DK950790 |
Clone id |
TST38A01NGRL0009_K05 |
Library |
TST38 |
Length |
624 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_K05. 5' end sequence. |
Accession |
DK950790 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL4120Contig1 |
Sequence |
ATCCACATTGGCCTTGCACACGACTGCACTGAGGCATAATGGCTGCAGCTATGGCGATGG CTGCGTCTGCAATGGCGTGTGCATCTTCGGCCCCACCTCCATCTTCTTCTTCGTCCTCCT CCCCTTCGTTTTCGTCTTCATCAACACCAGCGCCCATCCCAAGGCAGGTCCACTTTCCGA GCTCCATCCCTAACACGTCTCTTTCGACGACGCCCTCGACCTCCCCTCACGACCCATCTC TTCAATTCGCAAACATGATGTGGTTCAAAGGTCCCTACAATACGCAAATATTTGTGGGCG AGAATGAGCCTGCAGATTCTGTAGTGAGGCGCTTTCGACGTGCCGTCATGCAGGCAGGTA TAATCTTATAGTGCCCCCCCCGCCGTTTCTTTGAAACCCCACAGGATAAAAAAAAGCGGA AGCTCCAAGCAGCCCAGCGTAGACGATCCAAGTCGCGGTTCCTTCCAAGAGGAATGACTG ATCCGAGGAAAACCAGCCAGACTACGCCTGCTGCTGATGATGACGACNATGACAACTGGG AGTATGATGAAGTGGCTTAAGCAAGTGTTTTCTTACCTGACGTGTGACGAGCTTTGGAAA CTTTTAATCTTGTCCTTGGACCTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P48949 |
Definition |
sp|P48949|RS21_SYNY3 30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803) |
Align length |
42 |
Score (bit) |
48.9 |
E-value |
2.0e-05 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NVI2 |
Definition |
tr|A9NVI2|A9NVI2_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
56 |
Score (bit) |
85.1 |
E-value |
3.0e-15 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950790|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0009_K05, 5' (624 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NVI2|A9NVI2_PICSI Putative uncharacterized protein OS=Picea... 85 3e-15 tr|A9TZ20|A9TZ20_PHYPA Predicted protein OS=Physcomitrella paten... 84 5e-15 tr|A9TIY3|A9TIY3_PHYPA Predicted protein OS=Physcomitrella paten... 84 5e-15 tr|A9RWC0|A9RWC0_PHYPA Predicted protein OS=Physcomitrella paten... 84 9e-15 tr|A9RNE5|A9RNE5_PHYPA Predicted protein OS=Physcomitrella paten... 82 3e-14 tr|A5AI30|A5AI30_VITVI Putative uncharacterized protein OS=Vitis... 67 1e-09 tr|Q8VWX5|Q8VWX5_CUCSA Ribosome-like protein (Fragment) OS=Cucum... 66 1e-09 tr|A7P9T2|A7P9T2_VITVI Chromosome chr14 scaffold_9, whole genome... 64 6e-09 tr|A9P0L4|A9P0L4_PICSI Putative uncharacterized protein OS=Picea... 62 3e-08 tr|Q9LI88|Q9LI88_ARATH Arabidopsis thaliana genomic DNA, chromos... 59 2e-07 tr|Q94BT7|Q94BT7_ARATH AT3g27160/MYF5_3 OS=Arabidopsis thaliana ... 59 2e-07 tr|A9PGV4|A9PGV4_POPTR Putative uncharacterized protein OS=Popul... 59 2e-07 tr|A4S641|A4S641_OSTLU Plastid ribosomal protein S21 small ribos... 55 3e-06 tr|B7FMZ2|B7FMZ2_MEDTR Putative uncharacterized protein OS=Medic... 55 4e-06 tr|B6TT66|B6TT66_MAIZE Ribosome-like protein OS=Zea mays PE=2 SV=1 50 8e-05 tr|B6TRC5|B6TRC5_MAIZE Ribosome-like protein OS=Zea mays PE=2 SV=1 50 8e-05 tr|B1X100|B1X100_CYAA5 30S ribosomal protein S21 OS=Cyanothece (... 49 2e-04 tr|Q4BY05|Q4BY05_CROWT 30S ribosomal protein S21 OS=Crocosphaera... 