +++ ++ T + Y +++ Sbjct: 209 DDLPAVLHVAIPATMQHIDYQLETARSQVYRYTAILE 245
>tr|Q95JX1|Q95JX1_MACFA Putative uncharacterized protein OS=Macaca fascicularis PE=2 SV=1 Length = 397
Score = 38.9 bits (89), Expect = 0.27 Identities = 23/97 (23%), Positives = 46/97 (47%) Frame = +1
Query: 10 DVLHKDEINSSLDSFFPSAGFLYWINQSDVEKASQLQELSNIILGIGVYNRARDNIGNAN 189 D+ E+ ++L S FP A ++ S +K QL+EL+ I+ GI ++NR G Sbjct: 67 DIKTVREVTAALQSIFPQAELGTFLTLSKKDKERQLKELTMIVTGIRLFNRDCGKGGGGI 126
Query: 190 DPIYSSFENGAKAMEKNVKNEVNTVLERGAAYRKVID 300 D + + A +++ ++ T + Y +++ Sbjct: 127 DDLPAVLHVAIPATMQHIDYQLETARSQVYRYTAILE 163
>tr|A8K969|A8K969_HUMAN cDNA FLJ76955 OS=Homo sapiens PE=2 SV=1 Length = 622
Score = 38.5 bits (88), Expect = 0.35 Identities = 23/97 (23%), Positives = 46/97 (47%) Frame = +1
Query: 10 DVLHKDEINSSLDSFFPSAGFLYWINQSDVEKASQLQELSNIILGIGVYNRARDNIGNAN 189 D+ E+ ++L S FP A ++ S +K QL+EL+ I+ GI ++NR G Sbjct: 149 DIKTVREVTAALQSVFPQAELGTFLTLSKKDKERQLKELTMIVTGIRLFNRDCGKGGEGI 208
Query: 190 DPIYSSFENGAKAMEKNVKNEVNTVLERGAAYRKVID 300 D + + A +++ ++ T + Y +++ Sbjct: 209 DDLPAVLHVAIPATMQHIDYQLETARSQVYRYTAILE 245
>tr|A8ITF8|A8ITF8_CHLRE Flagellar associated protein (Fragment) OS=Chlamydomonas reinhardtii GN=FAP206 PE=4 SV=1 Length = 309
Score = 37.0 bits (84), Expect = 1.0 Identities = 20/72 (27%), Positives = 42/72 (58%) Frame = +1
Query: 28 EINSSLDSFFPSAGFLYWINQSDVEKASQLQELSNIILGIGVYNRARDNIGNANDPIYSS 207 E+ ++L+S FP + ++ ++ E+ +QL EL+ I GI +YNR+ G+A +S Sbjct: 105 ELRAALESVFPVSAVSRFVTLAEGERLTQLAELARICTGICLYNRSCGAGGSALPAAAAS 164
Query: 208 FENGAKAMEKNV 243 + A+ + +++ Sbjct: 165 YLPQAQRLLRDI 176
>tr|A2EYH1|A2EYH1_TRIVA Putative uncharacterized protein OS=Trichomonas vaginalis G3 GN=TVAG_275980 PE=4 SV=1 Length = 602
Score = 35.4 bits (80), Expect = 2.9 Identities = 16/40 (40%), Positives = 27/40 (67%) Frame = +1
Query: 37 SSLDSFFPSAGFLYWINQSDVEKASQLQELSNIILGIGVY 156 S+L+ FP + ++ SD EK ++LQ+LSN +LG+ V+ Sbjct: 155 SALEQIFPKSDVPKYLALSDEEKRAKLQDLSNNVLGVRVF 194
>tr|B3S356|B3S356_TRIAD Putative uncharacterized protein OS=Trichoplax adhaerens GN=TRIADDRAFT_50604 PE=4 SV=1 Length = 568
Score = 35.0 bits (79), Expect = 3.8 Identities = 44/195 (22%), Positives = 71/195 (36%) Frame = +1
Query: 28 EINSSLDSFFPSAGFLYWINQSDVEKASQLQELSNIILGIGVYNRARDNIGNANDPIYSS 207 E ++L S FP ++ +K QLQEL I+ GI ++N+ G D + S Sbjct: 155 EATAALQSIFPQTELGPFLAMVKKDKERQLQELILIVTGIRLFNKDCGKGGEGIDDLPSL 214
Query: 208 FENGAKAMEKNVKNEVNTVLERGAAYRKVIDMHIHSLGIHHVLVQRLRDELHYXXXXXXX 387 N+ + + R AY K D ++S H +Q L D+ H Sbjct: 215 LSEAIPETLNNIDQNLGAI--RQMAY-KYTDSLVNSRQ-HEGFLQILLDDAH------KC 264
Query: 388 XXXXXCVLTEMHSTMSXXXXXXXXXXXXXFATIGSETCVPNELVFPDFRNIGLLQKRALT 567 V E+ ++ + S+T VP V+P F + L + Sbjct: 265 NDHSKSVEIELKDRLNGLR-----------TIVQSKTAVPTAQVYPQFIRVAQLWRGLQD 313
Query: 568 ELRKLMAQSRVAEEL 612 EL L + + L Sbjct: 314 ELVLLSVLNNILYSL 328
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