49 2e-04 tr|B7JYC0|B7JYC0_SYNP8 Ribosomal protein S21 OS=Synechococcus sp... 49 2e-04 tr|B4BWF2|B4BWF2_9CHRO Ribosomal protein S21 OS=Cyanothece sp. P... 49 2e-04 tr|A3IGQ3|A3IGQ3_9CHRO 30S ribosomal protein S21 OS=Cyanothece s... 49 2e-04 tr|B6U581|B6U581_MAIZE Ribosome-like protein OS=Zea mays PE=2 SV=1 49 2e-04 tr|Q6YUV4|Q6YUV4_ORYSJ Os02g0189000 protein OS=Oryza sativa subs... 49 3e-04 tr|A2X1T8|A2X1T8_ORYSI Putative uncharacterized protein OS=Oryza... 49 3e-04 tr|B4AUQ5|B4AUQ5_9CHRO Ribosomal protein S21 OS=Cyanothece sp. P... 46 0.002 tr|A8YDR2|A8YDR2_MICAE 30S ribosomal protein S21 OS=Microcystis ... 46 0.002 tr|B2JA16|B2JA16_NOSP7 Ribosomal protein S21 OS=Nostoc punctifor... 45 0.005 tr|B7KLD0|B7KLD0_9CHRO Ribosomal protein S21 OS=Cyanothece sp. P... 45 0.005 tr|B5W0V8|B5W0V8_SPIMA Ribosomal protein S21 OS=Arthrospira maxi... 45 0.005 tr|A0YNR8|A0YNR8_9CYAN 30S ribosomal protein S21 OS=Lyngbya sp. ... 45 0.005
>tr|A9NVI2|A9NVI2_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 161
Score = 85.1 bits (209), Expect = 3e-15 Identities = 39/56 (69%), Positives = 48/56 (85%), Gaps = 1/56 (1%) Frame = +3
Query: 243 QFANMMWFKGP-YNTQIFVGENEPADSVVRRFRRAVMQAGIIL*CPPRRFFETPQD 407 ++AN+MWFKG YN Q+FVGE+EPAD+VVRRFR+AVM AG+I C RRFFE+PQD Sbjct: 51 EYANVMWFKGKHYNAQVFVGEDEPADAVVRRFRKAVMDAGVISECKRRRFFESPQD 106
>tr|A9TZ20|A9TZ20_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_61453 PE=4 SV=1 Length = 182
Score = 84.3 bits (207), Expect = 5e-15 Identities = 40/56 (71%), Positives = 46/56 (82%) Frame = +3
Query: 240 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIL*CPPRRFFETPQD 407 L+F N+M+FKG YN Q+FVGE+EPADSVVRRFRRAVM AG+I C RRF ET QD Sbjct: 75 LEFVNVMYFKGSYNAQVFVGEDEPADSVVRRFRRAVMAAGVIPECRRRRFHETSQD 130
>tr|A9TIY3|A9TIY3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_108240 PE=4 SV=1 Length = 177
Score = 84.3 bits (207), Expect = 5e-15 Identities = 39/56 (69%), Positives = 47/56 (83%) Frame = +3
Query: 240 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIL*CPPRRFFETPQD 407 L+ N+M+FKG YNTQ+FVGE+EPADSVVRRFR+AVM AG+I C RR+ ETPQD Sbjct: 67 LEHVNVMYFKGTYNTQVFVGEDEPADSVVRRFRKAVMAAGVIPECRRRRYHETPQD 122
>tr|A9RWC0|A9RWC0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_161395 PE=4 SV=1 Length = 179
Score = 83.6 bits (205), Expect = 9e-15 Identities = 50/108 (46%), Positives = 59/108 (54%), Gaps = 4/108 (3%) Frame = +3
Query: 240 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIL*CPPRRFFETPQDXXXX 419 L+ N+M+FKG YNTQ+FVGE+EPADSVVRRFR+AVM G+I C RR+ ETPQD Sbjct: 68 LEHVNVMYFKGTYNTQVFVGEDEPADSVVRRFRKAVMATGVIPECRRRRYHETPQDIVKR 127
Query: 420 XXXXXXXXXSKSRFL----PRGMTDPRKTSQTTPAAXXXXXXNWEYDE 551 + SR P G RK T AA W Y E Sbjct: 128 KQKDSHRRKASSRRFNGPRPEGGFGDRK---ETSAASSDDDDFWGYAE 172
>tr|A9RNE5|A9RNE5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_160111 PE=4 SV=1 Length = 179
Score = 81.6 bits (200), Expect = 3e-14 Identities = 39/56 (69%), Positives = 45/56 (80%) Frame = +3
Query: 240 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIL*CPPRRFFETPQD 407 ++F N+M+FKG YN QIFVGE+E ADSVVRRFRRAV AG+I C RRF ETPQD Sbjct: 72 MEFVNVMYFKGSYNAQIFVGEDESADSVVRRFRRAVSAAGVIPECRRRRFHETPQD 127
>tr|A5AI30|A5AI30_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031115 PE=4 SV=1 Length = 188
Score = 66.6 bits (161), Expect = 1e-09 Identities = 36/104 (34%), Positives = 49/104 (47%) Frame = +3
Query: 240 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIL*CPPRRFFETPQDXXXX 419 L ++N ++FK YN Q+ V +NEP + ++ RFRR VM+AG+I C RRFFE QD Sbjct: 80 LAYSNTLFFKSAYNVQVIVEDNEPEEKLLNRFRREVMRAGVIQECKRRRFFENKQDEKKR 139
Query: 420 XXXXXXXXXSKSRFLPRGMTDPRKTSQTTPAAXXXXXXNWEYDE 551 + R R T K + NWE E Sbjct: 140 KTREAAKRNRRRRPQSRFSTQDSKQEGSKNKKDDDEEDNWEVPE 183
>tr|Q8VWX5|Q8VWX5_CUCSA Ribosome-like protein (Fragment) OS=Cucumis sativus GN=rpo1 PE=2 SV=1 Length = 190
Score = 66.2 bits (160), Expect = 1e-09 Identities = 35/104 (33%), Positives = 49/104 (47%) Frame = +3
Query: 240 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIL*CPPRRFFETPQDXXXX 419 L +AN M+F+ YN Q+ V +NEP + ++ RFRR VM+AG+I C RRFFE QD Sbjct: 83 LAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKR 142
Query: 420 XXXXXXXXXSKSRFLPRGMTDPRKTSQTTPAAXXXXXXNWEYDE 551 + R P+ P+ NW+ E Sbjct: 143 KTREAAKRNRRRR--PQARFTPQNKQDVPATKQEADDDNWDLPE 184
>tr|A7P9T2|A7P9T2_VITVI Chromosome chr14 scaffold_9, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037840001 PE=4 SV=1 Length = 173
Score = 64.3 bits (155), Expect = 6e-09 Identities = 28/56 (50%), Positives = 39/56 (69%) Frame = +3
Query: 240 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIL*CPPRRFFETPQD 407 L ++N ++FK YN Q+ V +NEP + ++ RFRR VM+AG+I C RRFFE QD Sbjct: 80 LAYSNTLFFKSAYNVQVIVEDNEPEEKLLNRFRREVMRAGVIQECKRRRFFENKQD 135
>tr|A9P0L4|A9P0L4_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 143
Score = 62.0 bits (149), Expect = 3e-08 Identities = 30/47 (63%), Positives = 34/47 (72%) Frame = +3
Query: 267 KGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIL*CPPRRFFETPQD 407 +G YN QIFVGENE DSVVRRFRR V +A + C RRFFE+ QD Sbjct: 50 RGGYNAQIFVGENESEDSVVRRFRREVFKANVFEECRRRRFFESKQD 96
>tr|Q9LI88|Q9LI88_ARATH Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MYF5 OS=Arabidopsis thaliana GN=At3g27160 PE=4 SV=1 Length = 183
Score = 59.3 bits (142), Expect = 2e-07 Identities = 26/56 (46%), Positives = 37/56 (66%) Frame = +3
Query: 240 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIL*CPPRRFFETPQD 407 L ++N ++F YN Q+FV +NE + +V RFRR VM+ G+I C RR+FE QD Sbjct: 73 LAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQECKRRRYFENKQD 128
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